BLASTX nr result
ID: Coptis21_contig00003938
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00003938
(2364 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002512730.1| pentatricopeptide repeat-containing protein,... 513 e-142
ref|XP_002263537.1| PREDICTED: pentatricopeptide repeat-containi... 509 e-141
emb|CBI25186.3| unnamed protein product [Vitis vinifera] 509 e-141
ref|XP_002332054.1| predicted protein [Populus trichocarpa] gi|2... 506 e-140
ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containi... 486 e-134
>ref|XP_002512730.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547741|gb|EEF49233.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 552
Score = 513 bits (1320), Expect = e-142
Identities = 244/425 (57%), Positives = 320/425 (75%), Gaps = 2/425 (0%)
Frame = -2
Query: 2027 LVDGVVETLRETKEFTSETEAMDFLDKVEEGVQLDGSLVCSVVWALRNEWELALLGFKWG 1848
L G++ETL+ F E EAM +D GV+ + +LV SV+W LR +W+LA LGFKWG
Sbjct: 90 LTQGLLETLKRAAYFPGEAEAMACIDG--SGVKANINLVYSVIWELRKDWKLAFLGFKWG 147
Query: 1847 QKLACIDSRAWDLMVLVLGQNKRFGTAWCLIRDMHRSSLNARRALLIMIECYAVANCPGK 1668
+K CID ++ +L+V +LG +++F AW +IRDMH+ S+N ++ +LIMI+ YA A+ PGK
Sbjct: 148 EKWGCIDEKSCELIVWILGNHRKFNNAWIVIRDMHQLSMNIQQTMLIMIDRYAAADNPGK 207
Query: 1667 SIRTFEAMEKFRISRDSKALDALLHSLCKNGNIEEAQEFMQQNKDLLPLRTETFNIILNG 1488
+I F MEKF+++ D +A +L+++LC +G IEEA+EFM NK L PL TE FN+ILNG
Sbjct: 208 AIEVFNIMEKFKMAPDEEAFYSLMNALCNHGYIEEAEEFMVVNKKLFPLETEGFNVILNG 267
Query: 1487 WCNISLDLVEAKRVWREMSNCCIVPDAVSYSHMISCFSRVGDLFHSLRLYDEMKKRGWIP 1308
WC+I ++L+EAKRVWREMS CCI P+A SY+HMISCFS+VG+LF SLRLYDEMKKRGW+P
Sbjct: 268 WCSICVNLLEAKRVWREMSKCCITPNATSYTHMISCFSKVGNLFDSLRLYDEMKKRGWLP 327
Query: 1307 GLDVYNSLIYVLTRENCLNEAFNIVDKIKEAGLLPDSTTYNSMILPLCEAHNLEEAKSVF 1128
G++VYNSLIYVLTRENC EA +DK+KE GL PDSTTYNSMI PLCE L EA+SV
Sbjct: 328 GMEVYNSLIYVLTRENCFKEALRFLDKMKEVGLQPDSTTYNSMIRPLCEGKKLVEARSVL 387
Query: 1127 ATMVSMGLDPTSETYHAFLQVESVD--ATVELLKQMREAGYGPDGHTFLLILRKLLKSKQ 954
ATM+ + PT ETYHA L+VE+ D AT+E+L +M AG P TFLL+L K K +Q
Sbjct: 388 ATMIEENISPTMETYHALLEVENSDFEATLEVLNRMTVAGLAPTDDTFLLVLAKFFKLEQ 447
Query: 953 PDNALRIWVEMMKYEIVPDSGHYSVMVRGLSLCGWLAKARKFYDDMKSRGFPDDPKLEKV 774
+NAL++W+EM +YE+ P+ HY ++V GL CG LAKAR+ Y DM+S GF DDPKL+K+
Sbjct: 448 AENALKMWIEMKQYEVTPNLTHYKILVEGLVRCGLLAKARECYADMRSNGFTDDPKLQKM 507
Query: 773 LKDPV 759
LK+PV
Sbjct: 508 LKEPV 512
>ref|XP_002263537.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Vitis vinifera]
Length = 537
Score = 509 bits (1311), Expect = e-141
Identities = 249/441 (56%), Positives = 322/441 (73%)
Frame = -2
Query: 2027 LVDGVVETLRETKEFTSETEAMDFLDKVEEGVQLDGSLVCSVVWALRNEWELALLGFKWG 1848
L G+ E L+ + +SE E M LD GV+ + LV +W LR +W LA F WG
Sbjct: 78 LESGLPELLKRLEGLSSEAEVMAVLDG--SGVEPNQELVYWAIWGLREDWRLAYWVFNWG 135
Query: 1847 QKLACIDSRAWDLMVLVLGQNKRFGTAWCLIRDMHRSSLNARRALLIMIECYAVANCPGK 1668
+K C R L++ +LG K+FG AWCLIR++HRSS++ RRA+LIMI+ Y AN P K
Sbjct: 136 EKWGCNSERTRGLVIWILGNCKKFGVAWCLIRELHRSSVDTRRAMLIMIDRYTAANDPCK 195
Query: 1667 SIRTFEAMEKFRISRDSKALDALLHSLCKNGNIEEAQEFMQQNKDLLPLRTETFNIILNG 1488
+I+TF MEKFR+S D +A LL +LCK+GN+E+A+E M QNK L PL TE FNIILNG
Sbjct: 196 AIKTFHIMEKFRLSPDQEAFYTLLTALCKHGNVEDAEELMFQNKKLFPLETEGFNIILNG 255
Query: 1487 WCNISLDLVEAKRVWREMSNCCIVPDAVSYSHMISCFSRVGDLFHSLRLYDEMKKRGWIP 1308
W N+SLD+ EAKR+WREMS CCIVP+A +Y+ MISCFS+ G+LF SLRL+D+MKKRGWIP
Sbjct: 256 WSNVSLDIFEAKRIWREMSKCCIVPNATTYTLMISCFSKFGNLFDSLRLFDDMKKRGWIP 315
Query: 1307 GLDVYNSLIYVLTRENCLNEAFNIVDKIKEAGLLPDSTTYNSMILPLCEAHNLEEAKSVF 1128
GL+VYNSLIYVLT ENCL EA I+ KIKE GL DS +YN MI PLC+A LEEA+++
Sbjct: 316 GLEVYNSLIYVLTHENCLTEALKILGKIKEMGLQLDSASYNCMIRPLCKAKKLEEARTIL 375
Query: 1127 ATMVSMGLDPTSETYHAFLQVESVDATVELLKQMREAGYGPDGHTFLLILRKLLKSKQPD 948
A M+ L PT+ETYHAFL+ S + T E+LK +R AG+GP+G TFLLIL L K QP+
Sbjct: 376 AAMIGENLGPTTETYHAFLEGASYEETFEVLKNLRTAGFGPNGDTFLLILDNLFKLDQPE 435
Query: 947 NALRIWVEMMKYEIVPDSGHYSVMVRGLSLCGWLAKARKFYDDMKSRGFPDDPKLEKVLK 768
NAL+IWVEM ++++VP S HY V++ GL+ GWL KAR+ Y +M+S+GF DDPKL+K+LK
Sbjct: 436 NALKIWVEMKQFDVVPGSEHYKVLIEGLTKFGWLVKARELYAEMRSKGFLDDPKLKKLLK 495
Query: 767 DPVGSVGEFGKQQGRHREEDT 705
DPV G+ G+++G R+ T
Sbjct: 496 DPV--EGDSGEREGWMRQGKT 514
>emb|CBI25186.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 509 bits (1311), Expect = e-141
Identities = 249/441 (56%), Positives = 322/441 (73%)
Frame = -2
Query: 2027 LVDGVVETLRETKEFTSETEAMDFLDKVEEGVQLDGSLVCSVVWALRNEWELALLGFKWG 1848
L G+ E L+ + +SE E M LD GV+ + LV +W LR +W LA F WG
Sbjct: 78 LESGLPELLKRLEGLSSEAEVMAVLDG--SGVEPNQELVYWAIWGLREDWRLAYWVFNWG 135
Query: 1847 QKLACIDSRAWDLMVLVLGQNKRFGTAWCLIRDMHRSSLNARRALLIMIECYAVANCPGK 1668
+K C R L++ +LG K+FG AWCLIR++HRSS++ RRA+LIMI+ Y AN P K
Sbjct: 136 EKWGCNSERTRGLVIWILGNCKKFGVAWCLIRELHRSSVDTRRAMLIMIDRYTAANDPCK 195
Query: 1667 SIRTFEAMEKFRISRDSKALDALLHSLCKNGNIEEAQEFMQQNKDLLPLRTETFNIILNG 1488
+I+TF MEKFR+S D +A LL +LCK+GN+E+A+E M QNK L PL TE FNIILNG
Sbjct: 196 AIKTFHIMEKFRLSPDQEAFYTLLTALCKHGNVEDAEELMFQNKKLFPLETEGFNIILNG 255
Query: 1487 WCNISLDLVEAKRVWREMSNCCIVPDAVSYSHMISCFSRVGDLFHSLRLYDEMKKRGWIP 1308
W N+SLD+ EAKR+WREMS CCIVP+A +Y+ MISCFS+ G+LF SLRL+D+MKKRGWIP
Sbjct: 256 WSNVSLDIFEAKRIWREMSKCCIVPNATTYTLMISCFSKFGNLFDSLRLFDDMKKRGWIP 315
Query: 1307 GLDVYNSLIYVLTRENCLNEAFNIVDKIKEAGLLPDSTTYNSMILPLCEAHNLEEAKSVF 1128
GL+VYNSLIYVLT ENCL EA I+ KIKE GL DS +YN MI PLC+A LEEA+++
Sbjct: 316 GLEVYNSLIYVLTHENCLTEALKILGKIKEMGLQLDSASYNCMIRPLCKAKKLEEARTIL 375
Query: 1127 ATMVSMGLDPTSETYHAFLQVESVDATVELLKQMREAGYGPDGHTFLLILRKLLKSKQPD 948
A M+ L PT+ETYHAFL+ S + T E+LK +R AG+GP+G TFLLIL L K QP+
Sbjct: 376 AAMIGENLGPTTETYHAFLEGASYEETFEVLKNLRTAGFGPNGDTFLLILDNLFKLDQPE 435
Query: 947 NALRIWVEMMKYEIVPDSGHYSVMVRGLSLCGWLAKARKFYDDMKSRGFPDDPKLEKVLK 768
NAL+IWVEM ++++VP S HY V++ GL+ GWL KAR+ Y +M+S+GF DDPKL+K+LK
Sbjct: 436 NALKIWVEMKQFDVVPGSEHYKVLIEGLTKFGWLVKARELYAEMRSKGFLDDPKLKKLLK 495
Query: 767 DPVGSVGEFGKQQGRHREEDT 705
DPV G+ G+++G R+ T
Sbjct: 496 DPV--EGDSGEREGWMRQGKT 514
>ref|XP_002332054.1| predicted protein [Populus trichocarpa] gi|222831940|gb|EEE70417.1|
predicted protein [Populus trichocarpa]
Length = 444
Score = 506 bits (1303), Expect = e-140
Identities = 244/418 (58%), Positives = 310/418 (74%)
Frame = -2
Query: 1979 SETEAMDFLDKVEEGVQLDGSLVCSVVWALRNEWELALLGFKWGQKLACIDSRAWDLMVL 1800
SE EAM LD E G++ + +LV SV+W LR EW LA L FKWG K C+D +A +LMV
Sbjct: 7 SEAEAMASLD--ESGIRANQNLVYSVIWELREEWRLAFLAFKWGDKWGCVDEKACELMVW 64
Query: 1799 VLGQNKRFGTAWCLIRDMHRSSLNARRALLIMIECYAVANCPGKSIRTFEAMEKFRISRD 1620
VLG +++F TAW LIRD+HRS ++ R+A+LIMI+ YA AN PGK+I F M+KFR++ D
Sbjct: 65 VLGNHRKFNTAWILIRDLHRSLMSTRKAMLIMIDRYAAANVPGKAIYAFRIMDKFRMTPD 124
Query: 1619 SKALDALLHSLCKNGNIEEAQEFMQQNKDLLPLRTETFNIILNGWCNISLDLVEAKRVWR 1440
+A LL+ LCKNGNIEEA+EFM NK PL E FNIILNGWCNI +D+ EAKR+WR
Sbjct: 125 EEAFYFLLNVLCKNGNIEEAEEFMLVNKKFFPLEVEGFNIILNGWCNICVDVFEAKRIWR 184
Query: 1439 EMSNCCIVPDAVSYSHMISCFSRVGDLFHSLRLYDEMKKRGWIPGLDVYNSLIYVLTREN 1260
EMS CI PDA +Y+HMISCFS+VG+LF SLRLYD MKKRGW+PG++VYNSL+Y+LTREN
Sbjct: 185 EMSKYCIDPDATTYTHMISCFSKVGNLFDSLRLYDGMKKRGWVPGIEVYNSLVYILTREN 244
Query: 1259 CLNEAFNIVDKIKEAGLLPDSTTYNSMILPLCEAHNLEEAKSVFATMVSMGLDPTSETYH 1080
C EA I+DK+KE GL DS TYNSMI PLCEA LE+A+S+ A M+ + PT ETYH
Sbjct: 245 CFKEALKILDKMKETGLQRDSATYNSMIRPLCEAKKLEDARSLMAAMIEENVSPTIETYH 304
Query: 1079 AFLQVESVDATVELLKQMREAGYGPDGHTFLLILRKLLKSKQPDNALRIWVEMMKYEIVP 900
AFLQ + T E+L +M+ AG GP TFLL+L K K +QP+NAL+IWVEM +YE+
Sbjct: 305 AFLQGIVFEETFEVLDRMKIAGLGPTEDTFLLLLAKFFKLEQPENALKIWVEMKQYEVAS 364
Query: 899 DSGHYSVMVRGLSLCGWLAKARKFYDDMKSRGFPDDPKLEKVLKDPVGSVGEFGKQQG 726
+ HY+VMV GL+ CG L KAR++Y +M+S G+ DDPK++K+LK PV + K+ G
Sbjct: 365 NLTHYTVMVEGLARCGLLTKAREYYAEMRSNGYSDDPKIQKMLKVPVQDKNDKRKKLG 422
>ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Cucumis sativus]
gi|449509164|ref|XP_004163514.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Cucumis sativus]
Length = 547
Score = 486 bits (1250), Expect = e-134
Identities = 235/435 (54%), Positives = 312/435 (71%), Gaps = 1/435 (0%)
Frame = -2
Query: 2012 VETLRETKEFTSETEAMDFLDKVEEGVQLDGSLVCSVVWALRNEWELALLGFKWGQKLAC 1833
+E + SE EA+ LD+ + LD LV S +W LR++W+ +LL FKWG+K+
Sbjct: 87 IELFKRVALLPSEVEAVAALDEFDVKADLD--LVYSAIWVLRDDWKSSLLAFKWGEKVGA 144
Query: 1832 IDSRAWDLMVLVLGQNKRFGTAWCLIRDMHRSSLNARRALLIMIECYAVANCPGKSIRTF 1653
ID +LM+ VLG +K+F TAW LIR++H S LN+ +A+L+MI+ YA AN K+I+TF
Sbjct: 145 IDEEICNLMIWVLGNHKKFSTAWSLIRELHGSLLNSMQAMLVMIDRYAYANEASKAIKTF 204
Query: 1652 EAMEKFRISRDSKALDALLHSLCKNGNIEEAQEFMQQNKDLLPLRTETFNIILNGWCNIS 1473
MEKFR++ D +A LL+SLCK GNIEEA+EFM NK L PL TE+FNIILNGWCN++
Sbjct: 205 HMMEKFRLTPDQEAFHVLLNSLCKYGNIEEAEEFMFVNKKLFPLGTESFNIILNGWCNVT 264
Query: 1472 LDLVEAKRVWREMSNCCIVPDAVSYSHMISCFSRVGDLFHSLRLYDEMKKRGWIPGLDVY 1293
+D+ EAKR+WREMS CCI+PD+ SY+HMISCFS+ G+LF SLR YD+MKKR WIP ++VY
Sbjct: 265 VDVFEAKRIWREMSKCCILPDSTSYTHMISCFSKNGNLFDSLRFYDQMKKRDWIPSVEVY 324
Query: 1292 NSLIYVLTRENCLNEAFNIVDKIKEAGLLPDSTTYNSMILPLCEAHNLEEAKSVFATMVS 1113
NSL YVLTRENC NEA I++KIKE GL PDSTTYNS+I PLCEA L+EAK V M
Sbjct: 325 NSLAYVLTRENCFNEALKILEKIKEVGLRPDSTTYNSLISPLCEAGKLDEAKDVLTMMTE 384
Query: 1112 MGLDPTSETYHAFLQVESVDATVELLKQMREAGYGPDGHTFLLILRKLLKSKQPDNALRI 933
+ PT ETYH+F+Q + ELLK+MR+ G GP TFL++ K + ++P+ AL +
Sbjct: 385 DNISPTIETYHSFIQAADSKMSFELLKRMRQDGLGPTEGTFLIMFNKSFELEEPEYALNV 444
Query: 932 WVEMMKYEIVPDSGHYSVMVRGLSLCGWLAKARKFYDDMKSRGFPDDPKLEKVLKDP-VG 756
WVEM +YE+ P HYSV+++GL+ CG L KAR+ YD+M GF PK++ +LK+P +G
Sbjct: 445 WVEMKRYEVFPSCEHYSVLIQGLATCGHLKKARELYDEMILHGFIAHPKIKTLLKEPDLG 504
Query: 755 SVGEFGKQQGRHREE 711
S+ E +QQ RH +
Sbjct: 505 SIDE-ARQQVRHNNK 518