BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004253
         (1360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicag...   127   7e-27
ref|XP_003612651.1| Replication factor A protein [Medicago trunc...   126   1e-26
ref|XP_002437006.1| hypothetical protein SORBIDRAFT_10g016776 [S...   101   4e-19
gb|EKG21239.1| Nucleic acid binding OB-fold tRNA/helicase-type [...   100   1e-18
ref|NP_595092.1| DNA replication factor A subunit Ssb1 [Schizosa...    98   6e-18

>ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicago truncatula]
            gi|357477581|ref|XP_003609076.1| Replication factor A 51
            kDa subunit [Medicago truncatula]
            gi|357477673|ref|XP_003609122.1| Replication factor A 51
            kDa subunit [Medicago truncatula]
            gi|355507966|gb|AES89108.1| Replication factor A 51 kDa
            subunit [Medicago truncatula] gi|355510131|gb|AES91273.1|
            Replication factor A 51 kDa subunit [Medicago truncatula]
            gi|355510177|gb|AES91319.1| Replication factor A 51 kDa
            subunit [Medicago truncatula]
          Length = 502

 Score =  127 bits (319), Expect = 7e-27
 Identities = 104/371 (28%), Positives = 179/371 (48%), Gaps = 11/371 (2%)
 Frame = +2

Query: 5    INASIPMEIYPQFKEKVQDGSVVHLEKFTV-KNVRSYCPV-NNKNKITFE-QYTTMRNIS 175
            I+A+IP    P  K+ +Q+G +  +  F V KN   Y  V NN + ++F          S
Sbjct: 75   IHATIPRRFSPSLKKVLQEGKIYVISHFEVSKNKEKYAVVENNPSMLSFYGDAIVTEEGS 134

Query: 176  DETSIPRQLFSFVDFKKLAPRDKQDEFLTDVIGFYNNIGELQKNVHTRMGQSDKKSIYID 355
            D+ +IPR +F FV+F  L  R  + E L DVIGF  ++  +++   T  G+ D  S+++ 
Sbjct: 135  DDNTIPRYIFEFVNFNDLIKRCGK-EVLADVIGFIIDVDPIEEKT-TVNGKVDMLSLHLG 192

Query: 356  NERMECLEITFWGDRIKQIPQVLTKN---GPRDIITV-TSTTVRLFSGKYVL--QATPAT 517
            +     L++T W D      Q L       P+  + + TST V+ + G   L   ++ +T
Sbjct: 193  DGSGNVLKVTLWDDYAPMFNQKLIDQMHATPKPNVAIFTSTLVKQYQGNCELYVSSSRST 252

Query: 518  KVYINLETDEAQTLKNSSNNPRAELPISRKRPSTYATEAIQVKNLEEIDTLLMSTSSVGK 697
             +YIN++T E   L  SS    + L    K   T +   + VK + E+ ++ +S    G 
Sbjct: 253  TIYINIDTPEVADLILSSKGKNSVL----KTTETLSLTNVDVKTISELLSMAVSGVYQGD 308

Query: 698  R-YKFKAKISNIDNKYNWHYNCCESDQCRRKVELKYPEWWCDYCSISMKEPTKRYKVQFE 874
              Y   A + +I  K   +Y  C    CR+ V     ++ C++C+  +  P  RY+++ +
Sbjct: 309  VVYNCVATVDDILLKNGLYYVSCP--HCRKTVSSTETDFNCEHCTKKVDYPKIRYRLELQ 366

Query: 875  IEDSTCKKLITAFDDEAEYLLQRPLDELLKIEKQENGFDL-VSEILEEPIGKEYEFEVRI 1051
            + DST   +   F + AE L Q  LD+L    + + G D  + + L+  IG ++ F+V++
Sbjct: 367  VNDSTESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKL 426

Query: 1052 TKYNCENGKDS 1084
            + Y    G  S
Sbjct: 427  SSYFERRGVQS 437


>ref|XP_003612651.1| Replication factor A protein [Medicago truncatula]
            gi|355513986|gb|AES95609.1| Replication factor A protein
            [Medicago truncatula]
          Length = 477

 Score =  126 bits (316), Expect = 1e-26
 Identities = 103/371 (27%), Positives = 179/371 (48%), Gaps = 11/371 (2%)
 Frame = +2

Query: 5    INASIPMEIYPQFKEKVQDGSVVHLEKFTV-KNVRSYCPV-NNKNKITFE-QYTTMRNIS 175
            I+A+IP    P  K+ +Q+G +  +  + V KN   Y  V NN + ++F          S
Sbjct: 43   IHATIPRRFSPSLKKVLQEGKIYVISHYEVSKNKEKYAVVENNPSMLSFYGDAIVTEEGS 102

Query: 176  DETSIPRQLFSFVDFKKLAPRDKQDEFLTDVIGFYNNIGELQKNVHTRMGQSDKKSIYID 355
            D+ +IPR +F FV+F  L  R  + E L DVIGF  ++  +++   T  G+ D  S+++ 
Sbjct: 103  DDNTIPRYIFEFVNFNDLIKRCGK-EVLADVIGFIIDVDPIEEKT-TVNGKVDMLSLHLG 160

Query: 356  NERMECLEITFWGDRIKQIPQVLTKN---GPRDIITV-TSTTVRLFSGKYVL--QATPAT 517
            +     L++T W D      Q L       P+  + + TST V+ + G   L   ++ +T
Sbjct: 161  DGSGNVLKVTLWDDYAPMFNQKLIDQMHATPKPNVAIFTSTLVKQYQGNCELYVSSSRST 220

Query: 518  KVYINLETDEAQTLKNSSNNPRAELPISRKRPSTYATEAIQVKNLEEIDTLLMSTSSVGK 697
             +YIN++T E   L  SS    + L    K   T +   + VK + E+ ++ +S    G 
Sbjct: 221  TIYINIDTPEVADLILSSKGENSVL----KTTETLSLTNVDVKTISELLSMAVSGVYQGD 276

Query: 698  R-YKFKAKISNIDNKYNWHYNCCESDQCRRKVELKYPEWWCDYCSISMKEPTKRYKVQFE 874
              Y   A + +I  K   +Y  C    CR+ V     ++ C++C+  +  P  RY+++ +
Sbjct: 277  VVYNCVATVDDILLKNGLYYVSCP--HCRKTVSSTETDFNCEHCTKKVDYPKIRYRLELQ 334

Query: 875  IEDSTCKKLITAFDDEAEYLLQRPLDELLKIEKQENGFDL-VSEILEEPIGKEYEFEVRI 1051
            + DST   +   F + AE L Q  LD+L    + + G D  + + L+  IG ++ F+V++
Sbjct: 335  VNDSTESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKL 394

Query: 1052 TKYNCENGKDS 1084
            + Y    G  S
Sbjct: 395  SSYFERRGVQS 405


>ref|XP_002437006.1| hypothetical protein SORBIDRAFT_10g016776 [Sorghum bicolor]
            gi|241915229|gb|EER88373.1| hypothetical protein
            SORBIDRAFT_10g016776 [Sorghum bicolor]
          Length = 958

 Score =  101 bits (252), Expect = 4e-19
 Identities = 91/349 (26%), Positives = 152/349 (43%), Gaps = 16/349 (4%)
 Frame = +2

Query: 17   IPMEIYP----QFKEKVQDGSVVHLEKFTVKNVRSYCPVNNKNKITFEQYTTMRNISD-E 181
            I  +IYP    QFK  +++GSV +L  F V+    Y PV+N + I F ++T+   + +  
Sbjct: 510  IHAQIYPPDHEQFKPLIKEGSVYNLSYFRVRKSGKYRPVDNDHMINFTRWTSAEEVVEIP 569

Query: 182  TSIPRQLFSFVDFKKLAPRDKQDEFLTDVIGFYNNIGELQK-NVHTRMGQSDKKSIYIDN 358
             + P   +S    ++L P  ++  F TDVIG    +  +    + TR  +S K+++ I N
Sbjct: 570  PAFPMYTYSLTPMEQLPPCAEETTFFTDVIGVVTMLSNVSSLRIRTRQSESLKRTVTICN 629

Query: 359  ERMECLEITFWGDRIKQIP--QVLTKNGPRDIITVTSTTVRLFSGKYVLQATPATKVYIN 532
                 L++  WG+R    P  QV         +      V+ ++    L   P+ K YIN
Sbjct: 630  ASGASLDVVLWGERATAFPAEQVHRDRTTPQTVIFVGALVKSYADNVSLSGGPSCKWYIN 689

Query: 533  LETDEAQTLKNSSNN----PRAELPISRKRPSTYATEAIQVKNLEEIDTLLMSTSSVGKR 700
             E  EA+ L  S +N     + E  ++   P  +A    + K + +I  LL         
Sbjct: 690  FEVPEAKALAASGSNIYQPVKWEQHMASSEPVAFAPP--EHKKVSDI-KLLHPFKYKKTE 746

Query: 701  YKFKAKISNIDNKYNWHYNCCESDQCRRKVELKYPEWWC--DYCSISMKEPTKRYKVQFE 874
            +     +  ID   +W YN C+  +C +     +  + C    C  ++  P  RYK+   
Sbjct: 747  WLVTVTVQKIDK--SWWYNACK--KCLKTARPFHDSFRCTEPKCG-TIGVPVPRYKLCIS 801

Query: 875  IEDSTCKKLITAFDDEAEYLLQRPLDELLKIEKQENGF--DLVSEILEE 1015
              D T       F   A+ L ++P+D L  I     GF  D V+ +LE+
Sbjct: 802  AGDETGDTEFVIFGRIAQRLTRKPVDTL--IADNPTGFIPDEVTRLLEK 848


>gb|EKG21239.1| Nucleic acid binding OB-fold tRNA/helicase-type [Macrophomina
            phaseolina MS6]
          Length = 616

 Score = 99.8 bits (247), Expect = 1e-18
 Identities = 79/345 (22%), Positives = 154/345 (44%), Gaps = 4/345 (1%)
 Frame = +2

Query: 26   EIYPQFKEKVQDGSVVHLEKFTVKNVRS-YCPVNNKNKITFEQYTTMRNISDETSIPRQL 202
            ++Y  F+E    G V ++   +VK  +  +  VNN  ++TF+  + +    D  S+P+  
Sbjct: 236  QLYDTFRE----GGVYYISNCSVKLAKKQFSNVNNDYELTFQNDSIVEPADDPDSVPQVR 291

Query: 203  FSFVDFKKLAPRDKQDEFLTDVIGFYNNIGELQKNVH-TRMGQSDKKSIYIDNERMECLE 379
            ++F     L  ++ +     D IG   ++GE+ + +  T      K+ + I ++ M  + 
Sbjct: 292  YNFTHIGDL--QNVEPNTTIDTIGVLKDVGEVSEIISKTTSKPYQKRELTIVDDSMTSVR 349

Query: 380  ITFWGDRIKQIPQVLTKNGPRDIITVTSTTVRLFSGKYVLQATPATKVYINLETDEAQTL 559
            +T WG   +          P  ++      V  F G+  L    +  + IN + DEA  L
Sbjct: 350  LTIWGPTAQGFDA-----SPESVVAFKGVKVSDFGGRS-LSLLSSGSMNINPDIDEAHKL 403

Query: 560  KNSSN-NPRAELPISRKRPSTYATEAIQVKNLEEIDTLLMSTSSVGKRYKFKAKISNIDN 736
            K   +   R +   S ++ ST  + + + K + +++   +  S   + +  KA I  + +
Sbjct: 404  KGWYDAQGRNDQFTSHQQSSTGTSRSRKYKTIAQVNDEQIGMSDQPEYFDLKATIVYVKH 463

Query: 737  KYNWHYNCCESDQCRRKV-ELKYPEWWCDYCSISMKEPTKRYKVQFEIEDSTCKKLITAF 913
              N+ Y  C S  C +KV E+   EW C+ C I+  +P  RY +   + D T +  ++ F
Sbjct: 464  D-NFAYPACASAGCNKKVVEINPGEWRCEKCDITHTKPEYRYIMSCNVSDHTGQLWLSCF 522

Query: 914  DDEAEYLLQRPLDELLKIEKQENGFDLVSEILEEPIGKEYEFEVR 1048
            DD  + ++ +  DEL++I   E       +   +   K + F V+
Sbjct: 523  DDSGKIIMGKSADELVEIRDNEENPSKFEQSFVDATCKTFIFNVK 567


>ref|NP_595092.1| DNA replication factor A subunit Ssb1 [Schizosaccharomyces pombe
            972h-] gi|2498845|sp|Q92372.1|RFA1_SCHPO RecName:
            Full=Replication factor A protein 1; AltName:
            Full=Single-stranded DNA-binding protein p68 subunit
            gi|1502413|gb|AAC49437.1| single-stranded DNA binding
            protein p68 subunit [Schizosaccharomyces pombe]
            gi|1814272|gb|AAC49694.1| Rpa1 [Schizosaccharomyces
            pombe] gi|4049512|emb|CAA22533.1| DNA replication factor
            A subunit Ssb1 [Schizosaccharomyces pombe]
          Length = 609

 Score = 97.8 bits (242), Expect = 6e-18
 Identities = 84/347 (24%), Positives = 148/347 (42%), Gaps = 6/347 (1%)
 Frame = +2

Query: 41   FKEKVQDGSVVHLEKFTVKNVRS-YCPVNNKNKITFEQYTTMRNISDETSIPRQLFSFVD 217
            F + +Q+GSV ++ +  V   +  Y  V N+ ++ FE+ T +R   D+T++P   FSFV 
Sbjct: 240  FYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKAEDQTAVPVAKFSFVS 299

Query: 218  FKKLAPRDKQDEFLTDVIGFYNNIGELQKNVHTRMGQS-DKKSIYIDNERMECLEITFWG 394
             +++   D   + + DVIG   N+G +Q+       +  DK+ I I ++    + +T WG
Sbjct: 300  LQEVG--DVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWG 357

Query: 395  DRIKQIPQVLTKNGPRDIITVTSTTVRLFSGKYVLQATPATKVYINLETDEAQTLKN--S 568
                +            I+      V  F G+ +   T +T + ++ +  E+  LK    
Sbjct: 358  KTAIEFSV-----SEESILAFKGVKVNDFQGRSLSMLTSST-MSVDPDIQESHLLKGWYD 411

Query: 569  SNNPRAELPISRKRPSTYAT--EAIQVKNLEEIDTLLMSTSSVGKRYKFKAKISNIDNKY 742
                  E        ST +T   + + KN+ E+    +  S     +  K  I  I  K 
Sbjct: 412  GQGRGQEFAKHSVISSTLSTTGRSAERKNIAEVQAEHLGMSETPDYFSLKGTIVYIRKK- 470

Query: 743  NWHYNCCESDQCRRKVELKYPEWWCDYCSISMKEPTKRYKVQFEIEDSTCKKLITAFDDE 922
            N  Y  C +  C +KV  +   W C+ C+     P  RY +   + D T +  +  FDD 
Sbjct: 471  NVSYPACPAADCNKKVFDQGGSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDV 530

Query: 923  AEYLLQRPLDELLKIEKQENGFDLVSEILEEPIGKEYEFEVRITKYN 1063
             + ++ +  DEL  +  QEN  +     + E     Y F+ R  + N
Sbjct: 531  GKLIMHKTADELNDL--QENDENAFMNCMAEACYMPYIFQCRAKQDN 575