BLASTX nr result
ID: Coptis21_contig00003802
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00003802 (900 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002274515.2| PREDICTED: zinc finger CCCH domain-containin... 107 5e-21 emb|CBI38961.3| unnamed protein product [Vitis vinifera] 107 5e-21 ref|XP_002437553.1| hypothetical protein SORBIDRAFT_10g029250 [S... 84 3e-14 gb|AET06166.1| CCCH-type zinc finger protein LIC [Zea mays] 84 4e-14 ref|NP_001147895.1| nucleic acid binding protein [Zea mays] gi|1... 84 4e-14 >ref|XP_002274515.2| PREDICTED: zinc finger CCCH domain-containing protein 16-like [Vitis vinifera] Length = 383 Score = 107 bits (266), Expect = 5e-21 Identities = 57/122 (46%), Positives = 73/122 (59%) Frame = +1 Query: 154 ERERNMLNSKVMQFENLQRNPYVISPNTTIGGAIPFPATNNSAFPAPVQKNAPPSVSSFS 333 ERER++LNSK+++F++L R PY PN+T+ AI PA N A Q N PPS SSFS Sbjct: 170 ERERSLLNSKLIEFDSLLRKPYAAPPNSTL--AIQSPAPNPDASSLTAQNNTPPSASSFS 227 Query: 334 QLGIPTNQGSNTSVVASTNSIFGQKSVPPVSTQPSDSFGSNNLTFGTQGLFGSQQHTQQQ 513 QL N G T +N+ FGQ + S+Q S +FG+NNL FG G FGSQ Q Sbjct: 228 QLSTSPNMGFGTRPSTPSNNAFGQSNSIQFSSQTSGAFGTNNLAFGNAGSFGSQLPVQMH 287 Query: 514 GN 519 G+ Sbjct: 288 GS 289 >emb|CBI38961.3| unnamed protein product [Vitis vinifera] Length = 394 Score = 107 bits (266), Expect = 5e-21 Identities = 57/122 (46%), Positives = 73/122 (59%) Frame = +1 Query: 154 ERERNMLNSKVMQFENLQRNPYVISPNTTIGGAIPFPATNNSAFPAPVQKNAPPSVSSFS 333 ERER++LNSK+++F++L R PY PN+T+ AI PA N A Q N PPS SSFS Sbjct: 181 ERERSLLNSKLIEFDSLLRKPYAAPPNSTL--AIQSPAPNPDASSLTAQNNTPPSASSFS 238 Query: 334 QLGIPTNQGSNTSVVASTNSIFGQKSVPPVSTQPSDSFGSNNLTFGTQGLFGSQQHTQQQ 513 QL N G T +N+ FGQ + S+Q S +FG+NNL FG G FGSQ Q Sbjct: 239 QLSTSPNMGFGTRPSTPSNNAFGQSNSIQFSSQTSGAFGTNNLAFGNAGSFGSQLPVQMH 298 Query: 514 GN 519 G+ Sbjct: 299 GS 300 >ref|XP_002437553.1| hypothetical protein SORBIDRAFT_10g029250 [Sorghum bicolor] gi|241915776|gb|EER88920.1| hypothetical protein SORBIDRAFT_10g029250 [Sorghum bicolor] Length = 412 Score = 84.3 bits (207), Expect = 3e-14 Identities = 51/133 (38%), Positives = 71/133 (53%), Gaps = 3/133 (2%) Frame = +1 Query: 154 ERERNMLNSKVMQFENLQRNPYV-ISPNTTIGGAIPFPATNNSAFPAPVQKNAPPSVSSF 330 E ERN+ N+K+ +F N NP++ +S + FP N++ Q N PP SSF Sbjct: 196 EGERNLQNAKLTEFNNFLNNPHLSVSQTPSFPTVASFPEVKNNSPFGVSQNNGPPVFSSF 255 Query: 331 SQLGIPTN--QGSNTSVVASTNSIFGQKSVPPVSTQPSDSFGSNNLTFGTQGLFGSQQHT 504 SQ+G N GS T+ TNSIFGQ + P P+ +FG +++ FG G FGSQ Sbjct: 256 SQIGAANNIGPGSRTTPGFPTNSIFGQSNQPSHPGFPTPTFGRSDMKFGVSGSFGSQ--I 313 Query: 505 QQQGNGNASTFNM 543 QQ +G+ NM Sbjct: 314 SQQSSGSLQGSNM 326 >gb|AET06166.1| CCCH-type zinc finger protein LIC [Zea mays] Length = 401 Score = 84.0 bits (206), Expect = 4e-14 Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 7/135 (5%) Frame = +1 Query: 154 ERERNMLNSKVMQFENLQRNPYV-ISPNTTIGGAIPFPAT-NNSAFPAPVQKNAPPSVSS 327 E E+N+ N+K+ F N P + +S + FP NNSAF Q N PP SS Sbjct: 185 EGEKNLKNAKLTDFNNFLNTPRLSVSQTPSFPTVASFPEVKNNSAFGVS-QNNGPPVFSS 243 Query: 328 FSQLGIPTNQG--SNTSVVASTNSIFGQKSVPPVSTQPSDSFGSNNLTFGTQGLFGSQQH 501 FSQ+G+ TN G S T+ TN++FGQ + P T P+ +FG +++ FG G FGSQ Sbjct: 244 FSQIGVTTNMGPGSRTTPGVPTNTLFGQSTQPSHPTFPAPTFGRSDMKFGVSGPFGSQIS 303 Query: 502 TQQQG---NGNASTF 537 Q G N S+F Sbjct: 304 QQSSGTFQGSNMSSF 318 >ref|NP_001147895.1| nucleic acid binding protein [Zea mays] gi|195614438|gb|ACG29049.1| nucleic acid binding protein [Zea mays] gi|413934834|gb|AFW69385.1| putative zinc finger C-x8-C-x5-C-x3-H type family protein [Zea mays] Length = 401 Score = 84.0 bits (206), Expect = 4e-14 Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 7/135 (5%) Frame = +1 Query: 154 ERERNMLNSKVMQFENLQRNPYV-ISPNTTIGGAIPFPAT-NNSAFPAPVQKNAPPSVSS 327 E E+N+ N+K+ F N P + +S + FP NNSAF Q N PP SS Sbjct: 185 EGEKNLKNAKLTDFNNFLNTPRLSVSQTPSFPTVASFPEVKNNSAFGVS-QNNGPPVFSS 243 Query: 328 FSQLGIPTNQG--SNTSVVASTNSIFGQKSVPPVSTQPSDSFGSNNLTFGTQGLFGSQQH 501 FSQ+G+ TN G S T+ TN++FGQ + P T P+ +FG +++ FG G FGSQ Sbjct: 244 FSQIGVTTNMGPGSRTTPGVPTNTLFGQSTQPSHPTFPAPTFGRSDMKFGVSGPFGSQIS 303 Query: 502 TQQQG---NGNASTF 537 Q G N S+F Sbjct: 304 QQSSGTFQGSNMSSF 318