BLASTX nr result
ID: Coptis21_contig00003965
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00003965
(1646 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275596.1| PREDICTED: DNA repair and recombination prot... 384 e-104
ref|XP_002273814.1| PREDICTED: DNA repair and recombination prot... 383 e-104
ref|XP_004150074.1| PREDICTED: SWI/SNF-related matrix-associated... 372 e-100
ref|XP_004170971.1| PREDICTED: SWI/SNF-related matrix-associated... 370 e-100
ref|XP_003541607.1| PREDICTED: DNA repair and recombination prot... 361 3e-97
>ref|XP_002275596.1| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis
vinifera]
Length = 944
Score = 384 bits (986), Expect = e-104
Identities = 227/519 (43%), Positives = 309/519 (59%), Gaps = 8/519 (1%)
Frame = +2
Query: 107 DQMSPAERNTSQRKRIKYSDDHWINGLHAKSKYKRDKSLPDVIDYSDPFSVSNMIGELDC 286
D + E N+++ KRI+ D++ +H++ K KR K+ +V+DYSDPF++ N++ LD
Sbjct: 19 DLEAAGEYNSTKDKRIRTFDEN----MHSEPKQKRQKAGSNVVDYSDPFAIPNLLEGLDA 74
Query: 287 GLYGSVTKEIEQLCMLRLHMLQPAFSLYPDILNRRPDFTPQSPMSGS---GQTASNC--- 448
G +GS+TKEIE LC R+ ML P + +YP + D Q S + AS+
Sbjct: 75 GKFGSMTKEIEALCARRMQMLHPYYVMYPSLSYMSTDLGKQPSKKASKLVNRHASHLGHE 134
Query: 449 -IVELDDDCVVTCPPALDDSKLVCISSFEDVLPGHGGQNYNNNEVVILDSDDEEGSFGSI 625
+++L+DD +V P + + LP VVI+DSDDEE +
Sbjct: 135 DVIDLEDDHIVYDVP-------TATAVADAALP-----------VVIIDSDDEESGDQKV 176
Query: 626 KTRLAFASNVEPLRVEMPQDFQLHYRNDMRVVSETVRSTVLDANQKASWQYQEVVLMKPI 805
+ P V P Y+ V S L AN Y E + K
Sbjct: 177 --------SHPPQEVAWP---SFSYQE----VILRKPSVGLLANNPVVRDYVESIAPKKE 221
Query: 806 NENGTMDIEGKDLQEGNAVREEQKTLSNEAETKKDEGLYVGVQDNKLSHESSPQSDS-DD 982
+ T E + + G + +++L+ E K +G YVGV+D+ + E + Q+ + DD
Sbjct: 222 ERSLTASSEIRKDKGGLYIAVGERSLAANHEMKNVKGEYVGVEDDMEASEGNLQAKTKDD 281
Query: 983 GLGDIWREMTLALECSKDATGDTVEHNEDEGKDCDHSFILKDDLGYVCRVCGVIQKSIDT 1162
L D+W+E LAL+ SKD D E ++ ++C+HSF+LKDD+G VCR+CGV+ KSI+T
Sbjct: 282 DLADMWQEFDLALQSSKDVAVDPEEDGKEGEEECEHSFVLKDDIGSVCRICGVVNKSIET 341
Query: 1163 IFDYQWGKVSKTTRTYMSESRSTKEREDREASAFTGVNTSHDLAVCDISVHPRHMKQMKA 1342
I +YQ+ KV K +RTYM E R+TK+RE + + + H L V +I HPRH QMK
Sbjct: 342 IIEYQYSKV-KRSRTYMYEPRNTKDREPTDDPSDGLRFSEHSLIVTEIHAHPRHSMQMKP 400
Query: 1343 HQLEGFNFLVRNLVSGDPGGCILAHAPGSGKTFMIISFIQSFLAKYPHARPLVVLPKGIL 1522
HQ+EGFNFLV NLV+ +PGGCILAHAPGSGKTFMIISF+QSFLAKYP ARPLVVLPKGIL
Sbjct: 401 HQVEGFNFLVSNLVADNPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGIL 460
Query: 1523 ATWKKEFSIWQVEDFPLYDFYTSKAESREEQLIILKQWV 1639
ATWKKEF WQVED PLYDFY+ KA+SR +QL +LKQWV
Sbjct: 461 ATWKKEFLTWQVEDIPLYDFYSVKADSRPQQLEVLKQWV 499
>ref|XP_002273814.1| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis
vinifera]
Length = 903
Score = 383 bits (984), Expect = e-104
Identities = 229/514 (44%), Positives = 303/514 (58%), Gaps = 29/514 (5%)
Frame = +2
Query: 185 LHAKSKYKRDKSLPDVIDYSDPFSVSNMIGELDCGLYGSVTKEIEQLCMLRLHMLQPAFS 364
+H++ K KR K+ P+V+DYSDPF++ N++ LD G +GSVTKEIE LC R+ MLQP +
Sbjct: 1 MHSEPKQKRQKAGPNVVDYSDPFAIPNLLEGLDAGRFGSVTKEIEALCARRMQMLQPYYV 60
Query: 365 LYPDILNRRPDFTPQSPMSGS-------GQTASNCIVELDDDCVVTCPPALDDSKLVCIS 523
+YP + D + S A +++L+DD VV D L +
Sbjct: 61 MYPSLSYMCTDLGKKQGKKASKLVNREASHLAHEDVIDLEDDHVV-------DDALTATA 113
Query: 524 SFEDVLPGHGGQNYNNNEVVILDSDDEEGSFGSIKTRLAFASNVEPLRVEMPQDFQLHYR 703
+ LP VVI+DSDDE+ G K
Sbjct: 114 VEDATLP-----------VVIIDSDDED--CGDQK------------------------- 135
Query: 704 NDMRVVSETVRSTVLDANQKASWQYQEVVLMKP-----INENGTMDIEGK---DLQEGNA 859
VS + T S+ YQEVVL KP N D G ++EG+
Sbjct: 136 -----VSHPPQETAWP-----SFSYQEVVLRKPSVGLLANNPVVRDYVGSIAPKVEEGSL 185
Query: 860 -----VREE--------QKTLSNEAETKKDEGLYVGVQDNKLSHESSPQSDS-DDGLGDI 997
+R++ +K+L E KK +G YVGV+D+ ++E + ++ + DDGL D+
Sbjct: 186 MGATEIRKDKDVYIGVGEKSLVANLEMKKVQGEYVGVEDDMETNEGNLRAKTEDDGLADM 245
Query: 998 WREMTLALECSKDATGDTVEHNEDEGKDCDHSFILKDDLGYVCRVCGVIQKSIDTIFDYQ 1177
W+E LAL+ SKD D E ++ ++C+HSF+LKDD+G VCR+CGV+ KSI+TI +YQ
Sbjct: 246 WQEFDLALQSSKDVAVDPGEDEKESKEECEHSFVLKDDIGSVCRICGVVNKSIETIIEYQ 305
Query: 1178 WGKVSKTTRTYMSESRSTKEREDREASAFTGVNTSHDLAVCDISVHPRHMKQMKAHQLEG 1357
+ KV K +RTYM E R+TK+RE + + + H+L V +I HPRH QMK HQ+EG
Sbjct: 306 YTKV-KRSRTYMYEPRNTKDREPTDDPSDGLGFSEHNLTVTEIHAHPRHSMQMKPHQVEG 364
Query: 1358 FNFLVRNLVSGDPGGCILAHAPGSGKTFMIISFIQSFLAKYPHARPLVVLPKGILATWKK 1537
FNFLV NLV+ +PGGCILAHAPGSGKTFMIISF+QSFLAKYP ARPLVVLPKGILATWKK
Sbjct: 365 FNFLVSNLVAENPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGILATWKK 424
Query: 1538 EFSIWQVEDFPLYDFYTSKAESREEQLIILKQWV 1639
EF WQVED PLYDFY+ KA+SR +QL +LKQWV
Sbjct: 425 EFLTWQVEDIPLYDFYSVKADSRPQQLEVLKQWV 458
>ref|XP_004150074.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A containing DEAD/H box
1B-like [Cucumis sativus]
Length = 903
Score = 372 bits (954), Expect = e-100
Identities = 223/524 (42%), Positives = 299/524 (57%), Gaps = 22/524 (4%)
Frame = +2
Query: 140 QRKRIKYSDDHWINGLHAKSKYKRDKSLPD--------VIDYSDPFSVSNMIGELDCGLY 295
+ KR+K S D A K+ +L VIDYSDPF+ +N+I LDCG +
Sbjct: 22 KHKRLKLSSDGKDLSSTATFSAKKSNTLRQNKMNNSAKVIDYSDPFATNNLIDGLDCGHF 81
Query: 296 GSVTKEIEQLCMLRLHMLQPAFSLYPDILNRRPDFTP----QSPMSGSGQTASNCIVELD 463
GSVTKEI L ++ +L P + YP + + D + M+ + +++L+
Sbjct: 82 GSVTKEIGALVSRKMQVLSPYIAKYPALSSMLFDLGRSRECKEAMNNQASQLVHNLIDLE 141
Query: 464 DDCVVTCPPA-LDDSKLVCISSFEDVLPGHGGQNYNNNEVVILDSDDEEGSFGSIKTRLA 640
DD + ++ S+L ++I+DSD+E+
Sbjct: 142 DDSAIDVRSNNVEKSRL---------------------PILIIDSDEEDSK--------- 171
Query: 641 FASNVEPLRVEMPQDFQLHYRNDMRVVSETVRSTVLDANQKASWQYQEVVLMKPINENGT 820
Q+ +QEVVL +P ++
Sbjct: 172 --------------------------------------EQRVIHPFQEVVLPRPPGQSLF 193
Query: 821 MDI---EGKDLQEGNAVREEQKTLSNEAET-KKDEGLYVGVQDNKLSHESSPQSDS-DDG 985
DI + + Q+ A E+ T E+ T KD+G+Y+GV++++ E S Q++S DDG
Sbjct: 194 KDIAIVDHRTSQDRRASNGEEATPIGESGTINKDKGVYIGVEEDE--DEVSGQANSEDDG 251
Query: 986 LGDIWREMTLALECSKD---ATGDTVEHNEDEGKDCDHSFILKDDLGYVCRVCGVIQKSI 1156
LGDIW +M +ALECSKD A + E DC+HSF+LKDDLGYVCR+CGVI + I
Sbjct: 252 LGDIWNDMQMALECSKDLDAAVDSSSNQPTTEDVDCEHSFLLKDDLGYVCRICGVIDRGI 311
Query: 1157 DTIFDYQWGKVSKTTRTYMSESRSTKEREDREASAFTGVNTSHD-LAVCDISVHPRHMKQ 1333
+TIF++Q+ K K+TRTY+SESR+ +++ GV S D L V +IS HPRHMKQ
Sbjct: 312 ETIFEFQYNKGKKSTRTYISESRN------KDSGNIVGVKISEDDLTVTEISAHPRHMKQ 365
Query: 1334 MKAHQLEGFNFLVRNLVSGDPGGCILAHAPGSGKTFMIISFIQSFLAKYPHARPLVVLPK 1513
MK HQ+EGFNFL+ NLVS +PGGCILAHAPGSGKTFMIISF+QSFLAKYP ARPLVVLPK
Sbjct: 366 MKPHQIEGFNFLISNLVSDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPK 425
Query: 1514 GILATWKKEFSIWQVEDFPLYDFYTSKAESREEQLIILKQWVEH 1645
GILATWKKEF IWQVED PLYDFY+ KA++R +QL +L QWVEH
Sbjct: 426 GILATWKKEFQIWQVEDIPLYDFYSVKADNRAQQLTVLNQWVEH 469
>ref|XP_004170971.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A containing DEAD/H box
1B-like [Cucumis sativus]
Length = 903
Score = 370 bits (950), Expect = e-100
Identities = 222/524 (42%), Positives = 299/524 (57%), Gaps = 22/524 (4%)
Frame = +2
Query: 140 QRKRIKYSDDHWINGLHAKSKYKRDKSLPD--------VIDYSDPFSVSNMIGELDCGLY 295
+ KR+K S D A K+ +L VIDYSDPF+ +N+I LDCG +
Sbjct: 22 KHKRLKLSSDGKDLSSTATFSAKKSNTLRQNKMNNSAKVIDYSDPFATNNLIDGLDCGHF 81
Query: 296 GSVTKEIEQLCMLRLHMLQPAFSLYPDILNRRPDFTP----QSPMSGSGQTASNCIVELD 463
GSVTKEI L ++ +L P + YP + + D + M+ + +++L+
Sbjct: 82 GSVTKEIGALVSRKMQVLSPYIAKYPALSSMLFDLGRSRECKEAMNNQASQLVHNLIDLE 141
Query: 464 DDCVVTCPPA-LDDSKLVCISSFEDVLPGHGGQNYNNNEVVILDSDDEEGSFGSIKTRLA 640
DD + ++ S+L ++I+DSD+E+
Sbjct: 142 DDSAIDVRSNNVEKSRL---------------------PILIIDSDEEDSK--------- 171
Query: 641 FASNVEPLRVEMPQDFQLHYRNDMRVVSETVRSTVLDANQKASWQYQEVVLMKPINENGT 820
Q+ +QEVVL +P ++
Sbjct: 172 --------------------------------------EQRVIHPFQEVVLPRPPGQSLF 193
Query: 821 MDI---EGKDLQEGNAVREEQKTLSNEAET-KKDEGLYVGVQDNKLSHESSPQSDS-DDG 985
DI + + ++ A E+ T E+ T KD+G+Y+GV++++ E S Q++S DDG
Sbjct: 194 KDIAIVDHRTSRDRRASNGEEATPIGESGTINKDKGVYIGVEEDE--DEVSGQANSEDDG 251
Query: 986 LGDIWREMTLALECSKD---ATGDTVEHNEDEGKDCDHSFILKDDLGYVCRVCGVIQKSI 1156
LGDIW +M +ALECSKD A + E DC+HSF+LKDDLGYVCR+CGVI + I
Sbjct: 252 LGDIWNDMQMALECSKDLDAAVDSSSNQPTTEDVDCEHSFLLKDDLGYVCRICGVIDRGI 311
Query: 1157 DTIFDYQWGKVSKTTRTYMSESRSTKEREDREASAFTGVNTSHD-LAVCDISVHPRHMKQ 1333
+TIF++Q+ K K+TRTY+SESR+ +++ GV S D L V +IS HPRHMKQ
Sbjct: 312 ETIFEFQYNKGKKSTRTYISESRN------KDSGNIVGVKISEDDLTVTEISAHPRHMKQ 365
Query: 1334 MKAHQLEGFNFLVRNLVSGDPGGCILAHAPGSGKTFMIISFIQSFLAKYPHARPLVVLPK 1513
MK HQ+EGFNFL+ NLVS +PGGCILAHAPGSGKTFMIISF+QSFLAKYP ARPLVVLPK
Sbjct: 366 MKPHQIEGFNFLISNLVSDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPK 425
Query: 1514 GILATWKKEFSIWQVEDFPLYDFYTSKAESREEQLIILKQWVEH 1645
GILATWKKEF IWQVED PLYDFY+ KA++R +QL +L QWVEH
Sbjct: 426 GILATWKKEFQIWQVEDIPLYDFYSVKADNRAQQLTVLNQWVEH 469
>ref|XP_003541607.1| PREDICTED: DNA repair and recombination protein RDH54-like [Glycine
max]
Length = 1001
Score = 361 bits (927), Expect = 3e-97
Identities = 220/538 (40%), Positives = 315/538 (58%), Gaps = 37/538 (6%)
Frame = +2
Query: 143 RKRIKYSDDHWI-NGLHAKSKYKRDKSLPDVIDYSDPFSVSNMIGELDCGLYGSVTKEIE 319
R+++ +S W+ NG + + L +V+++ +PF+V++++ ++ G YGSVTK+IE
Sbjct: 34 RQKLFHSAVSWLENGFSPDPDRGKRQKLSNVVEHGNPFAVTDVLDRIEHGKYGSVTKDIE 93
Query: 320 QLCMLRLHMLQPAFSLYPD-------ILNRRPDFTPQSPMSGSGQTASNCIVELDDDCVV 478
L R+ +L P + YP +++R + +G T N I V
Sbjct: 94 ALFARRMKVLGPYLAKYPKLNQLIHAVIDRDEEILKSEDQQVTGLTHQNVIDLETPKLEV 153
Query: 479 TCPPALDDSKLVCISSFEDVLPGHGGQNYNNNEVVILDSDDEEGSFGSIKTRLAFASNVE 658
L ++ + H Q + ++ +DSD+E+ G K+ + + ++ E
Sbjct: 154 QQITGLTLQNVIDLEGENTEKDVHAAQIHG---LIHIDSDEEDD--GDKKSIVPYEASDE 208
Query: 659 ----------PLRVEMPQD---------FQLHYRNDMR----VVSETVRSTVLDANQKAS 769
P +D ++ D R +V + D ++K+
Sbjct: 209 EDGRDKKIIVPYEASDEEDGRDKKIIVPYEASDEEDGRDKKIIVPYEASNEEDDRDKKSF 268
Query: 770 WQYQEVV---LMKPINENGTMDIEGKDLQEGNAVREEQKT-LSNEAETKKDEGLYVGVQD 937
+ EVV L+ P + T++ G + +T +S + T+ D+G+Y+GVQ+
Sbjct: 269 VAFHEVVSPRLVAPSPASKTVEYHTPIPYHGETEDLKIETSISGKDNTRGDKGVYIGVQE 328
Query: 938 NKLSHESSPQSDSDDGLGDIWREMTLALECSKDATGDTVEHNE-DEGKDCDHSFILKDDL 1114
+ + + DDGL DIW+EM++A+ECSKD + + E E +DCDHSFILKDDL
Sbjct: 329 VE---DHQGDTADDDGLEDIWKEMSMAIECSKDTYVNPLPDEEVKEDEDCDHSFILKDDL 385
Query: 1115 GYVCRVCGVIQKSIDTIFDYQWGKVSKTTRTYMSESRSTKEREDREASAFTGVNTSHD-L 1291
GYVCRVCG+I + I+TIF++Q+ K ++TRTY S+SR+TK + D AF G+N + D L
Sbjct: 386 GYVCRVCGIIDRGIETIFEFQY-KAKRSTRTYASDSRNTKGKAD----AF-GINVAEDDL 439
Query: 1292 AVCDISVHPRHMKQMKAHQLEGFNFLVRNLVSGDPGGCILAHAPGSGKTFMIISFIQSFL 1471
V +IS HPRHMKQMK HQ+EGFNFL RNLV DPGGCILAHAPGSGKTFMIISF+QSFL
Sbjct: 440 IVTEISAHPRHMKQMKPHQVEGFNFLARNLVGDDPGGCILAHAPGSGKTFMIISFMQSFL 499
Query: 1472 AKYPHARPLVVLPKGILATWKKEFSIWQVEDFPLYDFYTSKAESREEQLIILKQWVEH 1645
KYP+ARPLVVLPKGIL+TWKKEF WQVED PLYDFYT KA+SR +QL +LKQWVEH
Sbjct: 500 GKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVEH 557