BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003925
         (552 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002262666.1| PREDICTED: pre-mRNA-processing factor 17-lik...   187   7e-46
gb|ADN33838.1| pre-mRNA splicing factor [Cucumis melo subsp. melo]    186   2e-45
ref|XP_004155354.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-pro...   185   4e-45
ref|XP_004135243.1| PREDICTED: pre-mRNA-processing factor 17-lik...   185   4e-45
ref|XP_002315592.1| predicted protein [Populus trichocarpa] gi|2...   183   2e-44

>ref|XP_002262666.1| PREDICTED: pre-mRNA-processing factor 17-like [Vitis vinifera]
          Length = 583

 Score =  187 bits (476), Expect = 7e-46
 Identities = 104/202 (51%), Positives = 130/202 (64%), Gaps = 33/202 (16%)
 Frame = -3

Query: 508 QTDNILNDSP--SPFHL-IPCKTSAPNLSE-----------NKSIDPSQRVITYNPTYDQ 371
           +  N+ N SP  SP  + +P K+SAP + +           +K IDP Q V+ +NPTYDQ
Sbjct: 21  EDQNLDNSSPDSSPTRIALPSKSSAPKVDDTTLALAIANTNDKPIDPIQHVVPFNPTYDQ 80

Query: 370 LWAPIYGPAHPYAKDGIAQGMRNHKLGFV-----EPFLFDQQYHTFHKYAHPSD------ 224
           LWAPIYGPAHPYAKDGIAQGMRNHKLGFV     EPF+FD+QY+TFHKY + +D      
Sbjct: 81  LWAPIYGPAHPYAKDGIAQGMRNHKLGFVENAAIEPFIFDEQYNTFHKYGYAADPSASAG 140

Query: 223 -NMVGDMEKMKENDGISVYN------SXXXXXXXXXXXXXXXEGVDMEGVENPASEEWLK 65
            N VGD+E +++NDGISVYN                      E VD+E V+NPA++ WL 
Sbjct: 141 NNYVGDLEALEKNDGISVYNIPQHEQKKRKIEKKKESESEENEDVDVEEVQNPATDTWLL 200

Query: 64  KNRKSPWSGKK-GVVVELTEEQ 2
           KN+KSPW+GKK G+  ELTEEQ
Sbjct: 201 KNKKSPWAGKKEGLQTELTEEQ 222


>gb|ADN33838.1| pre-mRNA splicing factor [Cucumis melo subsp. melo]
          Length = 581

 Score =  186 bits (472), Expect = 2e-45
 Identities = 106/201 (52%), Positives = 126/201 (62%), Gaps = 37/201 (18%)
 Frame = -3

Query: 493 LNDSP--SPFHLIPCKTSAPNLSE--------------NKSIDPSQRVITYNPTYDQLWA 362
           L  SP  SP  LIP KTSAP + +              +K IDP+Q ++ +NPTYDQLWA
Sbjct: 20  LTSSPEASPPRLIPSKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWA 79

Query: 361 PIYGPAHPYAKDGIAQGMRNHKLGFV-----EPFLFDQQYHTFHKYAHPSD-------NM 218
           PIYGP+HPYAKDGIAQGMRNHKLGFV     EPF+FD+QY+TFHKY + +D       N 
Sbjct: 80  PIYGPSHPYAKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNY 139

Query: 217 VGDMEKMKENDGISVYN--SXXXXXXXXXXXXXXXEGVDME------GVENPASEEWLKK 62
           +GDME +++ND ISVYN                  E  DME       V+NPAS+ WL K
Sbjct: 140 IGDMEALQKNDAISVYNIPQHEQKKRKIEKKKEMSENEDMEEEVNPAEVDNPASDVWLMK 199

Query: 61  NRKSPWSGKK-GVVVELTEEQ 2
           NRKSPWSGKK G+  ELTEEQ
Sbjct: 200 NRKSPWSGKKEGLQTELTEEQ 220


>ref|XP_004155354.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing factor 17-like
           [Cucumis sativus]
          Length = 580

 Score =  185 bits (470), Expect = 4e-45
 Identities = 106/201 (52%), Positives = 127/201 (63%), Gaps = 37/201 (18%)
 Frame = -3

Query: 493 LNDSP--SPFHLIPCKTSAPNLSE--------------NKSIDPSQRVITYNPTYDQLWA 362
           L  SP  SP  L+P KTSAP + +              +K IDP+Q ++ +NPTYDQLWA
Sbjct: 20  LTSSPEASPPRLLPSKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWA 79

Query: 361 PIYGPAHPYAKDGIAQGMRNHKLGFV-----EPFLFDQQYHTFHKYAHPSD-------NM 218
           PIYGP+HPYAKDGIAQGMRNHKLGFV     EPF+FD+QY+TFHKY + +D       N 
Sbjct: 80  PIYGPSHPYAKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNY 139

Query: 217 VGDMEKMKENDGISVYN--SXXXXXXXXXXXXXXXEGVDME------GVENPASEEWLKK 62
           +GDME +++ND ISVYN                  E  DME       V+NPAS+ WL K
Sbjct: 140 IGDMEALEKNDAISVYNIPQHEQKKRKIEKKKKXSENEDMEEEVNPAEVDNPASDVWLMK 199

Query: 61  NRKSPWSGKK-GVVVELTEEQ 2
           NRKSPWSGKK G+  ELTEEQ
Sbjct: 200 NRKSPWSGKKEGLQTELTEEQ 220


>ref|XP_004135243.1| PREDICTED: pre-mRNA-processing factor 17-like [Cucumis sativus]
          Length = 580

 Score =  185 bits (470), Expect = 4e-45
 Identities = 105/201 (52%), Positives = 126/201 (62%), Gaps = 37/201 (18%)
 Frame = -3

Query: 493 LNDSP--SPFHLIPCKTSAPNLSE--------------NKSIDPSQRVITYNPTYDQLWA 362
           L  SP  SP  L+P KTSAP + +              +K IDP+Q ++ +NPTYDQLWA
Sbjct: 20  LTSSPEASPPRLLPSKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWA 79

Query: 361 PIYGPAHPYAKDGIAQGMRNHKLGFV-----EPFLFDQQYHTFHKYAHPSD-------NM 218
           PIYGP+HPYAKDGIAQGMRNHKLGFV     EPF+FD+QY+TFHKY + +D       N 
Sbjct: 80  PIYGPSHPYAKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNY 139

Query: 217 VGDMEKMKENDGISVYN--SXXXXXXXXXXXXXXXEGVDME------GVENPASEEWLKK 62
           +GDME +++ND ISVYN                  E  DME       V+NPAS+ WL K
Sbjct: 140 IGDMEALEKNDAISVYNIPQHEQKKRKIEKKKEMSENEDMEEEVNPAEVDNPASDVWLMK 199

Query: 61  NRKSPWSGKK-GVVVELTEEQ 2
           NRKSPWSGKK G+  ELTEEQ
Sbjct: 200 NRKSPWSGKKEGLQTELTEEQ 220


>ref|XP_002315592.1| predicted protein [Populus trichocarpa] gi|222864632|gb|EEF01763.1|
           predicted protein [Populus trichocarpa]
          Length = 573

 Score =  183 bits (464), Expect = 2e-44
 Identities = 99/207 (47%), Positives = 129/207 (62%), Gaps = 37/207 (17%)
 Frame = -3

Query: 511 FQTDNILNDSP------SPFHLIPCKTSAPNLSE------------NKSIDPSQRVITYN 386
           +Q D  L+ +P      SP  L+P K++AP + +            +K IDP Q V+ +N
Sbjct: 7   YQNDGELDQNPNSSPDSSPPRLLPSKSAAPKVDDTMLALTVANQMLSKPIDPVQHVVAFN 66

Query: 385 PTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVE-----PFLFDQQYHTFHKYAHPSD- 224
           PTYDQLWAP+ GPAHPYAKDGIAQGMRNHKLGFVE      F+FD+QY+TFHKY + +D 
Sbjct: 67  PTYDQLWAPVLGPAHPYAKDGIAQGMRNHKLGFVEDAAIDSFVFDEQYNTFHKYGYAADP 126

Query: 223 ------NMVGDMEKMKENDGISVYN------SXXXXXXXXXXXXXXXEGVDMEGVENPAS 80
                 N +GD++ +++N+GISVYN                      +G+D E VENPA+
Sbjct: 127 SASAGNNYIGDLDVLEKNNGISVYNIPQHEQKKRKIEKKTEAVEDDDDGMDKEEVENPAT 186

Query: 79  EEWLKKNRKSPWSGKK-GVVVELTEEQ 2
           + WL KNRKSPW+GKK G+  ELTEEQ
Sbjct: 187 DAWLMKNRKSPWAGKKEGLQTELTEEQ 213