BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004593
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containi...   204   8e-51
emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]   201   4e-50
ref|XP_002531431.1| pentatricopeptide repeat-containing protein,...   194   5e-48
ref|XP_003593855.1| Pentatricopeptide repeat-containing protein ...   187   8e-46
ref|XP_002316718.1| predicted protein [Populus trichocarpa] gi|2...   182   2e-44

>ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  204 bits (518), Expect = 8e-51
 Identities = 99/128 (77%), Positives = 115/128 (89%)
 Frame = -2

Query: 384 RHAPEVLYAMLELLSRTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMR 205
           RH P V YAMLE+LS+TKL + AKR+LRLM +R IERRPEAFGYVMVSYSRAGKLRNAMR
Sbjct: 131 RHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMR 190

Query: 204 VLNLMQKAGVEADLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCMIKGYC 25
           VL +MQKAG+E DLSICNTA+HVLVM NRL+KAVRFL+RMQ V I PNV++YNC+IKGYC
Sbjct: 191 VLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYC 250

Query: 24  DVYRVEDA 1
           D++R+EDA
Sbjct: 251 DLHRLEDA 258


>emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  201 bits (512), Expect = 4e-50
 Identities = 98/128 (76%), Positives = 114/128 (89%)
 Frame = -2

Query: 384 RHAPEVLYAMLELLSRTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMR 205
           RH P V YAMLE+LS+TKL + AKR+LRLM +R IERRPEAFGYVMVSYSRAGKLRNAMR
Sbjct: 131 RHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMR 190

Query: 204 VLNLMQKAGVEADLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCMIKGYC 25
            L +MQKAG+E DLSICNTA+HVLVM NRL+KAVRFL+RMQ V I PNV++YNC+IKGYC
Sbjct: 191 XLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIXPNVITYNCLIKGYC 250

Query: 24  DVYRVEDA 1
           D++R+EDA
Sbjct: 251 DLHRLEDA 258


>ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528950|gb|EEF30943.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 737

 Score =  194 bits (494), Expect = 5e-48
 Identities = 95/128 (74%), Positives = 114/128 (89%)
 Frame = -2

Query: 384 RHAPEVLYAMLELLSRTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMR 205
           RH P V Y ML++LS+TKL + A+R+LRLM RRGI RRPEAF +VMVSYSRAGKLRNAM+
Sbjct: 133 RHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHVMVSYSRAGKLRNAMQ 192

Query: 204 VLNLMQKAGVEADLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCMIKGYC 25
           VL +MQKAGVE +L ICNTA+HVLVMAN+LEKA+RFL+RMQ VGI+PNVV+YNC+IKGYC
Sbjct: 193 VLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKGYC 252

Query: 24  DVYRVEDA 1
           D+Y+VE A
Sbjct: 253 DLYQVEHA 260



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 29/111 (26%), Positives = 53/111 (47%)
 Frame = -2

Query: 357 MLELLSRTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLMQKAG 178
           ++ +LS+     EA   LR  + RG +     +  ++ S+   G++  A  ++N M   G
Sbjct: 318 LVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKG 377

Query: 177 VEADLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCMIKGYC 25
              D+      V+ L    ++E+A + L +M + G  PN VSY  ++ G C
Sbjct: 378 CSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLC 428


>ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355482903|gb|AES64106.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  187 bits (475), Expect = 8e-46
 Identities = 90/128 (70%), Positives = 110/128 (85%)
 Frame = -2

Query: 384 RHAPEVLYAMLELLSRTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMR 205
           RH   V Y ML++LS+T+L + A+RILRLM RRGIER PEAF YVMVSYSRAG LRNA+R
Sbjct: 194 RHDAIVYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYVMVSYSRAGMLRNALR 253

Query: 204 VLNLMQKAGVEADLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCMIKGYC 25
           +L LMQKAGVE DLSICNTA++VLV  N+LEKA+RFL+RM+  GI P++VSYNC+IKGYC
Sbjct: 254 ILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYC 313

Query: 24  DVYRVEDA 1
           DV+R++DA
Sbjct: 314 DVHRIDDA 321


>ref|XP_002316718.1| predicted protein [Populus trichocarpa] gi|222859783|gb|EEE97330.1|
           predicted protein [Populus trichocarpa]
          Length = 684

 Score =  182 bits (463), Expect = 2e-44
 Identities = 89/128 (69%), Positives = 110/128 (85%)
 Frame = -2

Query: 384 RHAPEVLYAMLELLSRTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMR 205
           RH P V   ML++LS+TKL + A+R+LRLM RRGI+R P+ F  VMVSYSRAGKLRNAM+
Sbjct: 80  RHDPIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQ 139

Query: 204 VLNLMQKAGVEADLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCMIKGYC 25
           VL +MQKAG+E +L +CNTA+HVLVMAN LEKA+RFL+RMQ +GI PNVV+YNC+IKGYC
Sbjct: 140 VLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLIKGYC 199

Query: 24  DVYRVEDA 1
           D++RVEDA
Sbjct: 200 DLHRVEDA 207



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
 Frame = -2

Query: 378 APEVLY-AMLELLSRTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRV 202
           A +V Y  ++ +L + +   EA + LR  ++RG +     +  ++ SY + G++  A  +
Sbjct: 256 ADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEI 315

Query: 201 LNLMQKAGVEADLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCMIKGYC 25
           +N M   G   D+      ++    A  + +A + L +M + G  PN VSY   +KG C
Sbjct: 316 VNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLC 374