BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003914
         (928 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF80479.1| PSI reaction center subunit II [Citrus sinensis]      360   2e-97
dbj|BAF80471.1| PSI reaction center subunit II [Citrus sinensis]...   360   2e-97
ref|XP_002281825.1| PREDICTED: photosystem I reaction center sub...   356   4e-96
ref|XP_002516772.1| Photosystem I reaction center subunit II, ch...   355   6e-96
ref|NP_001235355.1| photosystem I subunit PsaD [Glycine max] gi|...   345   7e-93

>dbj|BAF80479.1| PSI reaction center subunit II [Citrus sinensis]
          Length = 209

 Score =  360 bits (925), Expect = 2e-97
 Identities = 178/211 (84%), Positives = 189/211 (89%)
 Frame = -3

Query: 755 MAAQSALFTPTISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIVQKTVRAAAAEGKSTTE 576
           MA Q+ LFTP+I+T  +    L PWK +SS  FTSPKPL  S+ Q+TVRAA AEGK  TE
Sbjct: 1   MATQAGLFTPSITTTKTSKLPLNPWKPTSSFSFTSPKPLTFSMGQRTVRAAGAEGK--TE 58

Query: 575 APPTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTGGA 396
           AP  EAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPTGGA
Sbjct: 59  APTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 118

Query: 395 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 216
           AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 119 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 178

Query: 215 GRQGVGINARSIGKNVNPIEVKFTGKQSYDL 123
           GRQGVG+N RSIGKNV+PIEVKFTGKQ YDL
Sbjct: 179 GRQGVGLNYRSIGKNVSPIEVKFTGKQVYDL 209


>dbj|BAF80471.1| PSI reaction center subunit II [Citrus sinensis]
           gi|157678950|dbj|BAF80473.1| PSI reaction center subunit
           II [Citrus sinensis]
          Length = 209

 Score =  360 bits (925), Expect = 2e-97
 Identities = 178/211 (84%), Positives = 189/211 (89%)
 Frame = -3

Query: 755 MAAQSALFTPTISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIVQKTVRAAAAEGKSTTE 576
           MA Q+ LFTP+I T  +   +L PWK +SS  FTSPKPL  S+ Q+TVRAAAAE K  TE
Sbjct: 1   MATQAGLFTPSIITTKTSKLLLNPWKPTSSFSFTSPKPLTFSMAQRTVRAAAAEEK--TE 58

Query: 575 APPTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTGGA 396
           AP  EAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPTGGA
Sbjct: 59  APTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 118

Query: 395 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 216
           AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 119 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 178

Query: 215 GRQGVGINARSIGKNVNPIEVKFTGKQSYDL 123
           GRQGVG+N RSIGKNV+PIEVKFTGKQ YDL
Sbjct: 179 GRQGVGVNYRSIGKNVSPIEVKFTGKQVYDL 209


>ref|XP_002281825.1| PREDICTED: photosystem I reaction center subunit II, chloroplastic
           isoform 1 [Vitis vinifera]
           gi|359477510|ref|XP_003631987.1| PREDICTED: photosystem
           I reaction center subunit II, chloroplastic isoform 2
           [Vitis vinifera] gi|359477512|ref|XP_003631988.1|
           PREDICTED: photosystem I reaction center subunit II,
           chloroplastic isoform 3 [Vitis vinifera]
           gi|359477514|ref|XP_003631989.1| PREDICTED: photosystem
           I reaction center subunit II, chloroplastic isoform 4
           [Vitis vinifera] gi|147800882|emb|CAN62373.1|
           hypothetical protein VITISV_036477 [Vitis vinifera]
          Length = 204

 Score =  356 bits (914), Expect = 4e-96
 Identities = 178/213 (83%), Positives = 189/213 (88%)
 Frame = -3

Query: 761 MAMAAQSALFTPTISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIVQKTVRAAAAEGKST 582
           MAMA Q++LFTPT+S    G+RV VPWK SSSL FT+PK  KSS+  +T   A AE    
Sbjct: 1   MAMATQASLFTPTLS----GDRVTVPWKSSSSLSFTTPKLPKSSVAPRTTIRAMAE---- 52

Query: 581 TEAPPTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTG 402
            EAP  EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMPTG
Sbjct: 53  -EAPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTG 111

Query: 401 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 222
           GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 112 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 171

Query: 221 NPGRQGVGINARSIGKNVNPIEVKFTGKQSYDL 123
           NPGRQGVG+N RSIGKNVNPIEVKFTGKQ+YDL
Sbjct: 172 NPGRQGVGVNFRSIGKNVNPIEVKFTGKQAYDL 204


>ref|XP_002516772.1| Photosystem I reaction center subunit II, chloroplast precursor,
           putative [Ricinus communis] gi|223543860|gb|EEF45386.1|
           Photosystem I reaction center subunit II, chloroplast
           precursor, putative [Ricinus communis]
          Length = 208

 Score =  355 bits (912), Expect = 6e-96
 Identities = 177/214 (82%), Positives = 190/214 (88%), Gaps = 1/214 (0%)
 Frame = -3

Query: 761 MAMAAQSALFTPT-ISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIVQKTVRAAAAEGKS 585
           MAMA Q++LFTPT +STP S N  +VPWKQSS L   + KP K SI QKT++AAAAEGK+
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPRKYSIAQKTIKAAAAEGKT 60

Query: 584 TTEAPPTEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPT 405
                  EAPVGFTPP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMPT
Sbjct: 61  K------EAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPT 114

Query: 404 GGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 225
           GGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK
Sbjct: 115 GGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 174

Query: 224 VNPGRQGVGINARSIGKNVNPIEVKFTGKQSYDL 123
           VNPGR+GVG N RSIGKNV+PIEVKFTGKQ YDL
Sbjct: 175 VNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208


>ref|NP_001235355.1| photosystem I subunit PsaD [Glycine max]
           gi|148372347|gb|ABQ63097.1| photosystem I subunit PsaD
           [Glycine max] gi|255627695|gb|ACU14192.1| unknown
           [Glycine max]
          Length = 210

 Score =  345 bits (886), Expect = 7e-93
 Identities = 175/215 (81%), Positives = 189/215 (87%), Gaps = 2/215 (0%)
 Frame = -3

Query: 761 MAMAAQSALFTPTISTPSSGNRVLVPWKQSSSLCFTSPKPLKSSIVQKTVRAAAAEGKST 582
           MAMA Q++L TP +S   + +R  VPWKQ+SSL F+SPKPLK S   +T+RAAAA+   T
Sbjct: 1   MAMATQASLLTPPLSGLKASDRASVPWKQNSSLSFSSPKPLKFS---RTIRAAAAD--ET 55

Query: 581 TEAPPT--EAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMP 408
           TEAP     APVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMP
Sbjct: 56  TEAPAKVEAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMP 115

Query: 407 TGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 228
           TGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE
Sbjct: 116 TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 175

Query: 227 KVNPGRQGVGINARSIGKNVNPIEVKFTGKQSYDL 123
           KVN GRQGVG N RSIGKNV+PIEVKFTGKQ YDL
Sbjct: 176 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKQPYDL 210