BLASTX nr result
ID: Coptis21_contig00004312
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00004312
(736 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002532598.1| pentatricopeptide repeat-containing protein,... 392 e-107
ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containi... 390 e-106
ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containi... 386 e-105
ref|XP_004173911.1| PREDICTED: pentatricopeptide repeat-containi... 385 e-105
ref|XP_002298285.1| predicted protein [Populus trichocarpa] gi|2... 375 e-102
>ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527686|gb|EEF29795.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 553
Score = 392 bits (1008), Expect = e-107
Identities = 193/239 (80%), Positives = 219/239 (91%)
Frame = +2
Query: 2 TITFNSLMSYETDYKEVSKIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEML 181
T+T+NSLMS+ET+YKEVSKIYDQMQR+GLQPDVISYALLI AYGKARREDEALAVFEEML
Sbjct: 283 TVTYNSLMSFETNYKEVSKIYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEML 342
Query: 182 DAGVRPTRKSYNILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMD 361
DAGVRPT K+YNILLDAFA+SGMV++ARTVFKSMRRD+ PD+ SYTTMLSAYVNASDM
Sbjct: 343 DAGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMA 402
Query: 362 GAEMFFRRLQQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIM 541
GAE FF RL+QDG EPNVVTYG LIKGYAK NNL+KMMEKYEEM+L+G+KANQTIFTTIM
Sbjct: 403 GAENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIM 462
Query: 542 DAHGKNTDFGNAVIWFREMGSCGFPPDQKAKNILLSLAKSAEEQKEANELAGLAGNTID 718
DA+GKN DFG+AVIW++EM G PPDQKAKNILLSLAK+A+EQKEAN++ G +G+ D
Sbjct: 463 DAYGKNKDFGSAVIWYKEMEQYGVPPDQKAKNILLSLAKTADEQKEANQMVGHSGDCGD 521
Score = 95.5 bits (236), Expect = 1e-17
Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 3/206 (1%)
Frame = +2
Query: 38 DYKEVSKIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 217
++ K+ M + G P+V+S+ L++AYG+ R + A A+F M +G +P+ +Y
Sbjct: 155 NFSAAEKVLSYMNKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQSSGPKPSAVTYQ 214
Query: 218 ILLDAFAVSGMVDEARTVFKSM---RRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRL 388
I+L F EA VF+++ + PD + M+ + A + + A F +
Sbjct: 215 IILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALM 274
Query: 389 QQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDF 568
Q G + VTY +L+ + N +++ + Y++M+ G++ + + +++A+GK
Sbjct: 275 TQRGVPKSTVTYNSLM---SFETNYKEVSKIYDQMQRSGLQPDVISYALLINAYGKARRE 331
Query: 569 GNAVIWFREMGSCGFPPDQKAKNILL 646
A+ F EM G P KA NILL
Sbjct: 332 DEALAVFEEMLDAGVRPTHKAYNILL 357
Score = 64.7 bits (156), Expect = 2e-08
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
Frame = +2
Query: 218 ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 397
+L+ A+ G A V M + P++ S+T ++ AY + + AE FRR+Q
Sbjct: 145 MLITAYGKQGNFSAAEKVLSYMNKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQSS 204
Query: 398 GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEM---RLKGIKANQTIFTTIMDAHGKNTDF 568
G +P+ VTY ++K + + N ++ E +E + +K +Q +F ++ H K ++
Sbjct: 205 GPKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNY 264
Query: 569 GNAVIWFREMGSCGFPPDQKAKNILLSLAKSAEE 670
A F M G P N L+S + +E
Sbjct: 265 EKARQIFALMTQRGVPKSTVTYNSLMSFETNYKE 298
>ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
[Vitis vinifera] gi|302143502|emb|CBI22063.3| unnamed
protein product [Vitis vinifera]
Length = 548
Score = 390 bits (1003), Expect = e-106
Identities = 191/245 (77%), Positives = 219/245 (89%)
Frame = +2
Query: 2 TITFNSLMSYETDYKEVSKIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEML 181
T+T+NSLMS+ET+YKEVSK YDQMQRAGL+PDV+SYALLI AYGKARRE+EALAVFEEML
Sbjct: 283 TVTYNSLMSFETNYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEML 342
Query: 182 DAGVRPTRKSYNILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMD 361
DAGVRPT K+YNILLDAFA+SGMVD+ARTVFKSMRRD+C PDI SYTTMLSAYVNASDM+
Sbjct: 343 DAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDME 402
Query: 362 GAEMFFRRLQQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIM 541
GAE FFRRL+QDGFEPNVVTYGTLIKGYAK++NLEKMMEKYEEM++ GIKANQ I+T +M
Sbjct: 403 GAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMM 462
Query: 542 DAHGKNTDFGNAVIWFREMGSCGFPPDQKAKNILLSLAKSAEEQKEANELAGLAGNTIDG 721
DA+GKN DFG+AV WF+EMG CG PPD+KA NILLSLAK+ E++EAN L G + +G
Sbjct: 463 DAYGKNKDFGSAVFWFKEMGFCGVPPDRKATNILLSLAKTEAEKEEANLLVGYSSKYSNG 522
Query: 722 GMGIG 736
M G
Sbjct: 523 QMDNG 527
Score = 101 bits (252), Expect = 1e-19
Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 3/206 (1%)
Frame = +2
Query: 38 DYKEVSKIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 217
D+ + +++ M + G P VIS+ L++AYGK ++ ++A +VF ML +G P+ +Y
Sbjct: 155 DFNKAERVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSALTYQ 214
Query: 218 ILLDAFAVSGMVDEARTVFKSMRRDK---CAPDIYSYTTMLSAYVNASDMDGAEMFFRRL 388
++L F EA F+++ D+ PD + M+ Y A + + A F +
Sbjct: 215 LILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLM 274
Query: 389 QQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDF 568
++ G + VTY +L+ + N +++ + Y++M+ G++ + + +++A+GK
Sbjct: 275 RERGVPQSTVTYNSLM---SFETNYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARRE 331
Query: 569 GNAVIWFREMGSCGFPPDQKAKNILL 646
A+ F EM G P KA NILL
Sbjct: 332 EEALAVFEEMLDAGVRPTHKAYNILL 357
Score = 62.0 bits (149), Expect = 1e-07
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
Frame = +2
Query: 218 ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 397
+L+ A+ G ++A VF M + +P + S+T ++ AY + AE FRR+
Sbjct: 145 MLVTAYGKQGDFNKAERVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSS 204
Query: 398 GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEM---RLKGIKANQTIFTTIMDAHGKNTDF 568
G EP+ +TY ++K + + N ++ E +E + +K +Q +F ++ + K ++
Sbjct: 205 GPEPSALTYQLILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNY 264
Query: 569 GNAVIWFREMGSCGFPPDQKAKNILLSLAKSAEEQKEANELAGLAG 706
A F M G P N L+S + +E + + AG
Sbjct: 265 EKARKIFGLMRERGVPQSTVTYNSLMSFETNYKEVSKTYDQMQRAG 310
>ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Cucumis sativus]
Length = 580
Score = 386 bits (991), Expect = e-105
Identities = 186/237 (78%), Positives = 217/237 (91%)
Frame = +2
Query: 2 TITFNSLMSYETDYKEVSKIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEML 181
T+T+NSLMS+ET+YKEVSKIYDQMQRAGLQPDV+SYALLI AYGKARRE+EALAVFEEML
Sbjct: 281 TVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEML 340
Query: 182 DAGVRPTRKSYNILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMD 361
DAG+RPT K+YNILLDAFA+SGMV++A+ VFKSM+RD+C+PDI SYTTMLSAYVNASDM+
Sbjct: 341 DAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDME 400
Query: 362 GAEMFFRRLQQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIM 541
GAE FFRRL+QDGF PNVVTYGTLIKGYAK+NNLEKM+++YEEM++ GI+ NQTI TTIM
Sbjct: 401 GAENFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTTIM 460
Query: 542 DAHGKNTDFGNAVIWFREMGSCGFPPDQKAKNILLSLAKSAEEQKEANELAGLAGNT 712
DA+GKN DFG+AVIWF E+ SCG PDQKAKNILLSLAK+AEE EAN+L G + +
Sbjct: 461 DAYGKNKDFGSAVIWFNEIESCGLRPDQKAKNILLSLAKTAEELDEANQLVGYSSQS 517
Score = 94.7 bits (234), Expect = 2e-17
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 3/206 (1%)
Frame = +2
Query: 38 DYKEVSKIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 217
D+ K+ + M + G P+V+S+ L++AYG+ RR + A A+F M G P+ +Y
Sbjct: 153 DFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEPSALTYQ 212
Query: 218 ILLDAFAVSGMVDEARTVFKSM---RRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRL 388
I+L F EA +F S+ + PD + ++ + A + + A F +
Sbjct: 213 IMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKVFAEM 272
Query: 389 QQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDF 568
G VTY +L+ + N +++ + Y++M+ G++ + + ++ A+GK
Sbjct: 273 AARGVPQTTVTYNSLM---SFETNYKEVSKIYDQMQRAGLQPDVVSYALLISAYGKARRE 329
Query: 569 GNAVIWFREMGSCGFPPDQKAKNILL 646
A+ F EM G P KA NILL
Sbjct: 330 EEALAVFEEMLDAGIRPTHKAYNILL 355
Score = 65.1 bits (157), Expect = 1e-08
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 3/166 (1%)
Frame = +2
Query: 218 ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 397
+L+ A+ G + A V M + AP++ S+T ++ AY + AE FRR+Q
Sbjct: 143 MLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSG 202
Query: 398 GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKG---IKANQTIFTTIMDAHGKNTDF 568
G EP+ +TY ++K + + + ++ E ++ + K +K +Q +F I+ K ++
Sbjct: 203 GPEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNY 262
Query: 569 GNAVIWFREMGSCGFPPDQKAKNILLSLAKSAEEQKEANELAGLAG 706
A F EM + G P N L+S + +E + + AG
Sbjct: 263 EKARKVFAEMAARGVPQTTVTYNSLMSFETNYKEVSKIYDQMQRAG 308
>ref|XP_004173911.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like, partial [Cucumis sativus]
Length = 299
Score = 385 bits (989), Expect = e-105
Identities = 185/236 (78%), Positives = 217/236 (91%)
Frame = +2
Query: 5 ITFNSLMSYETDYKEVSKIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLD 184
+T+NSLMS+ET+YKEVSKIYDQMQRAGLQPDV+SYALLI AYGKARRE+EALAVFEEMLD
Sbjct: 1 VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLD 60
Query: 185 AGVRPTRKSYNILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDG 364
AG+RPT K+YNILLDAFA+SGMV++A+ VFKSM+RD+C+PDI SYTTMLSAYVNASDM+G
Sbjct: 61 AGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEG 120
Query: 365 AEMFFRRLQQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMD 544
AE+FFRRL+QDGF PNVVTYGTLIKGYAK+NNLEKM+++YEEM++ GI+ NQTI TTIMD
Sbjct: 121 AEIFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTTIMD 180
Query: 545 AHGKNTDFGNAVIWFREMGSCGFPPDQKAKNILLSLAKSAEEQKEANELAGLAGNT 712
A+GKN DFG+AVIWF E+ SCG PDQKAKNILLSLAK+AEE EAN+L G + +
Sbjct: 181 AYGKNKDFGSAVIWFNEIESCGLRPDQKAKNILLSLAKTAEELDEANQLVGYSSQS 236
>ref|XP_002298285.1| predicted protein [Populus trichocarpa] gi|222845543|gb|EEE83090.1|
predicted protein [Populus trichocarpa]
Length = 575
Score = 375 bits (964), Expect = e-102
Identities = 182/232 (78%), Positives = 214/232 (92%)
Frame = +2
Query: 2 TITFNSLMSYETDYKEVSKIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEML 181
T+T+NSLMS+ET+YKEVSKIYDQMQR+GL+PDV+SYALLIKAYG+ARRE+EALAVFEEML
Sbjct: 259 TVTYNSLMSFETNYKEVSKIYDQMQRSGLRPDVVSYALLIKAYGRARREEEALAVFEEML 318
Query: 182 DAGVRPTRKSYNILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMD 361
DAGVRP+ K+YNILLDAFA+SGMV++AR VFKSMRRD+C PD+ SYTTMLSAYVNASDM+
Sbjct: 319 DAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDRCTPDLCSYTTMLSAYVNASDME 378
Query: 362 GAEMFFRRLQQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIM 541
GAE FF+RL+QDG +PNVVTYG LIKG+AK+NNLEKMME YEEM+L IKANQTI TTIM
Sbjct: 379 GAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTTIM 438
Query: 542 DAHGKNTDFGNAVIWFREMGSCGFPPDQKAKNILLSLAKSAEEQKEANELAG 697
DA+GKN DFG+AVIW++EM G PPDQKA+NILLSLAK+ +EQKEA++L G
Sbjct: 439 DAYGKNKDFGSAVIWYKEMEHHGVPPDQKAQNILLSLAKTQDEQKEASQLVG 490
Score = 87.0 bits (214), Expect = 4e-15
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 3/206 (1%)
Frame = +2
Query: 38 DYKEVSKIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 217
D+ + M G P+V+S+ L++AYG+ R + A A+F M +G P+ +Y
Sbjct: 131 DFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTSGPEPSALTYQ 190
Query: 218 ILLDAFAVSGMVDEARTVFKSM---RRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRL 388
I+L F EA VF+++ PD + M+ A + + A F +
Sbjct: 191 IILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYEKARKVFALM 250
Query: 389 QQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDF 568
+ G + VTY +L+ + N +++ + Y++M+ G++ + + ++ A+G+
Sbjct: 251 AERGVPQSTVTYNSLM---SFETNYKEVSKIYDQMQRSGLRPDVVSYALLIKAYGRARRE 307
Query: 569 GNAVIWFREMGSCGFPPDQKAKNILL 646
A+ F EM G P KA NILL
Sbjct: 308 EEALAVFEEMLDAGVRPSHKAYNILL 333
Score = 62.4 bits (150), Expect = 9e-08
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Frame = +2
Query: 218 ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 397
+L+ A+ G + A V +SM + P++ S+T ++ AY + AE FRR+Q
Sbjct: 121 MLITAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTS 180
Query: 398 GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLK---GIKANQTIFTTIMDAHGKNTDF 568
G EP+ +TY ++K + + N ++ E +E + K ++ +Q +F ++ K ++
Sbjct: 181 GPEPSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNY 240
Query: 569 GNAVIWFREMGSCGFPPDQKAKNILLSLAKSAEE 670
A F M G P N L+S + +E
Sbjct: 241 EKARKVFALMAERGVPQSTVTYNSLMSFETNYKE 274