BLASTX nr result
ID: Coptis21_contig00004520
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00004520
(529 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN76773.1| hypothetical protein VITISV_017587 [Vitis vinifera] 195 3e-61
ref|XP_002285591.1| PREDICTED: eukaryotic translation initiation... 195 3e-61
ref|XP_003522102.1| PREDICTED: eukaryotic translation initiation... 196 3e-60
ref|XP_002515389.1| Eukaryotic translation initiation factor 3 s... 191 5e-59
ref|XP_004160247.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic t... 187 7e-58
>emb|CAN76773.1| hypothetical protein VITISV_017587 [Vitis vinifera]
Length = 719
Score = 195 bits (496), Expect(2) = 3e-61
Identities = 99/149 (66%), Positives = 115/149 (77%), Gaps = 6/149 (4%)
Frame = +2
Query: 5 GDIKEDRVLMPVDPYTEN----CFIEYNTPQEVELAKEKSHGYKLGREYI-AVNLSDDFD 169
G IKED + MPVD T+ CFIEYNTPQE ELA+EK++GYKL R +I AVN+ DDFD
Sbjct: 89 GVIKEDGLWMPVDSDTQKTLGYCFIEYNTPQEAELAREKTNGYKLDRAHIFAVNMFDDFD 148
Query: 170 RFMKVPDEWDPPETKTYTPGENLQQWLTDEE-HDHFVIRAVSDTEVLWNDHRQLKPELVS 346
RFMKVPDEW PPETK YTPGENLQ WLTDE+ D FVIRA SDTEVLWND R LKPE V
Sbjct: 149 RFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARHLKPEPVY 208
Query: 347 RLSFWTDNLVQWSRCGTYLASVLRLSSLI 433
+ ++WT++ VQWS GTYLA+V R + +
Sbjct: 209 KRAYWTESFVQWSPLGTYLATVHRQGAAV 237
Score = 65.1 bits (157), Expect(2) = 3e-61
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = +1
Query: 415 QVKLIDFPPREKFLVTYSSHEPSNSCDSHRFVLNIFDV 528
QVKLIDF P EK+LVTYSSHEPSN D+HR VLN+FDV
Sbjct: 254 QVKLIDFSPGEKYLVTYSSHEPSNPRDTHRVVLNVFDV 291
>ref|XP_002285591.1| PREDICTED: eukaryotic translation initiation factor 3 subunit B
[Vitis vinifera] gi|296082169|emb|CBI21174.3| unnamed
protein product [Vitis vinifera]
Length = 718
Score = 195 bits (496), Expect(2) = 3e-61
Identities = 99/149 (66%), Positives = 115/149 (77%), Gaps = 6/149 (4%)
Frame = +2
Query: 5 GDIKEDRVLMPVDPYTEN----CFIEYNTPQEVELAKEKSHGYKLGREYI-AVNLSDDFD 169
G IKED + MPVD T+ CFIEYNTPQE ELA+EK++GYKL R +I AVN+ DDFD
Sbjct: 89 GVIKEDGLWMPVDSDTQKTLGYCFIEYNTPQEAELAREKTNGYKLDRAHIFAVNMFDDFD 148
Query: 170 RFMKVPDEWDPPETKTYTPGENLQQWLTDEE-HDHFVIRAVSDTEVLWNDHRQLKPELVS 346
RFMKVPDEW PPETK YTPGENLQ WLTDE+ D FVIRA SDTEVLWND R LKPE V
Sbjct: 149 RFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARHLKPEPVY 208
Query: 347 RLSFWTDNLVQWSRCGTYLASVLRLSSLI 433
+ ++WT++ VQWS GTYLA+V R + +
Sbjct: 209 KRAYWTESFVQWSPLGTYLATVHRQGAAV 237
Score = 65.1 bits (157), Expect(2) = 3e-61
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = +1
Query: 415 QVKLIDFPPREKFLVTYSSHEPSNSCDSHRFVLNIFDV 528
QVKLIDF P EK+LVTYSSHEPSN D+HR VLN+FDV
Sbjct: 254 QVKLIDFSPGEKYLVTYSSHEPSNPRDTHRVVLNVFDV 291
>ref|XP_003522102.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
B-like [Glycine max]
Length = 718
Score = 196 bits (497), Expect(2) = 3e-60
Identities = 99/149 (66%), Positives = 114/149 (76%), Gaps = 6/149 (4%)
Frame = +2
Query: 5 GDIKEDRVLMPVDPYTEN----CFIEYNTPQEVELAKEKSHGYKLGREYI-AVNLSDDFD 169
G IKED + MPVDP TE CFIEYNTPQE ELAKEK+HGYKL R +I AV++ DDFD
Sbjct: 90 GVIKEDGLWMPVDPETEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFAVSMFDDFD 149
Query: 170 RFMKVPDEWDPPETKTYTPGENLQQWLTDEE-HDHFVIRAVSDTEVLWNDHRQLKPELVS 346
RFMKVP+EW PPETK Y PGENLQ WLTD + D FVIRA SDTEVLWND R LKP+ V
Sbjct: 150 RFMKVPNEWAPPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVY 209
Query: 347 RLSFWTDNLVQWSRCGTYLASVLRLSSLI 433
+ +FWT++ VQWS GTYLA+V R + +
Sbjct: 210 KRAFWTESFVQWSPLGTYLATVHRQGAAV 238
Score = 61.2 bits (147), Expect(2) = 3e-60
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = +1
Query: 415 QVKLIDFPPREKFLVTYSSHEPSNSCDSHRFVLNIFDV 528
QVKLIDF P EK+LVTYSSHEPSN D++R V+N+FDV
Sbjct: 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINLFDV 292
>ref|XP_002515389.1| Eukaryotic translation initiation factor 3 subunit, putative
[Ricinus communis] gi|223545333|gb|EEF46838.1|
Eukaryotic translation initiation factor 3 subunit,
putative [Ricinus communis]
Length = 720
Score = 191 bits (484), Expect(2) = 5e-59
Identities = 95/149 (63%), Positives = 114/149 (76%), Gaps = 6/149 (4%)
Frame = +2
Query: 5 GDIKEDRVLMPVDPYTEN----CFIEYNTPQEVELAKEKSHGYKLGREYI-AVNLSDDFD 169
G IKED + MPVDP T+ CFIEYNTPQE ELAKEK++GYKL R +I AVN+ +DFD
Sbjct: 90 GVIKEDGLWMPVDPETQKTLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFEDFD 149
Query: 170 RFMKVPDEWDPPETKTYTPGENLQQWLTDEE-HDHFVIRAVSDTEVLWNDHRQLKPELVS 346
RFM+VPDEW PPE + Y PGENLQ WLTDE+ D FVIRA SDTEV WND RQLKP+ V
Sbjct: 150 RFMRVPDEWAPPEFRPYVPGENLQHWLTDEKARDQFVIRAGSDTEVFWNDARQLKPDPVY 209
Query: 347 RLSFWTDNLVQWSRCGTYLASVLRLSSLI 433
+ ++WT++ VQWS GTYLA+V R + +
Sbjct: 210 KRAYWTESFVQWSPLGTYLATVHRQGAAV 238
Score = 62.4 bits (150), Expect(2) = 5e-59
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = +1
Query: 415 QVKLIDFPPREKFLVTYSSHEPSNSCDSHRFVLNIFDV 528
QVKLIDF P EK+LVTYSSHEPSN D++R V+NIFDV
Sbjct: 255 QVKLIDFSPGEKYLVTYSSHEPSNPHDANRIVINIFDV 292
>ref|XP_004160247.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation
factor 3 subunit B-like [Cucumis sativus]
Length = 718
Score = 187 bits (474), Expect(2) = 7e-58
Identities = 94/149 (63%), Positives = 110/149 (73%), Gaps = 6/149 (4%)
Frame = +2
Query: 5 GDIKEDRVLMPVDPYTEN----CFIEYNTPQEVELAKEKSHGYKLGREYI-AVNLSDDFD 169
G IK+D + MPVD T+ CFIEY TPQE ELAKEK+ GYKL R +I VN+ +DFD
Sbjct: 90 GVIKDDGLWMPVDRTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFD 149
Query: 170 RFMKVPDEWDPPETKTYTPGENLQQWLTDEE-HDHFVIRAVSDTEVLWNDHRQLKPELVS 346
RFMKVPDEW PPE YTPGENLQQWLTDE+ D FVIRA SDTEV WND R LKPE V
Sbjct: 150 RFMKVPDEWAPPEVNPYTPGENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVY 209
Query: 347 RLSFWTDNLVQWSRCGTYLASVLRLSSLI 433
+ +FWT++ VQWS GTYLA++ R + +
Sbjct: 210 KRTFWTESFVQWSSLGTYLATIHRQGAAV 238
Score = 62.4 bits (150), Expect(2) = 7e-58
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = +1
Query: 415 QVKLIDFPPREKFLVTYSSHEPSNSCDSHRFVLNIFDV 528
QVKLIDF P EK+LVTYSSHEPSN D++R V+NIFDV
Sbjct: 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDV 292