BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004075
         (1043 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2...   339   8e-91
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   336   5e-90
ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, I...   327   2e-87
ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III ...   327   2e-87
gb|AFK41303.1| unknown [Medicago truncatula]                          325   9e-87

>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
            predicted protein [Populus trichocarpa]
          Length = 206

 Score =  339 bits (869), Expect = 8e-91
 Identities = 165/202 (81%), Positives = 185/202 (91%)
 Frame = -3

Query: 1002 KEEITRLFRIRKTVMQMLHDRGYLVADFELRATREDFVDKFGEHVKREDLAIHKSKNNDG 823
            +EEI RL RIRKTVMQML DRGY V DFE++ TRE F  K+G ++KREDL I+K+K ND 
Sbjct: 5    EEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTKRNDS 64

Query: 822  SDQIYVFFPEEAKVGVKTMKTYTNRMKTENVYRAILVVQQNLTPFARNCIAEITTKFHLE 643
            SDQIYVFFPEEAKVGVKTMKTYTNRMK+ENV+RAILVVQQNLTPFAR CI EI+TKFHLE
Sbjct: 65   SDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLE 124

Query: 642  VFQEAELLVNIKEHVLVPEHEVLGPDQKKSLLERYTLKETQLPRMQITDPVARYYGLKRG 463
            VFQEAELLVNIKEHVLVPEH+VL  ++KK+LLERYT+KETQLPR+QITDP+ARYYGLKRG
Sbjct: 125  VFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYGLKRG 184

Query: 462  QVVKIIRPSETAGRYITYRYVV 397
            QVVKIIRPSETAGRY+TYRYV+
Sbjct: 185  QVVKIIRPSETAGRYVTYRYVI 206


>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1
            isoform 1 [Vitis vinifera]
            gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
            RNA polymerases I, II, and III subunit RPABC1 isoform 2
            [Vitis vinifera]
          Length = 206

 Score =  336 bits (862), Expect = 5e-90
 Identities = 164/202 (81%), Positives = 185/202 (91%)
 Frame = -3

Query: 1002 KEEITRLFRIRKTVMQMLHDRGYLVADFELRATREDFVDKFGEHVKREDLAIHKSKNNDG 823
            +EEI+RLFRIRKTVMQML DRGY V DFE+  T+  FV KFGE++KREDL I+K+K  D 
Sbjct: 5    EEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKRTDS 64

Query: 822  SDQIYVFFPEEAKVGVKTMKTYTNRMKTENVYRAILVVQQNLTPFARNCIAEITTKFHLE 643
            SDQIYVFFPEE KVGVKTMKTYTNRMK+ENV+RAILVVQQNLTPFAR CI EI+TKFHLE
Sbjct: 65   SDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLE 124

Query: 642  VFQEAELLVNIKEHVLVPEHEVLGPDQKKSLLERYTLKETQLPRMQITDPVARYYGLKRG 463
            VFQEAELLVNIKEHVLVPEH+VL  ++KK+LLERYT+KETQLPR+Q++DP+ARY+GLKRG
Sbjct: 125  VFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFGLKRG 184

Query: 462  QVVKIIRPSETAGRYITYRYVV 397
            QVVKIIRPSETAGRYITYRYVV
Sbjct: 185  QVVKIIRPSETAGRYITYRYVV 206


>ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
            RPABC1-like [Cucumis sativus]
          Length = 207

 Score =  327 bits (839), Expect = 2e-87
 Identities = 160/203 (78%), Positives = 184/203 (90%), Gaps = 1/203 (0%)
 Frame = -3

Query: 1002 KEEITRLFRIRKTVMQMLHDRGYLVADFELRATREDFVDKFGEHVKREDLAIHKSKNNDG 823
            +EEITRLFRIRKTV QML DRGY V DFE+  TRE F  K+GE++KRED+ I+KSK ND 
Sbjct: 5    EEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDS 64

Query: 822  SDQIYVFFPEEAKVGVKTMKTYTNRMKTENVYRAILVVQQNLTPFARNCIAEITTK-FHL 646
            SDQIYVFFPEEAKVG+K +KTYT RMK+ENV+RAILVVQQNLTPFAR C++E T+K FHL
Sbjct: 65   SDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSFHL 124

Query: 645  EVFQEAELLVNIKEHVLVPEHEVLGPDQKKSLLERYTLKETQLPRMQITDPVARYYGLKR 466
            EVFQEAELLVNIK+HVLVPEH++L  ++KK+LLERYT+KETQLPR+Q+TDPVARYYGLKR
Sbjct: 125  EVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKR 184

Query: 465  GQVVKIIRPSETAGRYITYRYVV 397
            GQVVKIIRPSETAGRY+TYRYVV
Sbjct: 185  GQVVKIIRPSETAGRYVTYRYVV 207


>ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Medicago
            truncatula] gi|355511987|gb|AES93610.1| DNA-directed RNA
            polymerases I, II, and III subunit RPABC1 [Medicago
            truncatula]
          Length = 410

 Score =  327 bits (839), Expect = 2e-87
 Identities = 159/213 (74%), Positives = 187/213 (87%)
 Frame = -3

Query: 1035 DNKSERMADKEKEEITRLFRIRKTVMQMLHDRGYLVADFELRATREDFVDKFGEHVKRED 856
            D  +++     +EEITRL+RIRKTVMQML DR YLV DFEL  ++ DF DK+GE++KRED
Sbjct: 198  DTTTKKTMVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKRED 257

Query: 855  LAIHKSKNNDGSDQIYVFFPEEAKVGVKTMKTYTNRMKTENVYRAILVVQQNLTPFARNC 676
            L I+K+K +  SDQIYVFFPEEAKVGVKTMKTYTNRM +ENVYRAILV Q +LTPFA+ C
Sbjct: 258  LVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTC 317

Query: 675  IAEITTKFHLEVFQEAELLVNIKEHVLVPEHEVLGPDQKKSLLERYTLKETQLPRMQITD 496
            ++EI +KFHLEVFQEAELLVNIKEHVLVPEH++L   +KK+LLERYT+KETQLPR+Q+TD
Sbjct: 318  VSEIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTD 377

Query: 495  PVARYYGLKRGQVVKIIRPSETAGRYITYRYVV 397
            PVARYYGLKRGQVVKIIRPSETAGRY+TYR+VV
Sbjct: 378  PVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 410


>gb|AFK41303.1| unknown [Medicago truncatula]
          Length = 206

 Score =  325 bits (834), Expect = 9e-87
 Identities = 158/202 (78%), Positives = 182/202 (90%)
 Frame = -3

Query: 1002 KEEITRLFRIRKTVMQMLHDRGYLVADFELRATREDFVDKFGEHVKREDLAIHKSKNNDG 823
            +EEITRL+RIRKTVMQML DR YLV DFEL  ++ DF DK+GE++KREDL I+K+K +  
Sbjct: 5    EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDKP 64

Query: 822  SDQIYVFFPEEAKVGVKTMKTYTNRMKTENVYRAILVVQQNLTPFARNCIAEITTKFHLE 643
            SDQIYVFFPEEAKVGVKTMKTYTNRM +ENVYRAILV Q +LTPFA+ C++EI +KFHLE
Sbjct: 65   SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASKFHLE 124

Query: 642  VFQEAELLVNIKEHVLVPEHEVLGPDQKKSLLERYTLKETQLPRMQITDPVARYYGLKRG 463
            VFQEAELLVNIKEHVLVPEH++L   +KK+LLERYT+KETQLPR+Q+TDPVARYYGLKRG
Sbjct: 125  VFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRG 184

Query: 462  QVVKIIRPSETAGRYITYRYVV 397
            QVVKIIRPSETAGRY+TYR VV
Sbjct: 185  QVVKIIRPSETAGRYVTYRLVV 206