BLASTX nr result

ID: Coptis21_contig00003643 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003643
         (2982 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266...   699   0.0  
emb|CBI34075.3| unnamed protein product [Vitis vinifera]              694   0.0  
ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232...   548   e-153
ref|XP_002526479.1| RNA binding protein, putative [Ricinus commu...   527   e-147
gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]      522   e-145

>ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266805 [Vitis vinifera]
          Length = 719

 Score =  699 bits (1804), Expect = 0.0
 Identities = 354/607 (58%), Positives = 438/607 (72%), Gaps = 6/607 (0%)
 Frame = +2

Query: 281  MKERRKRKEFEIFVGGLDRDANEEDMRKVFSQVGEVTEVRLMKNPMTQKNKGFGFVRFAT 460
            +KERRKRKEFE+FVGGLDRD  E+D+   F QVG++TEVRLMKN +TQKNKGF F+RFAT
Sbjct: 116  VKERRKRKEFEVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFAT 175

Query: 461  VEQARRAINELKHPTVNGKQCGVSPSQDSDTLFVGNICKTWTKAIFREKLVHHGVDKFEE 640
            VEQARRA+NELKHP +NGKQCGV+PSQDSDTLFVGNICKTWTK   ++KL ++GVDK+E+
Sbjct: 176  VEQARRAVNELKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYED 235

Query: 641  VTLVEDAKNEGLNRGFAFLDFSCRADALEACKRLQKMDVVFGTDRSAKVAFADTFIEPDD 820
            +TLVED KNEG+NRGFAFLDFS RADALEACKRLQK DVVFGTDR+A+VAFADTFIEPDD
Sbjct: 236  LTLVEDTKNEGMNRGFAFLDFSSRADALEACKRLQKRDVVFGTDRTARVAFADTFIEPDD 295

Query: 821  EIMAQVRTVFLDGLPASWDEDRASEHVKKFGKVEKVELARNMPAAKRTDFGFITFDTHDA 1000
            EIM+QVRT+FLDGLPA+WDEDR  +++KKFG++EK+ELARNMPAAKRTDFGF+TFDTHD+
Sbjct: 296  EIMSQVRTIFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAKRTDFGFVTFDTHDS 355

Query: 1001 AVACVDGVNNTELGDGVKKVKVRARLSRPRQRGKSSRHAXXXXXXXXXXXXXXXTSWDSS 1180
            AVACVD +NN+EL DG + VKVRARLSRPRQRGKS++HA                 W SS
Sbjct: 356  AVACVDSINNSELVDGERLVKVRARLSRPRQRGKSAKHARGGYLVAQGSGRGFKAPWGSS 415

Query: 1181 ----DSWGYAGRSGRDMQSHRTYSGGFKRPLGSRERYPITEMASSRIDSRRRLPSSERSY 1348
                DSW + GR GR MQ+   Y GG KRP+G R+R+ + EM  +R+ SRRR PS E S+
Sbjct: 416  SSRMDSWKFTGRGGRSMQTRGAYDGGLKRPVGPRDRHSMMEMVPTRVGSRRRFPSPESSF 475

Query: 1349 DRRSPGLAFGRSSSRREYVRTDEHYPRSSDFVDGVRPSNYVSKTRSSDFVDGVRSSNYVS 1528
             RRSP   + +SS++REY++ DE + R + F                             
Sbjct: 476  GRRSP--VYEKSSTKREYIQRDESFSRPAVF----------------------------- 504

Query: 1529 KTRSSDFVTKGASEKRWSYRDAYPSRESEYLDSPQXXXXXXXXXXXXXXXXEESYGRHME 1708
                     +  +E+R+ Y+D Y SR SEYLDSP                 ++ Y R++E
Sbjct: 505  --------ARDPTERRY-YKDNYSSRGSEYLDSP-PRNVSRAAGHRAPLYEDDDYDRYLE 554

Query: 1709 RPSSYRGSQSHDYGSVSGSKRPHASMEEYQSRFPESTVRQSRARFDYGVSNDDMPYNDRA 1888
            RP++Y     HDYGS+S SKR H++MEE  SR+ E  +R SRARFDYG SN  +PY+D  
Sbjct: 555  RPTNYHDGHRHDYGSISSSKRSHSAMEEVHSRYAEPPIRHSRARFDYGGSNSGLPYDDH- 613

Query: 1889 YGSESTS-ARVGRGTHLGYERGSRSSAGHSQGVYDTHTS-SAYSRDEGRRADMGGAYSSY 2062
            YGSESTS  R+GRG+ LGY+ G RSS+GHS+G+Y+T TS + Y RD+  R +  G YSSY
Sbjct: 614  YGSESTSERRMGRGSRLGYDGGMRSSSGHSRGMYETRTSTTGYRRDDISRGNEEGMYSSY 673

Query: 2063 ERDYPSR 2083
            +R+Y SR
Sbjct: 674  DREYMSR 680


>emb|CBI34075.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  694 bits (1790), Expect = 0.0
 Identities = 353/610 (57%), Positives = 437/610 (71%), Gaps = 9/610 (1%)
 Frame = +2

Query: 281  MKERRKRKEFEIFVGGLDRDANEEDMRKVFSQVGEVTEVRLMKNPMTQKNKGFGFVRFAT 460
            +KERRKRKEFE+FVGGLDRD  E+D+   F QVG++TEVRLMKN +TQKNKGF F+RFAT
Sbjct: 177  VKERRKRKEFEVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFAT 236

Query: 461  VEQARRAINELKHPTVNGKQCGVSPSQDSDTLFVGNICKTWTKAIFREKLVHHGVDKFEE 640
            VEQARRA+NELKHP +NGKQCGV+PSQDSDTLFVGNICKTWTK   ++KL ++GVDK+E+
Sbjct: 237  VEQARRAVNELKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYED 296

Query: 641  VTLVEDAKNEGLNRGFAFLDFSCRADALEACKRLQKMDVVFGTDRSAKVAFADTFIEPDD 820
            +TLVED KNEG+NRGFAFLDFS RADALEACKRLQK DVVFGTDR+A+VAFADTFIEPDD
Sbjct: 297  LTLVEDTKNEGMNRGFAFLDFSSRADALEACKRLQKRDVVFGTDRTARVAFADTFIEPDD 356

Query: 821  EIMAQVRTVFLDGLPASWDEDRASEHVKKFGKVEKVELARNMPAAKRTDFGFITFDTHDA 1000
            EIM+QVRT+FLDGLPA+WDEDR  +++KKFG++EK+ELARNMPAAKRTDFGF+TFDTHD+
Sbjct: 357  EIMSQVRTIFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAKRTDFGFVTFDTHDS 416

Query: 1001 AVACVDGVNNTELGDGVKKVKVRARLSRPRQRGKSSRHAXXXXXXXXXXXXXXXTSWDSS 1180
            AVACVD +NN+EL DG + VKVRARLSRPRQRGKS++HA                 W SS
Sbjct: 417  AVACVDSINNSELVDGERLVKVRARLSRPRQRGKSAKHARGGYLVAQGSGRGFKAPWGSS 476

Query: 1181 ----DSWGYAGRSGRDMQSHRTYSGGFKRPLGSRERYPITEMASSRIDSRRRLPSSERSY 1348
                DSW + GR GR MQ+   Y GG KRP+G R+R+ + EM  +R+ SRRR PS E S+
Sbjct: 477  SSRMDSWKFTGRGGRSMQTRGAYDGGLKRPVGPRDRHSMMEMVPTRVGSRRRFPSPESSF 536

Query: 1349 DRRSPGLAFGRSSSRREYVRTDEHYPRSSDFVDGVRPSNYVSKTRSSDFVDGVRSSNYVS 1528
             RRSP   + +SS++REY++ DE + R + F                             
Sbjct: 537  GRRSP--VYEKSSTKREYIQRDESFSRPAVF----------------------------- 565

Query: 1529 KTRSSDFVTKGASEKRWSYRDAYPSRESEYLDSPQXXXXXXXXXXXXXXXXEESYGRHME 1708
                     +  +E+R+ Y+D Y SR SEYLDSP                 ++ Y R++E
Sbjct: 566  --------ARDPTERRY-YKDNYSSRGSEYLDSP-PRNVSRAAGHRAPLYEDDDYDRYLE 615

Query: 1709 RPSSYRGSQSHDYGSVSGSKRPHASMEEYQSRFPESTVRQSRARFDYGVSNDDMPYNDRA 1888
            RP++Y     HDYGS+S SKR H++MEE  SR+ E  +R SRARFDYG SN  +PY+D  
Sbjct: 616  RPTNYHDGHRHDYGSISSSKRSHSAMEEVHSRYAEPPIRHSRARFDYGGSNSGLPYDDH- 674

Query: 1889 YGSESTS-ARVGRGTHLGYERGSRSSAGHSQGVYDTHTSSAYSR----DEGRRADMGGAY 2053
            YGSESTS  R+GRG+ LGY+ G RSS+GHS+G+Y+T TS+   R    D+  R +  G Y
Sbjct: 675  YGSESTSERRMGRGSRLGYDGGMRSSSGHSRGMYETRTSTTGYRRVLADDISRGNEEGMY 734

Query: 2054 SSYERDYPSR 2083
            SSY+R+Y SR
Sbjct: 735  SSYDREYMSR 744


>ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
            gi|297734640|emb|CBI16691.3| unnamed protein product
            [Vitis vinifera]
          Length = 812

 Score =  548 bits (1411), Expect = e-153
 Identities = 309/606 (50%), Positives = 391/606 (64%), Gaps = 6/606 (0%)
 Frame = +2

Query: 284  KERRKRKEFEIFVGGLDRDANEEDMRKVFSQVGEVTEVRLMKNPMTQKNKGFGFVRFATV 463
            KERRKRKEFE+FVGGLD+DA E+D+RKVFSQVGEVTEVRLM NP T+KNKGF F+RFATV
Sbjct: 224  KERRKRKEFEVFVGGLDKDATEDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 283

Query: 464  EQARRAINELKHPTVNGKQCGVSPSQDSDTLFVGNICKTWTKAIFREKLVHHGVDKFEEV 643
            EQA+RA+ ELK+P VNGKQCGV+PSQDSDTLF+GNICKTWTK   +EKL H+GV+  E++
Sbjct: 284  EQAKRAVTELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDL 343

Query: 644  TLVEDAKNEGLNRGFAFLDFSCRADALEACKRLQKMDVVFGTDRSAKVAFADTFIEPDDE 823
            TLVED+ NEG+NRGFAFL+FS R+DA++A KRLQK DVVFG DR+AKV+FAD+FI+P DE
Sbjct: 344  TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRTAKVSFADSFIDPGDE 403

Query: 824  IMAQVRTVFLDGLPASWDEDRASEHVKKFGKVEKVELARNMPAAKRTDFGFITFDTHDAA 1003
            IMAQV+TVF+DGLPASWDEDR  E +KK+G++EK+ELARNMP+AKR DFGF+TFDTHDAA
Sbjct: 404  IMAQVKTVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAA 463

Query: 1004 VACVDGVNNTELGDGVKKVKVRARLSRPRQRGKSSRHAXXXXXXXXXXXXXXXT-SWDSS 1180
            V C   +NN ELG+G  K KVRARLSRP QRGK    +                 SW   
Sbjct: 464  VTCAKSINNAELGEGENKAKVRARLSRPLQRGKGKHISRGDFRPGRGGPVRGVRGSWARP 523

Query: 1181 DSWGYAGRSGRDMQSHRTYSGGFKRPLGSRERYPITEMASSRIDSRRRLPSSERSYDRRS 1360
                + GR  R +   R      KRP+G R+R P+  M        R LP   RSYDRR+
Sbjct: 524  ALRSFPGRGARGL-GPRLPPAAVKRPIGFRDRRPVMAMP----PRGRPLPPPSRSYDRRA 578

Query: 1361 PGLAFGRSSSRREYVRTDEHYPRSSDFVDGVRPSNYVSKTRSSDFVDGVRSSNYVSKTRS 1540
            P  A+ + + +R+Y R +E   RS       RP                          +
Sbjct: 579  PVPAYPKPNLKRDYGRREEVPLRS-------RP--------------------------A 605

Query: 1541 SDFVTKGASEKRWSYRDAYPSRESEYLDSPQXXXXXXXXXXXXXXXXEESYGRHMER--P 1714
             D+ ++ A E+R SYRD Y +R S Y D P+                +++YG+  ER  P
Sbjct: 606  VDYGSRVAPERRPSYRDDYATRGSGYSDIPR----NTSRTAARRTYEDDAYGQRFERPPP 661

Query: 1715 SSYRGSQSHDYGSVSGSKRPHASMEEYQSRFPESTVRQSRARFDYGVSNDDMPYNDRAYG 1894
             SYR  +  DY S++GSKRP+ ++++   R+ +++VRQSRAR DY +S     Y D AYG
Sbjct: 662  PSYREGRPRDYDSIAGSKRPYGALDDVPPRYADASVRQSRARLDYEMSAGASQYGD-AYG 720

Query: 1895 SESTSARVGRGTHLGYERGSRS--SAGHSQGVYDTHTSSAYSRDEGRRADMGGAY-SSYE 2065
                  R+GR ++LGY  GSRS  S+  S G+Y +     Y       +D+GG Y SSY 
Sbjct: 721  D-----RLGR-SNLGY-GGSRSSMSSQDSHGLYSSRQGMGYGGGSFGGSDVGGMYSSSYG 773

Query: 2066 RDYPSR 2083
             DY  R
Sbjct: 774  SDYMPR 779


>ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
            gi|223534154|gb|EEF35870.1| RNA binding protein, putative
            [Ricinus communis]
          Length = 784

 Score =  527 bits (1357), Expect = e-147
 Identities = 304/613 (49%), Positives = 387/613 (63%), Gaps = 13/613 (2%)
 Frame = +2

Query: 284  KERRKRKEFEIFVGGLDRDANEEDMRKVFSQVGEVTEVRLMKNPMTQKNKGFGFVRFATV 463
            KERRKRKEFE+FVGGLD+DA E+D+RKVF++VGEVTEVRLM NP T+KNKGF F+RF+TV
Sbjct: 205  KERRKRKEFEVFVGGLDKDATEDDLRKVFTRVGEVTEVRLMMNPQTKKNKGFAFLRFSTV 264

Query: 464  EQARRAINELKHPTVNGKQCGVSPSQDSDTLFVGNICKTWTKAIFREKLVHHGVDKFEEV 643
            EQA++A+ ELK+P +NGKQCGV+PSQDSDTLF+GNICKTWTK   +EKL H+GV+  E+V
Sbjct: 265  EQAKKAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDV 324

Query: 644  TLVEDAKNEGLNRGFAFLDFSCRADALEACKRLQKMDVVFGTDRSAKVAFADTFIEPDDE 823
            TLVED+ NEG+NRGFAFL+FS R+DA++A KRLQK DV+FG DR AKV+FAD+FI+P DE
Sbjct: 325  TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDE 384

Query: 824  IMAQVRTVFLDGLPASWDEDRASEHVKKFGKVEKVELARNMPAAKRTDFGFITFDTHDAA 1003
            IMAQV+TVF+DGLPASWDEDR  E +KKFG++EK+ELARNMP+AKR DFGF+TFD+HDAA
Sbjct: 385  IMAQVKTVFVDGLPASWDEDRVRELLKKFGEIEKIELARNMPSAKRKDFGFVTFDSHDAA 444

Query: 1004 VACVDGVNNTELGDGVKKVKVRARLSRPRQRGKSSRHAXXXXXXXXXXXXXXXTSWDSSD 1183
            V C   +NN ELG+G  K KVRARLSRP QRGK  +HA                S     
Sbjct: 445  VTCAKSINNAELGEGDNKAKVRARLSRPLQRGK-GKHA----------------SRADFR 487

Query: 1184 SWGYAGRSGRDMQ-------SHRTYSGGFKRPLGSRERYPITEMASSRIDSRRRLPSSER 1342
            SW Y GR+ R          + R      KR +G R+R P       R    R LP   R
Sbjct: 488  SW-YGGRTARGPWVRPVRGIASRAAPTSVKRHVGLRDRRPPVMSMPVR---GRPLPPPNR 543

Query: 1343 SYDRRSPGLAFGRSSSRREYVRTDEHYPRSSDFVDGVRPSNYVSKTRSSDFVDGVRSSNY 1522
            +YDRR+P  ++ +SS +R+Y R +E  P  S                             
Sbjct: 544  TYDRRAPAPSYPKSSLKRDYGRREELPPPRS----------------------------- 574

Query: 1523 VSKTRSSDFVTKGASEKRWSYRDAYPSRESEYLDSPQXXXXXXXXXXXXXXXXEESYGRH 1702
                   D+ ++  +E+R SYRD Y SR S Y D P+                ++ YG+ 
Sbjct: 575  ---RAPVDYSSRSVAERRQSYRDDYSSRGSGYSDIPR----GTSRSSARRAYVDDGYGQR 627

Query: 1703 MER-PSSYRGSQSHDYGSVSGSKRPHASMEEYQSRFPE--STVRQSRARFDYGVSNDDMP 1873
            +ER P SYR  ++ DY S+SGSKRP+++M++   R+ +  +  R SRAR DY +      
Sbjct: 628  LERHPPSYREGRARDYDSISGSKRPYSAMDDVPPRYADGGAGTRHSRARLDYELGPSASQ 687

Query: 1874 YNDRAYGSESTSARVGRGTHLGYERGSRS--SAGHSQGVYDTHTSSAYSRDEGRRADMGG 2047
            Y D AYG      R+GR + +GY  GSRS  S+  S G+Y +     Y    G   D+GG
Sbjct: 688  YGD-AYGD-----RIGRSS-VGY-GGSRSSLSSQDSHGLYTSRQGMGYGGSYGAN-DVGG 738

Query: 2048 AY-SSYERDYPSR 2083
             Y SSY  DY  R
Sbjct: 739  MYQSSYGGDYMPR 751


>gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]
          Length = 775

 Score =  522 bits (1345), Expect = e-145
 Identities = 301/604 (49%), Positives = 374/604 (61%), Gaps = 4/604 (0%)
 Frame = +2

Query: 284  KERRKRKEFEIFVGGLDRDANEEDMRKVFSQVGEVTEVRLMKNPMTQKNKGFGFVRFATV 463
            +ERRKRKEFE+FVGGLD+D   +D+RKVFSQVGEVTEVRLM NP T+KNKGF F+RFATV
Sbjct: 189  QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248

Query: 464  EQARRAINELKHPTVNGKQCGVSPSQDSDTLFVGNICKTWTKAIFREKLVHHGVDKFEEV 643
            EQAR+A+ ELK+P +NGKQCGV+PSQDSDTLF+GNICKTWTK   +EKL H+GVD  E++
Sbjct: 249  EQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDL 308

Query: 644  TLVEDAKNEGLNRGFAFLDFSCRADALEACKRLQKMDVVFGTDRSAKVAFADTFIEPDDE 823
            TLVED+ NEG+NRGFAFL+FS R+DA++A KRLQK DV+FG DR AKV+FAD+FI+P DE
Sbjct: 309  TLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDE 368

Query: 824  IMAQVRTVFLDGLPASWDEDRASEHVKKFGKVEKVELARNMPAAKRTDFGFITFDTHDAA 1003
            IMAQV+TVF+DGLPASWDEDR  E +K +G++ K+ELARNMP+AKR DFGF+TFDTHDAA
Sbjct: 369  IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAA 428

Query: 1004 VACVDGVNNTELGDGVKKVKVRARLSRPRQRGKSSRHAXXXXXXXXXXXXXXXTSWDSSD 1183
            V C   +NN ELG+G  K KVRARLSRP QRGK    +                SW    
Sbjct: 429  VTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPS 488

Query: 1184 SWGYAGRSGRDMQSHRTYSGGFKRPLGSRERYPITEMASSRIDSRRRLPSSERSYDRRSP 1363
                 GRS R + S R      KRP+  R+R PI  M +    +R   P   RSYDRR+P
Sbjct: 489  PRSLPGRSARGIGS-RLPPASVKRPVPVRDRRPIMSMTAR---ARPMPPPPPRSYDRRAP 544

Query: 1364 GLAFGRSSSRREYVRTDEHYPRSSDFVDGVRPSNYVSKTRSSDFVDGVRSSNYVSKTRSS 1543
              ++ +   +REY R DE  P  S       P +Y S+                      
Sbjct: 545  VPSYPKPGLKREYGRRDEVPPPRSR-----APVDYGSR---------------------- 577

Query: 1544 DFVTKGASEKRWSYRDAYPSRESEYLDSPQXXXXXXXXXXXXXXXXEESYGRHMER-PSS 1720
                      R  YRD Y SR S Y D P+                ++ Y +  ER P S
Sbjct: 578  ------VVPDRRPYRDEYTSRGSGYPDMPR----STSRGAARRPYVDDGYAQRFERPPPS 627

Query: 1721 YRGSQSHDYGSVSGSKRPHASMEEYQSRFPESTVRQSRARFDYGVSNDDMPYNDRAYGSE 1900
            YR  ++ DY +VSGSKRP++ +++   R+ +  VR SRAR DY +      Y D AYG  
Sbjct: 628  YREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAPQYGD-AYGD- 685

Query: 1901 STSARVGRGTHLGYERGSRS--SAGHSQGVYDTHTSSAYSRDEGRRADMGGAY-SSYERD 2071
                R+GR ++LGY  GSRS  S+  S G+Y +     Y        D+GG Y SSY  D
Sbjct: 686  ----RMGR-SNLGY-GGSRSSISSQDSHGLYSSRQGMGYGGSYS-GGDVGGMYSSSYGSD 738

Query: 2072 YPSR 2083
            Y  R
Sbjct: 739  YMPR 742


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