BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003639
         (899 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004146016.1| PREDICTED: 50S ribosomal protein L13, chloro...   349   6e-94
ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana...   337   2e-90
emb|CBI20115.3| unnamed protein product [Vitis vinifera]              335   1e-89
ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloro...   335   1e-89
ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] g...   334   2e-89

>ref|XP_004146016.1| PREDICTED: 50S ribosomal protein L13, chloroplastic-like [Cucumis
           sativus] gi|449518653|ref|XP_004166351.1| PREDICTED: 50S
           ribosomal protein L13, chloroplastic-like [Cucumis
           sativus]
          Length = 248

 Score =  349 bits (895), Expect = 6e-94
 Identities = 177/242 (73%), Positives = 195/242 (80%), Gaps = 23/242 (9%)
 Frame = -2

Query: 868 MALPCSSHST----LHSKLTFGSTSKTPF---------------LGFTLKPTTLSLT--- 755
           MA+ C+S ST    LHS LT G+TS   F                 F L  T++SLT   
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 754 -QKPLQVRSQDLSIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDATDK 578
            +  LQVR+Q+L  VP EQRWMF  DE+ GPDIWNKTWYPKA+DH+NT+K WY+VDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 577 ILGRLSSTIANYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRAQKLYRRHSGRPGG 398
           ILGRL+STIAN+IRGK+L TYTPSVDMGAFVIVVNAEK+AVSGKKR QKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 397 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQTPIDLPIR 218
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ P+DLPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 217 DK 212
           DK
Sbjct: 241 DK 242


>ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana]
           gi|75314103|sp|Q9SYL9.1|RK13_ARATH RecName: Full=50S
           ribosomal protein L13, chloroplastic; AltName:
           Full=CL13; AltName: Full=Protein EMBRYO DEFECTIVE 1473;
           Flags: Precursor gi|4836870|gb|AAD30573.1|AC007260_4 50S
           Ribosomal protein L13 [Arabidopsis thaliana]
           gi|13878111|gb|AAK44133.1|AF370318_1 putative ribosomal
           protein L13 [Arabidopsis thaliana]
           gi|7572938|emb|CAA60775.1| ribosomal protein L13
           [Arabidopsis thaliana] gi|17104781|gb|AAL34279.1|
           putative ribosomal protein L13 [Arabidopsis thaliana]
           gi|332198009|gb|AEE36130.1| 50S ribosomal protein L13
           [Arabidopsis thaliana]
          Length = 241

 Score =  337 bits (864), Expect = 2e-90
 Identities = 170/235 (72%), Positives = 195/235 (82%), Gaps = 16/235 (6%)
 Frame = -2

Query: 868 MALPCSSHSTLHSKLTF---GSTSKTPFLGFTL----KPTT----LSLTQKPLQVRSQ-- 728
           MA+ CSS + + S  +    GS  K+PFLGF+L    KP+      + +++ LQV+ +  
Sbjct: 1   MAVLCSSSTVILSSSSVKSSGSERKSPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAE 60

Query: 727 ---DLSIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDATDKILGRLSS 557
                S+VP  QRWMF ++E +GPDIWN TWYPKASDH+NTDK W++VDATDKILGRL+S
Sbjct: 61  PTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLAS 120

Query: 556 TIANYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRAQKLYRRHSGRPGGMTVETFD 377
           TIAN+IRGKNLA+YTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGRPGGMTVETFD
Sbjct: 121 TIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFD 180

Query: 376 QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQTPIDLPIRDK 212
           QLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ P+DLPIRDK
Sbjct: 181 QLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLPIRDK 235


>emb|CBI20115.3| unnamed protein product [Vitis vinifera]
          Length = 374

 Score =  335 bits (858), Expect = 1e-89
 Identities = 166/210 (79%), Positives = 181/210 (86%), Gaps = 4/210 (1%)
 Frame = -2

Query: 829 KLTFGSTSKT-PFLGFTLKPTTL--SLTQKPLQVRSQD-LSIVPQEQRWMFADDEISGPD 662
           K +FGS  KT PFLGF++       S  ++  +V  QD  ++VP +QRWMF   E+SGPD
Sbjct: 159 KPSFGSLKKTTPFLGFSISAANPKPSFPRQSFRVNCQDKAAVVPLDQRWMFEQSEVSGPD 218

Query: 661 IWNKTWYPKASDHINTDKKWYIVDATDKILGRLSSTIANYIRGKNLATYTPSVDMGAFVI 482
           IWNKTWYPKA+DHINT+K WYIVDATDKILGRL+STIA YIRGKNLATYTPSVDMG+FVI
Sbjct: 219 IWNKTWYPKAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGSFVI 278

Query: 481 VVNAEKVAVSGKKRAQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLG 302
           VVNAEKVAVSGKKR QKLYRRHSGRPGGM VETFDQLQQRIPERI+EHAVRGMLPKGRLG
Sbjct: 279 VVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLG 338

Query: 301 RALFNHLKVYKGPDHPHEAQTPIDLPIRDK 212
           RALFNHLKVYKGP HPHEAQ PIDLPIRDK
Sbjct: 339 RALFNHLKVYKGPHHPHEAQKPIDLPIRDK 368


>ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloroplastic [Vitis
           vinifera]
          Length = 235

 Score =  335 bits (858), Expect = 1e-89
 Identities = 166/210 (79%), Positives = 181/210 (86%), Gaps = 4/210 (1%)
 Frame = -2

Query: 829 KLTFGSTSKT-PFLGFTLKPTTL--SLTQKPLQVRSQD-LSIVPQEQRWMFADDEISGPD 662
           K +FGS  KT PFLGF++       S  ++  +V  QD  ++VP +QRWMF   E+SGPD
Sbjct: 20  KPSFGSLKKTTPFLGFSISAANPKPSFPRQSFRVNCQDKAAVVPLDQRWMFEQSEVSGPD 79

Query: 661 IWNKTWYPKASDHINTDKKWYIVDATDKILGRLSSTIANYIRGKNLATYTPSVDMGAFVI 482
           IWNKTWYPKA+DHINT+K WYIVDATDKILGRL+STIA YIRGKNLATYTPSVDMG+FVI
Sbjct: 80  IWNKTWYPKAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGSFVI 139

Query: 481 VVNAEKVAVSGKKRAQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLG 302
           VVNAEKVAVSGKKR QKLYRRHSGRPGGM VETFDQLQQRIPERI+EHAVRGMLPKGRLG
Sbjct: 140 VVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLG 199

Query: 301 RALFNHLKVYKGPDHPHEAQTPIDLPIRDK 212
           RALFNHLKVYKGP HPHEAQ PIDLPIRDK
Sbjct: 200 RALFNHLKVYKGPHHPHEAQKPIDLPIRDK 229


>ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata]
           gi|297333589|gb|EFH64007.1| EMB1473 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 242

 Score =  334 bits (856), Expect = 2e-89
 Identities = 169/236 (71%), Positives = 193/236 (81%), Gaps = 17/236 (7%)
 Frame = -2

Query: 868 MALPCSSHSTL---HSKLTFGSTSKTPFLGFTL----KPTT----LSLTQKPLQVRSQ-- 728
           M + CSS + +    S    GS  K+PFLGF+L    KP+      + +++ LQV+ +  
Sbjct: 1   MTVLCSSSTVILPSSSVKPSGSERKSPFLGFSLTAFSKPSVRVGIYANSKRGLQVKCEAE 60

Query: 727 ----DLSIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDATDKILGRLS 560
                 S+VP  QRWMF ++E +GPDIWN TWYPKASDH+NTDK W++VDATDKILGRL+
Sbjct: 61  ETTTKTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLA 120

Query: 559 STIANYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRAQKLYRRHSGRPGGMTVETF 380
           STIAN+IRGKNLA+YTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGRPGGMTVETF
Sbjct: 121 STIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETF 180

Query: 379 DQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQTPIDLPIRDK 212
           DQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ P+DLPIRDK
Sbjct: 181 DQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLPIRDK 236