BLASTX nr result

ID: Coptis21_contig00003833 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003833
         (821 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding prot...   397   e-108
gb|ABK95931.1| unknown [Populus trichocarpa]                          389   e-106
gb|ABB55397.1| polypyrimidine tract-binding protein-like [Solanu...   375   e-102
gb|ABB02630.1| polypyrimidine tract-binding-like [Solanum tubero...   375   e-102
gb|AEG89705.1| polypyrimidine tract-binding protein 7 [Solanum t...   375   e-102

>ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform 1
           [Vitis vinifera] gi|296082938|emb|CBI22239.3| unnamed
           protein product [Vitis vinifera]
          Length = 449

 Score =  397 bits (1020), Expect = e-108
 Identities = 198/204 (97%), Positives = 199/204 (97%)
 Frame = +1

Query: 208 GQTQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFVDL 387
           GQ QFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEF+DL
Sbjct: 5   GQPQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFLDL 64

Query: 388 NQAIQMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSGGDVAGNVLLVTIEGVEAGDV 567
           NQAI MVSYYASSSEPAQVRGKTVYIQYSNR EIVNNKS GDV GNVLLVTIEGVEAGDV
Sbjct: 65  NQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDV 124

Query: 568 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV 747
           SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV
Sbjct: 125 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV 184

Query: 748 GSCHLRISYSAHTDLNIKFQSHRS 819
           GSCHLRISYSAHTDLNIKFQSHRS
Sbjct: 185 GSCHLRISYSAHTDLNIKFQSHRS 208



 Score = 91.7 bits (226), Expect = 2e-16
 Identities = 52/99 (52%), Positives = 64/99 (64%)
 Frame = +1

Query: 523 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNA 702
           NVLL +IE ++   V++DV+H VFSAFG V KIA FEK  G QALIQ+ D  TA+ A+ A
Sbjct: 243 NVLLASIENMQYA-VTVDVLHTVFSAFGTVQKIAIFEKNGGMQALIQYPDVTTAAVAKEA 301

Query: 703 LDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRS 819
           L+G  I         G C L +SYS HTDLN+K  S RS
Sbjct: 302 LEGHCI------YDGGYCKLHLSYSRHTDLNVKAHSDRS 334


>gb|ABK95931.1| unknown [Populus trichocarpa]
          Length = 473

 Score =  389 bits (999), Expect = e-106
 Identities = 192/204 (94%), Positives = 198/204 (97%)
 Frame = +1

Query: 208 GQTQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFVDL 387
           GQ QFRYTQTPSKVLHLRNLPWECTEEEL+ELCKPFG+IVNTKCNVGANRNQAFVEFVD 
Sbjct: 5   GQPQFRYTQTPSKVLHLRNLPWECTEEELIELCKPFGRIVNTKCNVGANRNQAFVEFVDQ 64

Query: 388 NQAIQMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSGGDVAGNVLLVTIEGVEAGDV 567
           NQAIQMVSYYASSS+PAQVRGKTVYIQYSNR EIVNNKS GD  GNVLLVTIEGVEAGDV
Sbjct: 65  NQAIQMVSYYASSSDPAQVRGKTVYIQYSNRHEIVNNKSPGDNPGNVLLVTIEGVEAGDV 124

Query: 568 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV 747
           SIDVIHLVFSAFG++HKIATFEKAAGFQALIQFTD+ETASSARNALDGRSIPRYLLPEHV
Sbjct: 125 SIDVIHLVFSAFGYLHKIATFEKAAGFQALIQFTDSETASSARNALDGRSIPRYLLPEHV 184

Query: 748 GSCHLRISYSAHTDLNIKFQSHRS 819
           GSCHLRISYSAHTDLNIKFQSHRS
Sbjct: 185 GSCHLRISYSAHTDLNIKFQSHRS 208



 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 51/99 (51%), Positives = 63/99 (63%)
 Frame = +1

Query: 523 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNA 702
           NVLL +IE ++   V+IDV+H VFSAFG V KIA FEK  G QALIQ+ D  TA+ A+  
Sbjct: 243 NVLLASIENMQYA-VTIDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVATAAVAKET 301

Query: 703 LDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRS 819
           L+G  I         G C L +SYS HTDLN+K  S +S
Sbjct: 302 LEGHCI------YDGGYCKLHLSYSRHTDLNVKAYSDKS 334


>gb|ABB55397.1| polypyrimidine tract-binding protein-like [Solanum tuberosum]
          Length = 442

 Score =  375 bits (963), Expect = e-102
 Identities = 186/204 (91%), Positives = 192/204 (94%)
 Frame = +1

Query: 208 GQTQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFVDL 387
           GQ QFRYTQTPSKVLHLRNLPW+C++EELVELCKPFGKIVNTKCNVGANRNQAFVEF DL
Sbjct: 5   GQQQFRYTQTPSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEFADL 64

Query: 388 NQAIQMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSGGDVAGNVLLVTIEGVEAGDV 567
           NQAI MVSYYASSSEPAQVRGKTVYIQYSNR EIVNNKS GDV GNVLLVTIEGVEAGDV
Sbjct: 65  NQAINMVSYYASSSEPAQVRGKTVYIQYSNRNEIVNNKSPGDVPGNVLLVTIEGVEAGDV 124

Query: 568 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV 747
           SIDVIHLVFSAFGFV KIATFEKAAGFQALIQF+D  TAS+AR ALDGRSIP+YLLPEHV
Sbjct: 125 SIDVIHLVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAAREALDGRSIPKYLLPEHV 184

Query: 748 GSCHLRISYSAHTDLNIKFQSHRS 819
             CHLRISYSAHTDLNIKFQSHRS
Sbjct: 185 NHCHLRISYSAHTDLNIKFQSHRS 208



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 45/99 (45%), Positives = 63/99 (63%)
 Frame = +1

Query: 523 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNA 702
           NVL  ++E ++   V++DV++ VFSAFG V KIA FEK    QALIQ+ D   A++A++A
Sbjct: 243 NVLFASLENMQYA-VTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTIAAAAKDA 301

Query: 703 LDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRS 819
           L+G  I         G C L +SYS HTDLN++  S +S
Sbjct: 302 LEGHCI------YDGGYCKLHLSYSRHTDLNVQAYSDKS 334


>gb|ABB02630.1| polypyrimidine tract-binding-like [Solanum tuberosum]
          Length = 437

 Score =  375 bits (963), Expect = e-102
 Identities = 186/204 (91%), Positives = 192/204 (94%)
 Frame = +1

Query: 208 GQTQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFVDL 387
           GQ QFRYTQTPSKVLHLRNLPW+C++EELVELCKPFGKIVNTKCNVGANRNQAFVEF DL
Sbjct: 5   GQQQFRYTQTPSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEFADL 64

Query: 388 NQAIQMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSGGDVAGNVLLVTIEGVEAGDV 567
           NQAI MVSYYASSSEPAQVRGKTVYIQYSNR EIVNNKS GDV GNVLLVTIEGVEAGDV
Sbjct: 65  NQAINMVSYYASSSEPAQVRGKTVYIQYSNRNEIVNNKSPGDVPGNVLLVTIEGVEAGDV 124

Query: 568 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV 747
           SIDVIHLVFSAFGFV KIATFEKAAGFQALIQF+D  TAS+AR ALDGRSIP+YLLPEHV
Sbjct: 125 SIDVIHLVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAAREALDGRSIPKYLLPEHV 184

Query: 748 GSCHLRISYSAHTDLNIKFQSHRS 819
             CHLRISYSAHTDLNIKFQSHRS
Sbjct: 185 NHCHLRISYSAHTDLNIKFQSHRS 208



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 45/99 (45%), Positives = 63/99 (63%)
 Frame = +1

Query: 523 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNA 702
           NVL  ++E ++   V++DV++ VFSAFG V KIA FEK    QALIQ+ D   A++A++A
Sbjct: 243 NVLFASLENMQYA-VTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTIAAAAKDA 301

Query: 703 LDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRS 819
           L+G  I         G C L +SYS HTDLN++  S +S
Sbjct: 302 LEGHCI------YDGGYCKLHLSYSRHTDLNVQAYSDKS 334


>gb|AEG89705.1| polypyrimidine tract-binding protein 7 [Solanum tuberosum]
          Length = 467

 Score =  375 bits (963), Expect = e-102
 Identities = 186/204 (91%), Positives = 192/204 (94%)
 Frame = +1

Query: 208 GQTQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFVDL 387
           GQ QFRYTQTPSKVLHLRNLPW+C++EELVELCKPFGKIVNTKCNVGANRNQAFVEF DL
Sbjct: 5   GQQQFRYTQTPSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEFADL 64

Query: 388 NQAIQMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSGGDVAGNVLLVTIEGVEAGDV 567
           NQAI MVSYYASSSEPAQVRGKTVYIQYSNR EIVNNKS GDV GNVLLVTIEGVEAGDV
Sbjct: 65  NQAINMVSYYASSSEPAQVRGKTVYIQYSNRNEIVNNKSPGDVPGNVLLVTIEGVEAGDV 124

Query: 568 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV 747
           SIDVIHLVFSAFGFV KIATFEKAAGFQALIQF+D  TAS+AR ALDGRSIP+YLLPEHV
Sbjct: 125 SIDVIHLVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAAREALDGRSIPKYLLPEHV 184

Query: 748 GSCHLRISYSAHTDLNIKFQSHRS 819
             CHLRISYSAHTDLNIKFQSHRS
Sbjct: 185 NHCHLRISYSAHTDLNIKFQSHRS 208



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 45/99 (45%), Positives = 63/99 (63%)
 Frame = +1

Query: 523 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNA 702
           NVL  ++E ++   V++DV++ VFSAFG V KIA FEK    QALIQ+ D   A++A++A
Sbjct: 243 NVLFASLENMQYA-VTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTIAAAAKDA 301

Query: 703 LDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRS 819
           L+G  I         G C L +SYS HTDLN++  S +S
Sbjct: 302 LEGHCI------YDGGYCKLHLSYSRHTDLNVQAYSDKS 334


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