BLASTX nr result

ID: Coptis21_contig00004580 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004580
         (929 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269873.2| PREDICTED: DEAD-box ATP-dependent RNA helica...   417   e-114
ref|XP_002318863.1| predicted protein [Populus trichocarpa] gi|2...   416   e-114
ref|XP_003536498.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   414   e-113
ref|XP_002322430.1| predicted protein [Populus trichocarpa] gi|2...   412   e-113
ref|XP_003556075.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   411   e-112

>ref|XP_002269873.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Vitis
           vinifera]
          Length = 711

 Score =  417 bits (1071), Expect = e-114
 Identities = 215/303 (70%), Positives = 246/303 (81%), Gaps = 5/303 (1%)
 Frame = -1

Query: 896 EVEDENG-----TSTESEHPLVISNKKQKKEKIISDXXXXXXXXXXXXXXXXXXVDDPNA 732
           E++D+N      TS+E   P+  S K +KK+  + +                   ++PNA
Sbjct: 71  EIDDDNEDQMSETSSELGEPVNSSLKAKKKKLKVPEMEEEEGKAE----------ENPNA 120

Query: 731 VSKFRISVPLREMLKSKGIEALFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILES 552
           +S FRIS PLRE LKSKGIEALFPIQAMTFDT+LDGSDLVGRARTGQGKTLAFVLPILES
Sbjct: 121 LSNFRISEPLREKLKSKGIEALFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILES 180

Query: 551 LINGPTKASRKTGYGRAPTVLVLLPTRELANQVHDDFKVYGGAVGLNACCLYGGSPYNPQ 372
           LINGP + SRKTGYGR P VLVLLPTRELA QV+ DF VYGGA+GL +CCLYGG+PY  Q
Sbjct: 181 LINGPNRGSRKTGYGRPPCVLVLLPTRELATQVYADFDVYGGAIGLTSCCLYGGAPYQAQ 240

Query: 371 ESALKRGVDVVIGTPGRIKDHLERGNLDLSSLKFRVLDEADEMLKMGFVDDVELILGKVK 192
           E  LKRGVD+V+GTPGRIKDH+ERGN+D SSLKFRVLDEADEML+MGFV+DVELILGKV+
Sbjct: 241 EIKLKRGVDIVVGTPGRIKDHIERGNIDFSSLKFRVLDEADEMLRMGFVEDVELILGKVE 300

Query: 191 DLTKVQTLLFSATLPSWVQNISKRFLKPNKKTADLVGNEKMKASTNVRHIILPCSSNAIS 12
           D++KVQTLLFSATLP WV+ IS RFLKP  KTADLVGNEKMKASTNVRHI+LPCSS+A S
Sbjct: 301 DVSKVQTLLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMKASTNVRHIVLPCSSSARS 360

Query: 11  QLI 3
           Q+I
Sbjct: 361 QVI 363


>ref|XP_002318863.1| predicted protein [Populus trichocarpa] gi|222859536|gb|EEE97083.1|
           predicted protein [Populus trichocarpa]
          Length = 652

 Score =  416 bits (1068), Expect = e-114
 Identities = 209/296 (70%), Positives = 245/296 (82%)
 Frame = -1

Query: 890 EDENGTSTESEHPLVISNKKQKKEKIISDXXXXXXXXXXXXXXXXXXVDDPNAVSKFRIS 711
           E+ + TS+E   P+ +  KK KK K++ +                   +DPNAV++FRIS
Sbjct: 23  EERSETSSELGEPVNLK-KKSKKAKVVEEEEDEEEVKA----------EDPNAVTRFRIS 71

Query: 710 VPLREMLKSKGIEALFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTK 531
            PLRE LK +GIEALFPIQA TF+ +L+G DLVGRARTGQGKTLAFVLPILESL+NGP K
Sbjct: 72  EPLREALKKRGIEALFPIQARTFEDILNGCDLVGRARTGQGKTLAFVLPILESLVNGPAK 131

Query: 530 ASRKTGYGRAPTVLVLLPTRELANQVHDDFKVYGGAVGLNACCLYGGSPYNPQESALKRG 351
           ASRKTGYGR P+VLVLLPTRELA QV +DFKVYGGAVGLN+CC+YGG+ Y PQE ALKRG
Sbjct: 132 ASRKTGYGRPPSVLVLLPTRELATQVFEDFKVYGGAVGLNSCCVYGGASYQPQEFALKRG 191

Query: 350 VDVVIGTPGRIKDHLERGNLDLSSLKFRVLDEADEMLKMGFVDDVELILGKVKDLTKVQT 171
           VD+V+GTPGRIKDH+E+GN+DLS LKFRVLDE+DEML+MGFV+DVELILGKV+D+ KVQT
Sbjct: 192 VDIVVGTPGRIKDHIEKGNIDLSLLKFRVLDESDEMLRMGFVEDVELILGKVEDVRKVQT 251

Query: 170 LLFSATLPSWVQNISKRFLKPNKKTADLVGNEKMKASTNVRHIILPCSSNAISQLI 3
           LLFSATLP WV+NIS RFLKP KKT DLVGNEKMKASTNVRHI+LPCS+ A+ Q+I
Sbjct: 252 LLFSATLPDWVKNISSRFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTAAMPQVI 307


>ref|XP_003536498.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
          Length = 697

 Score =  414 bits (1063), Expect = e-113
 Identities = 205/279 (73%), Positives = 239/279 (85%)
 Frame = -1

Query: 839 NKKQKKEKIISDXXXXXXXXXXXXXXXXXXVDDPNAVSKFRISVPLREMLKSKGIEALFP 660
           NKK+KK+K++                     DDPNA+S FRIS PLRE LK KGIE+LFP
Sbjct: 86  NKKKKKKKVVKSEEKEQPLLVTEPKEEKK--DDPNAISNFRISEPLREKLKEKGIESLFP 143

Query: 659 IQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTKASRKTGYGRAPTVLVLL 480
           IQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLINGP K++RKTGYGR P+VLVLL
Sbjct: 144 IQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLINGPAKSARKTGYGRTPSVLVLL 203

Query: 479 PTRELANQVHDDFKVYGGAVGLNACCLYGGSPYNPQESALKRGVDVVIGTPGRIKDHLER 300
           PTRELA QVH DF+VYGGA+GL++CCLYGG+PY  QE  L+RGVD+VIGTPGR+KDH+E+
Sbjct: 204 PTRELACQVHADFEVYGGAMGLSSCCLYGGAPYQGQELKLRRGVDIVIGTPGRVKDHIEK 263

Query: 299 GNLDLSSLKFRVLDEADEMLKMGFVDDVELILGKVKDLTKVQTLLFSATLPSWVQNISKR 120
           GN+DLS LKFRVLDEADEML+MGFV+DVE+ILGKV+++ KVQTLLFSATLP WV+ I+ +
Sbjct: 264 GNIDLSQLKFRVLDEADEMLRMGFVEDVEMILGKVENVNKVQTLLFSATLPDWVKQIALK 323

Query: 119 FLKPNKKTADLVGNEKMKASTNVRHIILPCSSNAISQLI 3
           FLKP+KKTADLVGN KMKASTNVRHI+LPC+S+A +QLI
Sbjct: 324 FLKPDKKTADLVGNTKMKASTNVRHIVLPCTSSARAQLI 362


>ref|XP_002322430.1| predicted protein [Populus trichocarpa] gi|222869426|gb|EEF06557.1|
           predicted protein [Populus trichocarpa]
          Length = 657

 Score =  412 bits (1058), Expect = e-113
 Identities = 210/298 (70%), Positives = 245/298 (82%)
 Frame = -1

Query: 896 EVEDENGTSTESEHPLVISNKKQKKEKIISDXXXXXXXXXXXXXXXXXXVDDPNAVSKFR 717
           E E+ + TS+E   P+ +  KK KK K+  +                   +DPNAV++FR
Sbjct: 40  EEEERSETSSELCEPVNLK-KKSKKAKVEEEEEEVKA-------------EDPNAVTRFR 85

Query: 716 ISVPLREMLKSKGIEALFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLINGP 537
           IS PLRE+LK +GIEALFPIQA TF+ +L+G DLVGRARTGQGKTLAFVLPILESL+NG 
Sbjct: 86  ISEPLREVLKKRGIEALFPIQARTFEDILNGGDLVGRARTGQGKTLAFVLPILESLVNGL 145

Query: 536 TKASRKTGYGRAPTVLVLLPTRELANQVHDDFKVYGGAVGLNACCLYGGSPYNPQESALK 357
            KASRKTGYGR P+VLVLLPTRELA QV DDFKVYGGA+GL++CC+YGG+ Y PQE ALK
Sbjct: 146 AKASRKTGYGRPPSVLVLLPTRELATQVFDDFKVYGGAMGLDSCCVYGGASYQPQEFALK 205

Query: 356 RGVDVVIGTPGRIKDHLERGNLDLSSLKFRVLDEADEMLKMGFVDDVELILGKVKDLTKV 177
           RGVDVV+GTPGRIKDH+E+GN+DLS LKFRVLDEADEML+MGFV+DVELILGKVKD+ KV
Sbjct: 206 RGVDVVVGTPGRIKDHIEKGNIDLSLLKFRVLDEADEMLRMGFVEDVELILGKVKDVNKV 265

Query: 176 QTLLFSATLPSWVQNISKRFLKPNKKTADLVGNEKMKASTNVRHIILPCSSNAISQLI 3
           QTLLFSATLP WV+ IS +FLKP KKT DLVGNEKMKASTNVRHI+LPCS++AI Q+I
Sbjct: 266 QTLLFSATLPGWVKQISSKFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTSAIPQVI 323


>ref|XP_003556075.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
          Length = 693

 Score =  411 bits (1057), Expect = e-112
 Identities = 205/279 (73%), Positives = 238/279 (85%)
 Frame = -1

Query: 839 NKKQKKEKIISDXXXXXXXXXXXXXXXXXXVDDPNAVSKFRISVPLREMLKSKGIEALFP 660
           NKK+KK+K++                     +DPNA+S FRIS PLR+ LK KGIE+LFP
Sbjct: 82  NKKKKKKKVVKSEEKEQPLVTEANGEKK---EDPNALSNFRISEPLRQKLKEKGIESLFP 138

Query: 659 IQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTKASRKTGYGRAPTVLVLL 480
           IQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTKASRKTG+GR P+VLVLL
Sbjct: 139 IQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTKASRKTGFGRTPSVLVLL 198

Query: 479 PTRELANQVHDDFKVYGGAVGLNACCLYGGSPYNPQESALKRGVDVVIGTPGRIKDHLER 300
           PTRELA QVH DF VYGGA+GL++CCLYGG+PY  QE  L+RGVD+VIGTPGR+KDH+E+
Sbjct: 199 PTRELACQVHADFDVYGGAMGLSSCCLYGGAPYQGQEIKLRRGVDIVIGTPGRVKDHIEK 258

Query: 299 GNLDLSSLKFRVLDEADEMLKMGFVDDVELILGKVKDLTKVQTLLFSATLPSWVQNISKR 120
           GN+DLS LKFRVLDEADEML+MGFV+DVE+ILGKV+++ KVQTLLFSATLP WV+ I+ R
Sbjct: 259 GNIDLSQLKFRVLDEADEMLRMGFVEDVEMILGKVENVNKVQTLLFSATLPDWVKQIAAR 318

Query: 119 FLKPNKKTADLVGNEKMKASTNVRHIILPCSSNAISQLI 3
           FLKP+KKTADLVGN KMKAS NVRHI+LPC+S+A +QLI
Sbjct: 319 FLKPDKKTADLVGNTKMKASINVRHIVLPCTSSARAQLI 357


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