BLASTX nr result

ID: Coptis21_contig00003907 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003907
         (1449 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002304824.1| predicted protein [Populus trichocarpa] gi|2...   110   9e-22
ref|XP_003598371.1| Serine/threonine protein kinase ATM [Medicag...   105   2e-20
ref|XP_002525583.1| hypothetical protein RCOM_0622510 [Ricinus c...   105   4e-20
ref|XP_003553721.1| PREDICTED: uncharacterized protein LOC100805...    62   4e-07
ref|NP_187194.1| PWWP domain-containing protein [Arabidopsis tha...    60   2e-06

>ref|XP_002304824.1| predicted protein [Populus trichocarpa] gi|222842256|gb|EEE79803.1|
            predicted protein [Populus trichocarpa]
          Length = 926

 Score =  110 bits (275), Expect = 9e-22
 Identities = 75/204 (36%), Positives = 107/204 (52%)
 Frame = +1

Query: 151  NSSKKELSLVIESGGSSEGNGRLSQLAVDISINSEQPNTFYPLNILNTSHSPVVSHASSR 330
            N++  E S  +    SSEG+          S+N+E+       NI  TS  P  S  S +
Sbjct: 751  NATSVETSRRVRMISSSEGS----------SMNNER-------NIPGTSDQPFKSKVSQQ 793

Query: 331  NAQFQSSKTDIKAECFTTLNMMFPKNFKLPSKDDLVKRFRSFGPLDSSETKVYSNMGSAQ 510
             A+   + ++       +L+M FPK+F LPSK DL+++F  FG +D  +TKV+  MGSAQ
Sbjct: 794  PAESTFTYSN-------SLHMKFPKDFNLPSKMDLIRKFSRFGRVDPLKTKVFQVMGSAQ 846

Query: 511  VVFLHHFDAKAAWHCAKTKKIFTGGADIRFWLGRQGHSRRGTNNIPNPSSFPTTGASISN 690
            VVF    DA AA+  AK K    G A + +WL R G  RRG N +   SS        SN
Sbjct: 847  VVFFEELDAVAAYQYAKRKNNLYGVATVLYWLDRSGQKRRGPNFLSPSSS--------SN 898

Query: 691  MKSCLGVSNPQGKKDSTKPHRVKF 762
            +KS L  S  +GK+D+ +  +V+F
Sbjct: 899  LKSSLKKSGRRGKEDNKRTRKVRF 922


>ref|XP_003598371.1| Serine/threonine protein kinase ATM [Medicago truncatula]
            gi|355487419|gb|AES68622.1| Serine/threonine protein
            kinase ATM [Medicago truncatula]
          Length = 682

 Score =  105 bits (263), Expect = 2e-20
 Identities = 74/204 (36%), Positives = 106/204 (51%)
 Frame = +1

Query: 145  EVNSSKKELSLVIESGGSSEGNGRLSQLAVDISINSEQPNTFYPLNILNTSHSPVVSHAS 324
            E N+S  ++  V+ S  S            DISI   +P     L   +   SP++  + 
Sbjct: 468  EANASATKVKSVLRSSSSVYQERLQRSCDGDISITPLKPKESARLKSFSGDRSPIIFSSK 527

Query: 325  SRNAQFQSSKTDIKAECFTTLNMMFPKNFKLPSKDDLVKRFRSFGPLDSSETKVYSNMGS 504
             R    + S+T +   C   LNM FPKNF LPSK+ L+K+F  FG +DSS T+V+   GS
Sbjct: 528  VR----EQSETHVPI-CSKFLNMKFPKNFNLPSKEHLIKKFSVFGTVDSSNTRVFCYTGS 582

Query: 505  AQVVFLHHFDAKAAWHCAKTKKIFTGGADIRFWLGRQGHSRRGTNNIPNPSSFPTTGASI 684
            A+V F    DA AA+  AK +K+  G A+IRFWL    H RR   N+ +    P+   + 
Sbjct: 583  ARVAFFKESDAVAAYQFAK-RKVQFGEANIRFWLDPFEHKRRKLKNLYH--VHPSAKLTG 639

Query: 685  SNMKSCLGVSNPQGKKDSTKPHRV 756
            S +KSCL  SN   K+++ K  R+
Sbjct: 640  SPLKSCLKKSNSL-KQENIKKRRM 662


>ref|XP_002525583.1| hypothetical protein RCOM_0622510 [Ricinus communis]
           gi|223535162|gb|EEF36842.1| hypothetical protein
           RCOM_0622510 [Ricinus communis]
          Length = 701

 Score =  105 bits (261), Expect = 4e-20
 Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 1/160 (0%)
 Frame = +1

Query: 298 HSPVVSHASSRNAQFQSSKTDIKAECFTTLNMMFPKNFKLPSKDDLVKRFRSFGPLDSSE 477
           HS V S AS +    Q S     ++ +  L+M FP++F LPS+ DL+++F  FG +DS  
Sbjct: 553 HSFVTSDASFKLKVVQQSAIGALSD-YQYLHMKFPRDFSLPSQKDLIRKFSRFGKVDSLR 611

Query: 478 TKVYSNMGSAQVVFLHHFDAKAAWHCAKTKKIFTGGADIRFWLGRQGHSRRGTNNIPNPS 657
           TK+++ +GSAQVVFLHH DA  A+   K KK   G A I FWL      RRG+  +    
Sbjct: 612 TKIFTRLGSAQVVFLHHLDAVTAYQYLKRKKNLFGEAKILFWLDPYEKKRRGSKFV---- 667

Query: 658 SFPTTGASISNMKSCLGVSN-PQGKKDSTKPHRVKFLSDS 774
                  S+ N+KSCL  S+   G++D     +V+FL ++
Sbjct: 668 ------VSLPNLKSCLKKSDRKHGQEDKKHTKKVRFLMET 701


>ref|XP_003553721.1| PREDICTED: uncharacterized protein LOC100805944 [Glycine max]
          Length = 1075

 Score = 62.0 bits (149), Expect = 4e-07
 Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
 Frame = +1

Query: 310  VSHASSRNAQFQSSK-TDIKAECF--TTLNMMFPKNFKLPSKDDLVKRFRSFGPLDSSET 480
            +S A S+  + +S+K  D  A+    T L + FP    LPS  +L  RF  FGP+D S  
Sbjct: 762  MSQAPSKLVKLESNKKVDCPAKAVEPTILMIKFPPETSLPSIAELKARFARFGPMDQSGF 821

Query: 481  KVYSNMGSAQVVFLHHFDAKAAWHCAKTKKIFTGGADIRFWLGRQGHS 624
            +V+ N  + +VVFLH  DA+AA+  +   +   G   +RF+L   G S
Sbjct: 822  RVFWNSSTCRVVFLHKVDAQAAYKYSVGSQSLFGSVGVRFFLREFGDS 869


>ref|NP_187194.1| PWWP domain-containing protein [Arabidopsis thaliana]
            gi|7596768|gb|AAF64539.1| hypothetical protein
            [Arabidopsis thaliana] gi|225898619|dbj|BAH30440.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332640719|gb|AEE74240.1| PWWP domain-containing
            protein [Arabidopsis thaliana]
          Length = 965

 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 62/226 (27%), Positives = 87/226 (38%), Gaps = 33/226 (14%)
 Frame = +1

Query: 379  TTLNMMFPKNFKLPSKDDLVKRFRSFGPLDSSETKVYSNMGSAQVVFLHHFDAKAAWHCA 558
            T L MMFP    LPS D L  RF  FG LD S  +V       +V FL+  DA+ A    
Sbjct: 743  TMLVMMFPPGESLPSIDLLKARFGRFGQLDQSAIRVSWKSSICRVGFLYKLDAQTALRYV 802

Query: 559  KTKKIFTGGADIRFWLGRQGHSRRGTNNIPNPSSFPTTGASIS----------------- 687
               K   G  ++ ++L     S    ++    +  P T   I+                 
Sbjct: 803  SGSKSLFGNVNVTYFLRDMKASSASGDHELKKAKRPKTDKPITKPLNQLLEQAPPVHQPN 862

Query: 688  -NMKSCL--------------GVSNPQGKKDSTKPHRVKFLS-DSKDVPPVPLEPKHGTC 819
              +KSCL               V    G+K++  P  V  L   S+D  P P+  +    
Sbjct: 863  IQLKSCLKKPGNNRNGNHRTVRVKFMLGEKETESPFSVSILPLSSQDSEPKPVNNQVDHV 922

Query: 820  TGSGSCKYSKDVGPDISPQMLVLLEKCNDMVSEMKDNLGLQSFYSL 957
                     K    DIS QM+ LL +CND V+ +   LG   ++SL
Sbjct: 923  EPPLDPSQLK---VDISLQMMELLTRCNDAVANVTGLLGYVPYHSL 965


Top