BLASTX nr result
ID: Coptis21_contig00003639
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00003639 (899 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004146016.1| PREDICTED: 50S ribosomal protein L13, chloro... 349 6e-94 ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana... 337 2e-90 emb|CBI20115.3| unnamed protein product [Vitis vinifera] 335 1e-89 ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloro... 335 1e-89 ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] g... 334 2e-89 >ref|XP_004146016.1| PREDICTED: 50S ribosomal protein L13, chloroplastic-like [Cucumis sativus] gi|449518653|ref|XP_004166351.1| PREDICTED: 50S ribosomal protein L13, chloroplastic-like [Cucumis sativus] Length = 248 Score = 349 bits (895), Expect = 6e-94 Identities = 177/242 (73%), Positives = 195/242 (80%), Gaps = 23/242 (9%) Frame = -2 Query: 868 MALPCSSHST----LHSKLTFGSTSKTPF---------------LGFTLKPTTLSLT--- 755 MA+ C+S ST LHS LT G+TS F F L T++SLT Sbjct: 1 MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60 Query: 754 -QKPLQVRSQDLSIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDATDK 578 + LQVR+Q+L VP EQRWMF DE+ GPDIWNKTWYPKA+DH+NT+K WY+VDATDK Sbjct: 61 KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120 Query: 577 ILGRLSSTIANYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRAQKLYRRHSGRPGG 398 ILGRL+STIAN+IRGK+L TYTPSVDMGAFVIVVNAEK+AVSGKKR QKLYRRHSGRPGG Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180 Query: 397 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQTPIDLPIR 218 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ P+DLPIR Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240 Query: 217 DK 212 DK Sbjct: 241 DK 242 >ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana] gi|75314103|sp|Q9SYL9.1|RK13_ARATH RecName: Full=50S ribosomal protein L13, chloroplastic; AltName: Full=CL13; AltName: Full=Protein EMBRYO DEFECTIVE 1473; Flags: Precursor gi|4836870|gb|AAD30573.1|AC007260_4 50S Ribosomal protein L13 [Arabidopsis thaliana] gi|13878111|gb|AAK44133.1|AF370318_1 putative ribosomal protein L13 [Arabidopsis thaliana] gi|7572938|emb|CAA60775.1| ribosomal protein L13 [Arabidopsis thaliana] gi|17104781|gb|AAL34279.1| putative ribosomal protein L13 [Arabidopsis thaliana] gi|332198009|gb|AEE36130.1| 50S ribosomal protein L13 [Arabidopsis thaliana] Length = 241 Score = 337 bits (864), Expect = 2e-90 Identities = 170/235 (72%), Positives = 195/235 (82%), Gaps = 16/235 (6%) Frame = -2 Query: 868 MALPCSSHSTLHSKLTF---GSTSKTPFLGFTL----KPTT----LSLTQKPLQVRSQ-- 728 MA+ CSS + + S + GS K+PFLGF+L KP+ + +++ LQV+ + Sbjct: 1 MAVLCSSSTVILSSSSVKSSGSERKSPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAE 60 Query: 727 ---DLSIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDATDKILGRLSS 557 S+VP QRWMF ++E +GPDIWN TWYPKASDH+NTDK W++VDATDKILGRL+S Sbjct: 61 PTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLAS 120 Query: 556 TIANYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRAQKLYRRHSGRPGGMTVETFD 377 TIAN+IRGKNLA+YTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGRPGGMTVETFD Sbjct: 121 TIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFD 180 Query: 376 QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQTPIDLPIRDK 212 QLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ P+DLPIRDK Sbjct: 181 QLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLPIRDK 235 >emb|CBI20115.3| unnamed protein product [Vitis vinifera] Length = 374 Score = 335 bits (858), Expect = 1e-89 Identities = 166/210 (79%), Positives = 181/210 (86%), Gaps = 4/210 (1%) Frame = -2 Query: 829 KLTFGSTSKT-PFLGFTLKPTTL--SLTQKPLQVRSQD-LSIVPQEQRWMFADDEISGPD 662 K +FGS KT PFLGF++ S ++ +V QD ++VP +QRWMF E+SGPD Sbjct: 159 KPSFGSLKKTTPFLGFSISAANPKPSFPRQSFRVNCQDKAAVVPLDQRWMFEQSEVSGPD 218 Query: 661 IWNKTWYPKASDHINTDKKWYIVDATDKILGRLSSTIANYIRGKNLATYTPSVDMGAFVI 482 IWNKTWYPKA+DHINT+K WYIVDATDKILGRL+STIA YIRGKNLATYTPSVDMG+FVI Sbjct: 219 IWNKTWYPKAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGSFVI 278 Query: 481 VVNAEKVAVSGKKRAQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLG 302 VVNAEKVAVSGKKR QKLYRRHSGRPGGM VETFDQLQQRIPERI+EHAVRGMLPKGRLG Sbjct: 279 VVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLG 338 Query: 301 RALFNHLKVYKGPDHPHEAQTPIDLPIRDK 212 RALFNHLKVYKGP HPHEAQ PIDLPIRDK Sbjct: 339 RALFNHLKVYKGPHHPHEAQKPIDLPIRDK 368 >ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloroplastic [Vitis vinifera] Length = 235 Score = 335 bits (858), Expect = 1e-89 Identities = 166/210 (79%), Positives = 181/210 (86%), Gaps = 4/210 (1%) Frame = -2 Query: 829 KLTFGSTSKT-PFLGFTLKPTTL--SLTQKPLQVRSQD-LSIVPQEQRWMFADDEISGPD 662 K +FGS KT PFLGF++ S ++ +V QD ++VP +QRWMF E+SGPD Sbjct: 20 KPSFGSLKKTTPFLGFSISAANPKPSFPRQSFRVNCQDKAAVVPLDQRWMFEQSEVSGPD 79 Query: 661 IWNKTWYPKASDHINTDKKWYIVDATDKILGRLSSTIANYIRGKNLATYTPSVDMGAFVI 482 IWNKTWYPKA+DHINT+K WYIVDATDKILGRL+STIA YIRGKNLATYTPSVDMG+FVI Sbjct: 80 IWNKTWYPKAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGSFVI 139 Query: 481 VVNAEKVAVSGKKRAQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLG 302 VVNAEKVAVSGKKR QKLYRRHSGRPGGM VETFDQLQQRIPERI+EHAVRGMLPKGRLG Sbjct: 140 VVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLG 199 Query: 301 RALFNHLKVYKGPDHPHEAQTPIDLPIRDK 212 RALFNHLKVYKGP HPHEAQ PIDLPIRDK Sbjct: 200 RALFNHLKVYKGPHHPHEAQKPIDLPIRDK 229 >ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] gi|297333589|gb|EFH64007.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] Length = 242 Score = 334 bits (856), Expect = 2e-89 Identities = 169/236 (71%), Positives = 193/236 (81%), Gaps = 17/236 (7%) Frame = -2 Query: 868 MALPCSSHSTL---HSKLTFGSTSKTPFLGFTL----KPTT----LSLTQKPLQVRSQ-- 728 M + CSS + + S GS K+PFLGF+L KP+ + +++ LQV+ + Sbjct: 1 MTVLCSSSTVILPSSSVKPSGSERKSPFLGFSLTAFSKPSVRVGIYANSKRGLQVKCEAE 60 Query: 727 ----DLSIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDATDKILGRLS 560 S+VP QRWMF ++E +GPDIWN TWYPKASDH+NTDK W++VDATDKILGRL+ Sbjct: 61 ETTTKTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLA 120 Query: 559 STIANYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRAQKLYRRHSGRPGGMTVETF 380 STIAN+IRGKNLA+YTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGRPGGMTVETF Sbjct: 121 STIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETF 180 Query: 379 DQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQTPIDLPIRDK 212 DQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ P+DLPIRDK Sbjct: 181 DQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLPIRDK 236