BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003792
         (2307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat...    79   1e-15
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...    82   2e-15
ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...    89   4e-15
emb|CBI36131.3| unnamed protein product [Vitis vinifera]               89   4e-15
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ...    76   1e-12

>ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score = 79.3 bits (194), Expect(2) = 1e-15
 Identities = 37/86 (43%), Positives = 50/86 (58%)
 Frame = -1

Query: 912 VFFWNTMI*AYVNNSRFIDGVELFLEMWGLGFLPNEFTYPFVFKCCYVLGLVELGRMIHG 733
           +F WN +I AY  N      + L+ +M   G  P+ FT PFV K C  L  +  GR+IH 
Sbjct: 124 LFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHE 183

Query: 732 AMIVHGYCEDVFAGSALLDVYVKCGC 655
            +I  G+  DVF G+AL+D+Y KCGC
Sbjct: 184 RVIRSGWERDVFVGAALVDMYAKCGC 209



 Score = 32.3 bits (72), Expect(2) = 1e-15
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 1094 EECAETFSFQMGAQIHARLIQLGIYTDVFLSTK 996
            E C    + + G Q+HARL QLGI  ++ L+TK
Sbjct: 66   ESCISAKALEPGKQLHARLCQLGIAYNLDLATK 98


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score = 82.0 bits (201), Expect(2) = 2e-15
 Identities = 37/86 (43%), Positives = 52/86 (60%)
 Frame = -1

Query: 912 VFFWNTMI*AYVNNSRFIDGVELFLEMWGLGFLPNEFTYPFVFKCCYVLGLVELGRMIHG 733
           +F WN MI  Y  N  +   + L+ +M   G +P++FT+PFV K C  L  +E G+ IH 
Sbjct: 67  LFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHK 126

Query: 732 AMIVHGYCEDVFAGSALLDVYVKCGC 655
            +I  G   DVF G+AL+D+Y KCGC
Sbjct: 127 DVIRSGLESDVFVGAALIDMYAKCGC 152



 Score = 28.5 bits (62), Expect(2) = 2e-15
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 1094 EECAETFSFQMGAQIHARLIQLGIYTDVFLSTK 996
            + C    + + G Q+HAR+ Q+GI  +  L+TK
Sbjct: 9    QSCVVRKAIEPGKQLHARICQVGISFNPLLATK 41


>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score = 89.4 bits (220), Expect = 4e-15
 Identities = 38/88 (43%), Positives = 56/88 (63%)
 Frame = -1

Query: 912 VFFWNTMI*AYVNNSRFIDGVELFLEMWGLGFLPNEFTYPFVFKCCYVLGLVELGRMIHG 733
           +F WN +I  Y  N  +   V+L+ +M+  G +P+ FT+PFV K C  L  +E GR IH 
Sbjct: 141 IFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHE 200

Query: 732 AMIVHGYCEDVFAGSALLDVYVKCGCFG 649
            ++  G+ +DVF G+AL+D+Y KCGC G
Sbjct: 201 HVVQTGWEKDVFVGAALIDMYAKCGCVG 228


>emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score = 89.4 bits (220), Expect = 4e-15
 Identities = 38/88 (43%), Positives = 56/88 (63%)
 Frame = -1

Query: 912 VFFWNTMI*AYVNNSRFIDGVELFLEMWGLGFLPNEFTYPFVFKCCYVLGLVELGRMIHG 733
           +F WN +I  Y  N  +   V+L+ +M+  G +P+ FT+PFV K C  L  +E GR IH 
Sbjct: 141 IFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHE 200

Query: 732 AMIVHGYCEDVFAGSALLDVYVKCGCFG 649
            ++  G+ +DVF G+AL+D+Y KCGC G
Sbjct: 201 HVVQTGWEKDVFVGAALIDMYAKCGCVG 228


>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355486783|gb|AES67986.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score = 75.9 bits (185), Expect(2) = 1e-12
 Identities = 35/86 (40%), Positives = 49/86 (56%)
 Frame = -1

Query: 912 VFFWNTMI*AYVNNSRFIDGVELFLEMWGLGFLPNEFTYPFVFKCCYVLGLVELGRMIHG 733
           +F WN +I  Y  N    + + L+ +M   G  P+ FT PFV K C  L  +  GR IH 
Sbjct: 113 LFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHE 172

Query: 732 AMIVHGYCEDVFAGSALLDVYVKCGC 655
            +I  G+  D+F G+AL+D+Y KCGC
Sbjct: 173 YVIKSGWERDLFVGAALIDMYAKCGC 198



 Score = 25.4 bits (54), Expect(2) = 1e-12
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 1094 EECAETFSFQMGAQIHARLIQLGIYTDVFLSTK 996
            + C ++ +   G Q+HA+   LGI  +  L+TK
Sbjct: 55   QSCIDSKALNPGKQLHAQFYHLGIAYNQDLATK 87