BLASTX nr result
ID: Coptis21_contig00003833
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00003833
(821 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding prot... 397 e-108
gb|ABK95931.1| unknown [Populus trichocarpa] 389 e-106
gb|ABB55397.1| polypyrimidine tract-binding protein-like [Solanu... 375 e-102
gb|ABB02630.1| polypyrimidine tract-binding-like [Solanum tubero... 375 e-102
gb|AEG89705.1| polypyrimidine tract-binding protein 7 [Solanum t... 375 e-102
>ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform 1
[Vitis vinifera] gi|296082938|emb|CBI22239.3| unnamed
protein product [Vitis vinifera]
Length = 449
Score = 397 bits (1020), Expect = e-108
Identities = 198/204 (97%), Positives = 199/204 (97%)
Frame = +1
Query: 208 GQTQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFVDL 387
GQ QFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEF+DL
Sbjct: 5 GQPQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFLDL 64
Query: 388 NQAIQMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSGGDVAGNVLLVTIEGVEAGDV 567
NQAI MVSYYASSSEPAQVRGKTVYIQYSNR EIVNNKS GDV GNVLLVTIEGVEAGDV
Sbjct: 65 NQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDV 124
Query: 568 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV 747
SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV
Sbjct: 125 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV 184
Query: 748 GSCHLRISYSAHTDLNIKFQSHRS 819
GSCHLRISYSAHTDLNIKFQSHRS
Sbjct: 185 GSCHLRISYSAHTDLNIKFQSHRS 208
Score = 91.7 bits (226), Expect = 2e-16
Identities = 52/99 (52%), Positives = 64/99 (64%)
Frame = +1
Query: 523 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNA 702
NVLL +IE ++ V++DV+H VFSAFG V KIA FEK G QALIQ+ D TA+ A+ A
Sbjct: 243 NVLLASIENMQYA-VTVDVLHTVFSAFGTVQKIAIFEKNGGMQALIQYPDVTTAAVAKEA 301
Query: 703 LDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRS 819
L+G I G C L +SYS HTDLN+K S RS
Sbjct: 302 LEGHCI------YDGGYCKLHLSYSRHTDLNVKAHSDRS 334
>gb|ABK95931.1| unknown [Populus trichocarpa]
Length = 473
Score = 389 bits (999), Expect = e-106
Identities = 192/204 (94%), Positives = 198/204 (97%)
Frame = +1
Query: 208 GQTQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFVDL 387
GQ QFRYTQTPSKVLHLRNLPWECTEEEL+ELCKPFG+IVNTKCNVGANRNQAFVEFVD
Sbjct: 5 GQPQFRYTQTPSKVLHLRNLPWECTEEELIELCKPFGRIVNTKCNVGANRNQAFVEFVDQ 64
Query: 388 NQAIQMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSGGDVAGNVLLVTIEGVEAGDV 567
NQAIQMVSYYASSS+PAQVRGKTVYIQYSNR EIVNNKS GD GNVLLVTIEGVEAGDV
Sbjct: 65 NQAIQMVSYYASSSDPAQVRGKTVYIQYSNRHEIVNNKSPGDNPGNVLLVTIEGVEAGDV 124
Query: 568 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV 747
SIDVIHLVFSAFG++HKIATFEKAAGFQALIQFTD+ETASSARNALDGRSIPRYLLPEHV
Sbjct: 125 SIDVIHLVFSAFGYLHKIATFEKAAGFQALIQFTDSETASSARNALDGRSIPRYLLPEHV 184
Query: 748 GSCHLRISYSAHTDLNIKFQSHRS 819
GSCHLRISYSAHTDLNIKFQSHRS
Sbjct: 185 GSCHLRISYSAHTDLNIKFQSHRS 208
Score = 88.2 bits (217), Expect = 2e-15
Identities = 51/99 (51%), Positives = 63/99 (63%)
Frame = +1
Query: 523 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNA 702
NVLL +IE ++ V+IDV+H VFSAFG V KIA FEK G QALIQ+ D TA+ A+
Sbjct: 243 NVLLASIENMQYA-VTIDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVATAAVAKET 301
Query: 703 LDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRS 819
L+G I G C L +SYS HTDLN+K S +S
Sbjct: 302 LEGHCI------YDGGYCKLHLSYSRHTDLNVKAYSDKS 334
>gb|ABB55397.1| polypyrimidine tract-binding protein-like [Solanum tuberosum]
Length = 442
Score = 375 bits (963), Expect = e-102
Identities = 186/204 (91%), Positives = 192/204 (94%)
Frame = +1
Query: 208 GQTQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFVDL 387
GQ QFRYTQTPSKVLHLRNLPW+C++EELVELCKPFGKIVNTKCNVGANRNQAFVEF DL
Sbjct: 5 GQQQFRYTQTPSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEFADL 64
Query: 388 NQAIQMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSGGDVAGNVLLVTIEGVEAGDV 567
NQAI MVSYYASSSEPAQVRGKTVYIQYSNR EIVNNKS GDV GNVLLVTIEGVEAGDV
Sbjct: 65 NQAINMVSYYASSSEPAQVRGKTVYIQYSNRNEIVNNKSPGDVPGNVLLVTIEGVEAGDV 124
Query: 568 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV 747
SIDVIHLVFSAFGFV KIATFEKAAGFQALIQF+D TAS+AR ALDGRSIP+YLLPEHV
Sbjct: 125 SIDVIHLVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAAREALDGRSIPKYLLPEHV 184
Query: 748 GSCHLRISYSAHTDLNIKFQSHRS 819
CHLRISYSAHTDLNIKFQSHRS
Sbjct: 185 NHCHLRISYSAHTDLNIKFQSHRS 208
Score = 79.0 bits (193), Expect = 1e-12
Identities = 45/99 (45%), Positives = 63/99 (63%)
Frame = +1
Query: 523 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNA 702
NVL ++E ++ V++DV++ VFSAFG V KIA FEK QALIQ+ D A++A++A
Sbjct: 243 NVLFASLENMQYA-VTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTIAAAAKDA 301
Query: 703 LDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRS 819
L+G I G C L +SYS HTDLN++ S +S
Sbjct: 302 LEGHCI------YDGGYCKLHLSYSRHTDLNVQAYSDKS 334
>gb|ABB02630.1| polypyrimidine tract-binding-like [Solanum tuberosum]
Length = 437
Score = 375 bits (963), Expect = e-102
Identities = 186/204 (91%), Positives = 192/204 (94%)
Frame = +1
Query: 208 GQTQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFVDL 387
GQ QFRYTQTPSKVLHLRNLPW+C++EELVELCKPFGKIVNTKCNVGANRNQAFVEF DL
Sbjct: 5 GQQQFRYTQTPSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEFADL 64
Query: 388 NQAIQMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSGGDVAGNVLLVTIEGVEAGDV 567
NQAI MVSYYASSSEPAQVRGKTVYIQYSNR EIVNNKS GDV GNVLLVTIEGVEAGDV
Sbjct: 65 NQAINMVSYYASSSEPAQVRGKTVYIQYSNRNEIVNNKSPGDVPGNVLLVTIEGVEAGDV 124
Query: 568 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV 747
SIDVIHLVFSAFGFV KIATFEKAAGFQALIQF+D TAS+AR ALDGRSIP+YLLPEHV
Sbjct: 125 SIDVIHLVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAAREALDGRSIPKYLLPEHV 184
Query: 748 GSCHLRISYSAHTDLNIKFQSHRS 819
CHLRISYSAHTDLNIKFQSHRS
Sbjct: 185 NHCHLRISYSAHTDLNIKFQSHRS 208
Score = 79.0 bits (193), Expect = 1e-12
Identities = 45/99 (45%), Positives = 63/99 (63%)
Frame = +1
Query: 523 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNA 702
NVL ++E ++ V++DV++ VFSAFG V KIA FEK QALIQ+ D A++A++A
Sbjct: 243 NVLFASLENMQYA-VTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTIAAAAKDA 301
Query: 703 LDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRS 819
L+G I G C L +SYS HTDLN++ S +S
Sbjct: 302 LEGHCI------YDGGYCKLHLSYSRHTDLNVQAYSDKS 334
>gb|AEG89705.1| polypyrimidine tract-binding protein 7 [Solanum tuberosum]
Length = 467
Score = 375 bits (963), Expect = e-102
Identities = 186/204 (91%), Positives = 192/204 (94%)
Frame = +1
Query: 208 GQTQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFVDL 387
GQ QFRYTQTPSKVLHLRNLPW+C++EELVELCKPFGKIVNTKCNVGANRNQAFVEF DL
Sbjct: 5 GQQQFRYTQTPSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEFADL 64
Query: 388 NQAIQMVSYYASSSEPAQVRGKTVYIQYSNRQEIVNNKSGGDVAGNVLLVTIEGVEAGDV 567
NQAI MVSYYASSSEPAQVRGKTVYIQYSNR EIVNNKS GDV GNVLLVTIEGVEAGDV
Sbjct: 65 NQAINMVSYYASSSEPAQVRGKTVYIQYSNRNEIVNNKSPGDVPGNVLLVTIEGVEAGDV 124
Query: 568 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHV 747
SIDVIHLVFSAFGFV KIATFEKAAGFQALIQF+D TAS+AR ALDGRSIP+YLLPEHV
Sbjct: 125 SIDVIHLVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAAREALDGRSIPKYLLPEHV 184
Query: 748 GSCHLRISYSAHTDLNIKFQSHRS 819
CHLRISYSAHTDLNIKFQSHRS
Sbjct: 185 NHCHLRISYSAHTDLNIKFQSHRS 208
Score = 79.0 bits (193), Expect = 1e-12
Identities = 45/99 (45%), Positives = 63/99 (63%)
Frame = +1
Query: 523 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNA 702
NVL ++E ++ V++DV++ VFSAFG V KIA FEK QALIQ+ D A++A++A
Sbjct: 243 NVLFASLENMQYA-VTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTIAAAAKDA 301
Query: 703 LDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRS 819
L+G I G C L +SYS HTDLN++ S +S
Sbjct: 302 LEGHCI------YDGGYCKLHLSYSRHTDLNVQAYSDKS 334