BLASTX nr result
ID: Coptis21_contig00003940
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00003940
(1831 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI18267.3| unnamed protein product [Vitis vinifera] 291 0.0
ref|XP_002269787.1| PREDICTED: probable ATP-dependent RNA helica... 291 0.0
ref|XP_003530375.1| PREDICTED: probable ATP-dependent RNA helica... 278 0.0
ref|NP_680142.2| DEA(D/H)-box RNA helicase family protein [Arabi... 283 0.0
ref|XP_002871121.1| predicted protein [Arabidopsis lyrata subsp.... 284 0.0
>emb|CBI18267.3| unnamed protein product [Vitis vinifera]
Length = 1162
Score = 291 bits (746), Expect(4) = 0.0
Identities = 149/211 (70%), Positives = 163/211 (77%)
Frame = +3
Query: 579 PDENPDSFLDRSVMEKVLQCQSSRMRNFQRSWQESPEGNRMLDFRKSLPAYSEKDRLLSA 758
P++NPDS LD SVMEKVLQ +S RMRN QR+WQESPEG +MLDFRKSLPA+ EK+RLL A
Sbjct: 191 PEDNPDSLLDGSVMEKVLQRRSLRMRNMQRAWQESPEGKKMLDFRKSLPAFREKERLLQA 250
Query: 759 IARNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVAERVSTE 938
IARNQV+V+SGETGCGKTTQLPQY+LESEIESGRGAFCSIICTQPRRISAM+V+ERVSTE
Sbjct: 251 IARNQVVVVSGETGCGKTTQLPQYILESEIESGRGAFCSIICTQPRRISAMSVSERVSTE 310
Query: 939 RGEPLGDSXXXXXXXXXXXXXXXXXXXXXXXXXXX*VGYKVRLEGMKGKNTHLLFCTSGI 1118
RGEPLG+S VGYKVRLEGMKGKNTHLLFCTSGI
Sbjct: 311 RGEPLGES----------------------------VGYKVRLEGMKGKNTHLLFCTSGI 342
Query: 1119 XXXXXXXXXXXXGVTHVFVDEIHERGMNEDF 1211
G+THVFVDEIHERGMNEDF
Sbjct: 343 LLRRLLSDRNLNGITHVFVDEIHERGMNEDF 373
Score = 262 bits (670), Expect(4) = 0.0
Identities = 124/144 (86%), Positives = 133/144 (92%)
Frame = +2
Query: 1313 ELFSNYFGGAPTIHILGFTYPVRSHFLEDVLEMTGYKLASFNQIDDYGQEKLWKTQKQLM 1492
ELFSN+FGGAPTIHI GFTYPVR+HFLEDVLEMTGYKL SFNQIDDYGQEK+WKTQKQL+
Sbjct: 400 ELFSNFFGGAPTIHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLV 459
Query: 1493 PRTRKNQITTLVEAALNKSNFENYSSRARDSLSCWTPDSIGFNLIEAVLCHICRKERQGA 1672
PR RKN+IT LVE AL KS+FENYSS RDSLSCWTPD +GFNLIEAVLCHICRKER GA
Sbjct: 460 PRKRKNKITALVEDALTKSSFENYSSGVRDSLSCWTPDCMGFNLIEAVLCHICRKERPGA 519
Query: 1673 VLVFMTGWDDISSLRDQIKAHPLL 1744
VLVFMTGW+DIS LRDQI+AHPLL
Sbjct: 520 VLVFMTGWEDISCLRDQIRAHPLL 543
Score = 205 bits (522), Expect(4) = 0.0
Identities = 103/130 (79%), Positives = 113/130 (86%)
Frame = +1
Query: 190 SCKGSSSVANIDEWKWKLSLLSRSEQDQEIISRDKRDIRDYEQISNLAKRMRLYRELYGK 369
S K SSSVANIDEWKWKLSLLSR+EQDQEI+SRDK+D RDYEQISNLA RM LY E+YGK
Sbjct: 61 SHKASSSVANIDEWKWKLSLLSRNEQDQEIVSRDKKDRRDYEQISNLANRMGLYSEIYGK 120
Query: 370 VVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGLVQEHLDRMQLSSGKINDNSGDP 549
V+V SKVPLPNYRPDLDDKRPQREVV+PLSLQRRVEGL+QEHLDRM LSSGK++D S D
Sbjct: 121 VMVVSKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHLDRMLLSSGKVSDCSDDA 180
Query: 550 RVVDQIEDLN 579
ED+N
Sbjct: 181 NGNGGFEDVN 190
Score = 34.3 bits (77), Expect(4) = 0.0
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 1765 RVLLLTCHGSMTTSEQ 1812
RVLLLTCHGSM TSEQ
Sbjct: 548 RVLLLTCHGSMATSEQ 563
>ref|XP_002269787.1| PREDICTED: probable ATP-dependent RNA helicase DHX36 [Vitis vinifera]
Length = 1136
Score = 291 bits (746), Expect(4) = 0.0
Identities = 149/211 (70%), Positives = 163/211 (77%)
Frame = +3
Query: 579 PDENPDSFLDRSVMEKVLQCQSSRMRNFQRSWQESPEGNRMLDFRKSLPAYSEKDRLLSA 758
P++NPDS LD SVMEKVLQ +S RMRN QR+WQESPEG +MLDFRKSLPA+ EK+RLL A
Sbjct: 191 PEDNPDSLLDGSVMEKVLQRRSLRMRNMQRAWQESPEGKKMLDFRKSLPAFREKERLLQA 250
Query: 759 IARNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVAERVSTE 938
IARNQV+V+SGETGCGKTTQLPQY+LESEIESGRGAFCSIICTQPRRISAM+V+ERVSTE
Sbjct: 251 IARNQVVVVSGETGCGKTTQLPQYILESEIESGRGAFCSIICTQPRRISAMSVSERVSTE 310
Query: 939 RGEPLGDSXXXXXXXXXXXXXXXXXXXXXXXXXXX*VGYKVRLEGMKGKNTHLLFCTSGI 1118
RGEPLG+S VGYKVRLEGMKGKNTHLLFCTSGI
Sbjct: 311 RGEPLGES----------------------------VGYKVRLEGMKGKNTHLLFCTSGI 342
Query: 1119 XXXXXXXXXXXXGVTHVFVDEIHERGMNEDF 1211
G+THVFVDEIHERGMNEDF
Sbjct: 343 LLRRLLSDRNLNGITHVFVDEIHERGMNEDF 373
Score = 262 bits (670), Expect(4) = 0.0
Identities = 124/144 (86%), Positives = 133/144 (92%)
Frame = +2
Query: 1313 ELFSNYFGGAPTIHILGFTYPVRSHFLEDVLEMTGYKLASFNQIDDYGQEKLWKTQKQLM 1492
ELFSN+FGGAPTIHI GFTYPVR+HFLEDVLEMTGYKL SFNQIDDYGQEK+WKTQKQL+
Sbjct: 400 ELFSNFFGGAPTIHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLV 459
Query: 1493 PRTRKNQITTLVEAALNKSNFENYSSRARDSLSCWTPDSIGFNLIEAVLCHICRKERQGA 1672
PR RKN+IT LVE AL KS+FENYSS RDSLSCWTPD +GFNLIEAVLCHICRKER GA
Sbjct: 460 PRKRKNKITALVEDALTKSSFENYSSGVRDSLSCWTPDCMGFNLIEAVLCHICRKERPGA 519
Query: 1673 VLVFMTGWDDISSLRDQIKAHPLL 1744
VLVFMTGW+DIS LRDQI+AHPLL
Sbjct: 520 VLVFMTGWEDISCLRDQIRAHPLL 543
Score = 205 bits (522), Expect(4) = 0.0
Identities = 103/130 (79%), Positives = 113/130 (86%)
Frame = +1
Query: 190 SCKGSSSVANIDEWKWKLSLLSRSEQDQEIISRDKRDIRDYEQISNLAKRMRLYRELYGK 369
S K SSSVANIDEWKWKLSLLSR+EQDQEI+SRDK+D RDYEQISNLA RM LY E+YGK
Sbjct: 61 SHKASSSVANIDEWKWKLSLLSRNEQDQEIVSRDKKDRRDYEQISNLANRMGLYSEIYGK 120
Query: 370 VVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGLVQEHLDRMQLSSGKINDNSGDP 549
V+V SKVPLPNYRPDLDDKRPQREVV+PLSLQRRVEGL+QEHLDRM LSSGK++D S D
Sbjct: 121 VMVVSKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHLDRMLLSSGKVSDCSDDA 180
Query: 550 RVVDQIEDLN 579
ED+N
Sbjct: 181 NGNGGFEDVN 190
Score = 34.3 bits (77), Expect(4) = 0.0
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 1765 RVLLLTCHGSMTTSEQ 1812
RVLLLTCHGSM TSEQ
Sbjct: 548 RVLLLTCHGSMATSEQ 563
>ref|XP_003530375.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1161
Score = 278 bits (711), Expect(4) = 0.0
Identities = 144/210 (68%), Positives = 157/210 (74%)
Frame = +3
Query: 582 DENPDSFLDRSVMEKVLQCQSSRMRNFQRSWQESPEGNRMLDFRKSLPAYSEKDRLLSAI 761
DEN DSF+D SVMEKVLQ +S RMRN QR+WQESPEG ++L+FRKSLP++ EK LL AI
Sbjct: 217 DENADSFVDESVMEKVLQKRSLRMRNMQRAWQESPEGRKLLEFRKSLPSFKEKQGLLQAI 276
Query: 762 ARNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVAERVSTER 941
A NQVIVISGETGCGKTTQLP YVLESE+ESGRGAFCSIICTQPRRISAMAVAERVS ER
Sbjct: 277 AHNQVIVISGETGCGKTTQLPHYVLESEVESGRGAFCSIICTQPRRISAMAVAERVSAER 336
Query: 942 GEPLGDSXXXXXXXXXXXXXXXXXXXXXXXXXXX*VGYKVRLEGMKGKNTHLLFCTSGIX 1121
GEPLG++ VG+KVRLEGMKGKNTHLLFCTSGI
Sbjct: 337 GEPLGET----------------------------VGFKVRLEGMKGKNTHLLFCTSGIL 368
Query: 1122 XXXXXXXXXXXGVTHVFVDEIHERGMNEDF 1211
G+THVFVDEIHERGMNEDF
Sbjct: 369 LRRLLSDRNLNGITHVFVDEIHERGMNEDF 398
Score = 260 bits (665), Expect(4) = 0.0
Identities = 123/144 (85%), Positives = 132/144 (91%)
Frame = +2
Query: 1313 ELFSNYFGGAPTIHILGFTYPVRSHFLEDVLEMTGYKLASFNQIDDYGQEKLWKTQKQLM 1492
ELFSNYFGGAPT HI GFTYPVR+HFLED+LEMTGYKL SFNQIDDYGQEKLWKTQKQL
Sbjct: 425 ELFSNYFGGAPTFHIPGFTYPVRAHFLEDILEMTGYKLTSFNQIDDYGQEKLWKTQKQLA 484
Query: 1493 PRTRKNQITTLVEAALNKSNFENYSSRARDSLSCWTPDSIGFNLIEAVLCHICRKERQGA 1672
PR RKNQIT LVE AL+ S+FENYSSRARDSL+ W PD IGFNLIEAVLCHICRKER GA
Sbjct: 485 PRKRKNQITALVEDALSNSSFENYSSRARDSLTSWAPDCIGFNLIEAVLCHICRKERPGA 544
Query: 1673 VLVFMTGWDDISSLRDQIKAHPLL 1744
VLVFMTGW+DISSL+DQ+KAHPL+
Sbjct: 545 VLVFMTGWEDISSLKDQLKAHPLV 568
Score = 197 bits (502), Expect(4) = 0.0
Identities = 94/128 (73%), Positives = 114/128 (89%)
Frame = +1
Query: 196 KGSSSVANIDEWKWKLSLLSRSEQDQEIISRDKRDIRDYEQISNLAKRMRLYRELYGKVV 375
+ SS+VAN+DEWKWKLS+L RSE+DQEI+SRD++D RDYEQI+NLAKRM LY EL+GKVV
Sbjct: 88 QASSTVANVDEWKWKLSMLLRSEKDQEIVSRDRKDRRDYEQIANLAKRMGLYSELFGKVV 147
Query: 376 VASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGLVQEHLDRMQLSSGKINDNSGDPRV 555
VASKVPLPNYRPDLDDKRPQREVV+PLSLQRRVEGL+QE+LDR+QL+S K D+ D
Sbjct: 148 VASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYLDRLQLNSAKTTDSLDDVNS 207
Query: 556 VDQIEDLN 579
+Q++D+N
Sbjct: 208 TNQVKDIN 215
Score = 34.3 bits (77), Expect(4) = 0.0
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 1765 RVLLLTCHGSMTTSEQ 1812
RVLLLTCHGSM TSEQ
Sbjct: 573 RVLLLTCHGSMATSEQ 588
>ref|NP_680142.2| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
gi|10178028|dbj|BAB11511.1| ATP-dependent RNA helicase
A-like protein [Arabidopsis thaliana]
gi|332003418|gb|AED90801.1| DEA(D/H)-box RNA helicase
family protein [Arabidopsis thaliana]
Length = 1161
Score = 283 bits (724), Expect(4) = 0.0
Identities = 145/211 (68%), Positives = 161/211 (76%)
Frame = +3
Query: 579 PDENPDSFLDRSVMEKVLQCQSSRMRNFQRSWQESPEGNRMLDFRKSLPAYSEKDRLLSA 758
PDEN DSFLD SVMEKVLQ +S RMRN QR+WQESPEG ML+FRK+LP++ +K+RLL A
Sbjct: 213 PDENSDSFLDGSVMEKVLQRRSMRMRNMQRTWQESPEGRTMLEFRKTLPSFKDKERLLQA 272
Query: 759 IARNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVAERVSTE 938
IARNQVIV+SGETGCGKTTQLPQY+LESEIESGRGAFC+IICTQPRRISAMAV+ERVS E
Sbjct: 273 IARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAE 332
Query: 939 RGEPLGDSXXXXXXXXXXXXXXXXXXXXXXXXXXX*VGYKVRLEGMKGKNTHLLFCTSGI 1118
RGEPLG++ VG+KVRLEGM+GKNTHLLFCTSGI
Sbjct: 333 RGEPLGET----------------------------VGFKVRLEGMRGKNTHLLFCTSGI 364
Query: 1119 XXXXXXXXXXXXGVTHVFVDEIHERGMNEDF 1211
GVTHVFVDEIHERGMNEDF
Sbjct: 365 LLRRLLSDRNLNGVTHVFVDEIHERGMNEDF 395
Score = 258 bits (659), Expect(4) = 0.0
Identities = 122/144 (84%), Positives = 132/144 (91%)
Frame = +2
Query: 1313 ELFSNYFGGAPTIHILGFTYPVRSHFLEDVLEMTGYKLASFNQIDDYGQEKLWKTQKQLM 1492
ELFSNY+GGAPTIHI GFT+PV++HFLEDVLE+TGYKL SFNQ+DDYGQEK WKTQKQLM
Sbjct: 422 ELFSNYYGGAPTIHIPGFTHPVKAHFLEDVLEITGYKLTSFNQVDDYGQEKTWKTQKQLM 481
Query: 1493 PRTRKNQITTLVEAALNKSNFENYSSRARDSLSCWTPDSIGFNLIEAVLCHICRKERQGA 1672
PR RKNQITTLVE AL+KSNFE+Y+SR RDSLS W PD IGFNLIEAVLCHICRKER GA
Sbjct: 482 PRKRKNQITTLVEEALSKSNFESYNSRTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGA 541
Query: 1673 VLVFMTGWDDISSLRDQIKAHPLL 1744
VLVF+TGWDDI SL DQIKAHPLL
Sbjct: 542 VLVFLTGWDDIRSLSDQIKAHPLL 565
Score = 196 bits (497), Expect(4) = 0.0
Identities = 97/127 (76%), Positives = 108/127 (85%)
Frame = +1
Query: 196 KGSSSVANIDEWKWKLSLLSRSEQDQEIISRDKRDIRDYEQISNLAKRMRLYRELYGKVV 375
K SSSVAN+DEWKWKL +L ++ +QEI+SRDKRD RDYEQISNLAKRM LY E+YGKVV
Sbjct: 86 KASSSVANVDEWKWKLGILLANDSEQEIVSRDKRDRRDYEQISNLAKRMGLYSEIYGKVV 145
Query: 376 VASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGLVQEHLDRMQLSSGKINDNSGDPRV 555
VASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGL+QEHLD QLSSGK N+ D +
Sbjct: 146 VASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGLLQEHLDSQQLSSGKANECVADSQP 205
Query: 556 VDQIEDL 576
Q E+L
Sbjct: 206 PKQTEEL 212
Score = 30.8 bits (68), Expect(4) = 0.0
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1
Query: 1765 RVLLLTCHGSMTTSEQ 1812
RVLLL CHGSM T+EQ
Sbjct: 570 RVLLLMCHGSMATAEQ 585
>ref|XP_002871121.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316958|gb|EFH47380.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1160
Score = 284 bits (727), Expect(4) = 0.0
Identities = 146/211 (69%), Positives = 161/211 (76%)
Frame = +3
Query: 579 PDENPDSFLDRSVMEKVLQCQSSRMRNFQRSWQESPEGNRMLDFRKSLPAYSEKDRLLSA 758
PDEN DSFLD SVMEKVLQ +S RMRN QR+WQESPEG ML+FRKSLP++ +K+RLL A
Sbjct: 214 PDENSDSFLDGSVMEKVLQRRSMRMRNMQRTWQESPEGRTMLEFRKSLPSFKDKERLLQA 273
Query: 759 IARNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVAERVSTE 938
IARNQVIV+SGETGCGKTTQLPQY+LESEIESGRGAFC+IICTQPRRISAMAV+ERVS E
Sbjct: 274 IARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAE 333
Query: 939 RGEPLGDSXXXXXXXXXXXXXXXXXXXXXXXXXXX*VGYKVRLEGMKGKNTHLLFCTSGI 1118
RGEPLG++ VG+KVRLEGM+GKNTHLLFCTSGI
Sbjct: 334 RGEPLGET----------------------------VGFKVRLEGMRGKNTHLLFCTSGI 365
Query: 1119 XXXXXXXXXXXXGVTHVFVDEIHERGMNEDF 1211
GVTHVFVDEIHERGMNEDF
Sbjct: 366 LLRRLLSDRNLNGVTHVFVDEIHERGMNEDF 396
Score = 255 bits (652), Expect(4) = 0.0
Identities = 121/144 (84%), Positives = 131/144 (90%)
Frame = +2
Query: 1313 ELFSNYFGGAPTIHILGFTYPVRSHFLEDVLEMTGYKLASFNQIDDYGQEKLWKTQKQLM 1492
ELFSNY+GGAPTIHI GFT+PV++HFLEDVLE+TGYKL SFNQ+DDYGQEK WKTQKQLM
Sbjct: 423 ELFSNYYGGAPTIHIPGFTHPVKAHFLEDVLEITGYKLTSFNQVDDYGQEKTWKTQKQLM 482
Query: 1493 PRTRKNQITTLVEAALNKSNFENYSSRARDSLSCWTPDSIGFNLIEAVLCHICRKERQGA 1672
PR RKN ITTLVE AL+KSNFE+Y+SR RDSLS W PD IGFNLIEAVLCHICRKER GA
Sbjct: 483 PRKRKNLITTLVEEALSKSNFESYNSRTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGA 542
Query: 1673 VLVFMTGWDDISSLRDQIKAHPLL 1744
VLVF+TGWDDI SL DQIKAHPLL
Sbjct: 543 VLVFLTGWDDIRSLSDQIKAHPLL 566
Score = 196 bits (498), Expect(4) = 0.0
Identities = 97/127 (76%), Positives = 109/127 (85%)
Frame = +1
Query: 196 KGSSSVANIDEWKWKLSLLSRSEQDQEIISRDKRDIRDYEQISNLAKRMRLYRELYGKVV 375
K SSSVAN+DEWKWKL +L ++ +QEI+SRDKRD RDYEQIS+LAKRM LY E+YGKVV
Sbjct: 87 KASSSVANVDEWKWKLGILLANDSEQEIVSRDKRDRRDYEQISSLAKRMGLYSEIYGKVV 146
Query: 376 VASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGLVQEHLDRMQLSSGKINDNSGDPRV 555
VASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGL+QEHLDR QLSSGK N+ D +
Sbjct: 147 VASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGLLQEHLDRQQLSSGKANECVADSQP 206
Query: 556 VDQIEDL 576
Q E+L
Sbjct: 207 PKQTEEL 213
Score = 30.8 bits (68), Expect(4) = 0.0
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1
Query: 1765 RVLLLTCHGSMTTSEQ 1812
RVLLL CHGSM T+EQ
Sbjct: 571 RVLLLMCHGSMATAEQ 586