BLASTX nr result
ID: Coptis21_contig00004583
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00004583 (696 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D sub... 91 2e-16 gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode... 90 4e-16 ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D sub... 90 5e-16 ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub... 89 6e-16 ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub... 89 6e-16 >ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine max] Length = 1205 Score = 90.9 bits (224), Expect = 2e-16 Identities = 40/49 (81%), Positives = 46/49 (93%) Frame = +1 Query: 1 NPHAFPTRQTPGQLLEAALGKGIACGGLMRYATPFTTPLIDHITDQLHR 147 NPHAFP+RQTPGQLLEAALGKGIACGG++R ATPF+TP +D IT+QLHR Sbjct: 991 NPHAFPSRQTPGQLLEAALGKGIACGGILRQATPFSTPSVDAITEQLHR 1039 >gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum] Length = 1019 Score = 90.1 bits (222), Expect = 4e-16 Identities = 40/49 (81%), Positives = 45/49 (91%) Frame = +1 Query: 1 NPHAFPTRQTPGQLLEAALGKGIACGGLMRYATPFTTPLIDHITDQLHR 147 NPHAFP+RQTPGQLLEAALGKGIACGGL +YATPF+T +D +TDQLHR Sbjct: 805 NPHAFPSRQTPGQLLEAALGKGIACGGLQKYATPFSTLSVDAVTDQLHR 853 >ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine max] Length = 1205 Score = 89.7 bits (221), Expect = 5e-16 Identities = 39/49 (79%), Positives = 46/49 (93%) Frame = +1 Query: 1 NPHAFPTRQTPGQLLEAALGKGIACGGLMRYATPFTTPLIDHITDQLHR 147 NPHAFP+RQTPGQLLEAALGKGIACGG+++ ATPF+TP +D IT+QLHR Sbjct: 991 NPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLHR 1039 >ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis sativus] Length = 1031 Score = 89.4 bits (220), Expect = 6e-16 Identities = 40/49 (81%), Positives = 45/49 (91%) Frame = +1 Query: 1 NPHAFPTRQTPGQLLEAALGKGIACGGLMRYATPFTTPLIDHITDQLHR 147 NPHAFP+RQTPGQLLEAALGKGIA GG ++YATPF+TP +D ITDQLHR Sbjct: 983 NPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHR 1031 >ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis sativus] Length = 1197 Score = 89.4 bits (220), Expect = 6e-16 Identities = 40/49 (81%), Positives = 45/49 (91%) Frame = +1 Query: 1 NPHAFPTRQTPGQLLEAALGKGIACGGLMRYATPFTTPLIDHITDQLHR 147 NPHAFP+RQTPGQLLEAALGKGIA GG ++YATPF+TP +D ITDQLHR Sbjct: 983 NPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHR 1031