BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003608
         (1269 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK95696.1| unknown [Populus trichocarpa]                          373   e-101
ref|XP_002308316.1| predicted protein [Populus trichocarpa] gi|2...   371   e-100
ref|XP_002284711.1| PREDICTED: sigma factor sigB regulation prot...   366   8e-99
ref|XP_002284715.1| PREDICTED: sigma factor sigB regulation prot...   361   3e-97
ref|XP_002515580.1| sigma factor sigb regulation protein rsbq, p...   358   1e-96

>gb|ABK95696.1| unknown [Populus trichocarpa]
          Length = 278

 Score =  373 bits (957), Expect = e-101
 Identities = 181/269 (67%), Positives = 216/269 (80%)
 Frame = -1

Query: 1143 MVVQDTSLKVSMNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 964
            MVV +  L  ++NAR+ GSG++ +ILAHGFGGDQS+WDK V  LA+   V+VFDW FSGA
Sbjct: 1    MVVPEKGLSGALNARVTGSGNEAIILAHGFGGDQSVWDKIVPRLAKHCRVLVFDWIFSGA 60

Query: 963  TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSSVFVGHSMSGMIGCLASIKRPDLFKRL 784
              DP++FDPVKYSSYDAFA DLI+L+DE++L SSV VGHSMSGMIGC+ASIKRPDLFK+L
Sbjct: 61   IKDPNLFDPVKYSSYDAFANDLISLMDELDLKSSVLVGHSMSGMIGCIASIKRPDLFKKL 120

Query: 783  VLIGASPRYLNSEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKDPPSVEQFSK 604
            +L+GASPRY+N++DYEGGF   ++E+I  NIESN+  WA  FAS VVDA DPPSV+ FSK
Sbjct: 121  ILVGASPRYINADDYEGGFSNSEVEDIISNIESNYYNWAQAFASAVVDANDPPSVDMFSK 180

Query: 603  SLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKS 424
             L RMRPE A+ +AKTVF  D    L+KV  PC I+QT+ DIVVPNSVAYYMQ+KI GKS
Sbjct: 181  CLQRMRPEFAVPVAKTVFYCDERDILEKVLTPCIIVQTTRDIVVPNSVAYYMQEKIKGKS 240

Query: 423  TVEIIEADGHFPQLTKTKQLLDVLYRVMS 337
            TVEIIE DGHFP LT  +QLLDVL   MS
Sbjct: 241  TVEIIETDGHFPHLTAHQQLLDVLIAAMS 269


>ref|XP_002308316.1| predicted protein [Populus trichocarpa] gi|222854292|gb|EEE91839.1|
            predicted protein [Populus trichocarpa]
          Length = 264

 Score =  371 bits (952), Expect = e-100
 Identities = 179/264 (67%), Positives = 215/264 (81%)
 Frame = -1

Query: 1143 MVVQDTSLKVSMNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 964
            MVV +  L  ++NAR+ GSG++ +ILAHGFGGDQS+WDK V  LA+   V+VFDW FSGA
Sbjct: 1    MVVPEKGLSGALNARVTGSGNEAIILAHGFGGDQSVWDKIVPRLAKHCRVLVFDWIFSGA 60

Query: 963  TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSSVFVGHSMSGMIGCLASIKRPDLFKRL 784
              DP++FDPVKYSSYDAFA DLI+L+DE++L SSV VGHSMSGMIGC+ASIKRPDLFK+L
Sbjct: 61   IKDPNLFDPVKYSSYDAFANDLISLMDELDLKSSVLVGHSMSGMIGCIASIKRPDLFKKL 120

Query: 783  VLIGASPRYLNSEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKDPPSVEQFSK 604
            +L+GASPRY+N++DYEGGF   ++E+I  NIESN+  WA  FAS+VVDA DPPSV+ FSK
Sbjct: 121  ILVGASPRYINADDYEGGFSNSEVEDIISNIESNYYNWAQAFASVVVDANDPPSVDMFSK 180

Query: 603  SLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKS 424
             L RMRPE A+ +AKTVF  D    L+KV  PC I+QT+ DIVVPNSVAYYMQ+KI GKS
Sbjct: 181  CLQRMRPEFAVPVAKTVFYCDERDILEKVLTPCIIVQTTRDIVVPNSVAYYMQEKIKGKS 240

Query: 423  TVEIIEADGHFPQLTKTKQLLDVL 352
            TVEIIE DGHFP LT  +QLLDVL
Sbjct: 241  TVEIIETDGHFPHLTAHQQLLDVL 264


>ref|XP_002284711.1| PREDICTED: sigma factor sigB regulation protein rsbQ isoform 1 [Vitis
            vinifera] gi|297738861|emb|CBI28106.3| unnamed protein
            product [Vitis vinifera]
          Length = 277

 Score =  366 bits (939), Expect = 8e-99
 Identities = 180/268 (67%), Positives = 211/268 (78%)
 Frame = -1

Query: 1143 MVVQDTSLKVSMNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 964
            M+V +  L  +MNAR+IG G++ ++LAHGFGGDQS+WDK    LA+ Y V+VFDWNFSGA
Sbjct: 1    MLVIEKGLSAAMNARMIGFGNEAIVLAHGFGGDQSLWDKITPHLARSYRVLVFDWNFSGA 60

Query: 963  TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSSVFVGHSMSGMIGCLASIKRPDLFKRL 784
              DPS++D  KYSSYDAFA DLIALLDE  L +SVFVGHSMSGMIGC+ASIKRP+LFKRL
Sbjct: 61   VKDPSLYDSTKYSSYDAFADDLIALLDEFKLLASVFVGHSMSGMIGCIASIKRPELFKRL 120

Query: 783  VLIGASPRYLNSEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKDPPSVEQFSK 604
            + I ASPRYLN+ +YEGGFE+ +IE+IF NIES+F  WA+NFA L VD  DP SVE+  K
Sbjct: 121  IFIAASPRYLNANNYEGGFERSEIEQIFANIESDFDKWASNFAPLAVDVNDPLSVEKVEK 180

Query: 603  SLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKS 424
             + RMRPEVAL LAKTVFC D    LDKV  PCTI+Q +NDIV P SVA YMQKKI GK+
Sbjct: 181  CIRRMRPEVALPLAKTVFCCDHRDILDKVTTPCTIVQPTNDIVAPISVAEYMQKKIKGKT 240

Query: 423  TVEIIEADGHFPQLTKTKQLLDVLYRVM 340
            TVEII+ DGHFPQLT   QLL VL  V+
Sbjct: 241  TVEIIDMDGHFPQLTAHLQLLSVLDSVL 268


>ref|XP_002284715.1| PREDICTED: sigma factor sigB regulation protein rsbQ isoform 2 [Vitis
            vinifera]
          Length = 269

 Score =  361 bits (926), Expect = 3e-97
 Identities = 177/257 (68%), Positives = 205/257 (79%)
 Frame = -1

Query: 1110 MNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGATNDPSMFDPVK 931
            MNAR+IG G++ ++LAHGFGGDQS+WDK    LA+ Y V+VFDWNFSGA  DPS++D  K
Sbjct: 4    MNARMIGFGNEAIVLAHGFGGDQSLWDKITPHLARSYRVLVFDWNFSGAVKDPSLYDSTK 63

Query: 930  YSSYDAFAKDLIALLDEMNLSSSVFVGHSMSGMIGCLASIKRPDLFKRLVLIGASPRYLN 751
            YSSYDAFA DLIALLDE  L +SVFVGHSMSGMIGC+ASIKRP+LFKRL+ I ASPRYLN
Sbjct: 64   YSSYDAFADDLIALLDEFKLLASVFVGHSMSGMIGCIASIKRPELFKRLIFIAASPRYLN 123

Query: 750  SEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKDPPSVEQFSKSLGRMRPEVAL 571
            + +YEGGFE+ +IE+IF NIES+F  WA+NFA L VD  DP SVE+  K + RMRPEVAL
Sbjct: 124  ANNYEGGFERSEIEQIFANIESDFDKWASNFAPLAVDVNDPLSVEKVEKCIRRMRPEVAL 183

Query: 570  SLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKINGKSTVEIIEADGHF 391
             LAKTVFC D    LDKV  PCTI+Q +NDIV P SVA YMQKKI GK+TVEII+ DGHF
Sbjct: 184  PLAKTVFCCDHRDILDKVTTPCTIVQPTNDIVAPISVAEYMQKKIKGKTTVEIIDMDGHF 243

Query: 390  PQLTKTKQLLDVLYRVM 340
            PQLT   QLL VL  V+
Sbjct: 244  PQLTAHLQLLSVLDSVL 260


>ref|XP_002515580.1| sigma factor sigb regulation protein rsbq, putative [Ricinus
            communis] gi|223545524|gb|EEF47029.1| sigma factor sigb
            regulation protein rsbq, putative [Ricinus communis]
          Length = 276

 Score =  358 bits (920), Expect = 1e-96
 Identities = 176/272 (64%), Positives = 217/272 (79%), Gaps = 4/272 (1%)
 Frame = -1

Query: 1143 MVVQDTSLKVSMNARIIGSGDDTVILAHGFGGDQSIWDKTVSCLAQQYSVMVFDWNFSGA 964
            MV+ +T L  +MNA++IG+G++T++LAHG+GGDQS WDK V  LA+ + ++VFDW FSGA
Sbjct: 1    MVMLETGLSTAMNAKVIGTGEETIVLAHGYGGDQSAWDKIVPDLAKYFRILVFDWLFSGA 60

Query: 963  TNDPSMFDPVKYSSYDAFAKDLIALLDEMNLSSS--VFVGHSMSGMIGCLASIKRPDLFK 790
              D  +FDP KY+S+DAFA DLI LL+EM+L SS  VFVGHSMSGMIGC+ASIKRP+LFK
Sbjct: 61   VKDQQLFDPEKYASFDAFADDLICLLEEMSLISSPVVFVGHSMSGMIGCIASIKRPELFK 120

Query: 789  RLVLIGASPRYLNSEDYEGGFEKPQIEEIFLNIESNFQMWATNFASLVVDAKD--PPSVE 616
            RL+L+GASPRY+N +DYEGGF+K  +++I  NIESNFQ W   FASLVV AKD  P SVE
Sbjct: 121  RLILVGASPRYINIDDYEGGFKKTDVDDIISNIESNFQNWTPGFASLVVGAKDKDPDSVE 180

Query: 615  QFSKSLGRMRPEVALSLAKTVFCSDVLGSLDKVQVPCTIIQTSNDIVVPNSVAYYMQKKI 436
            QF+K L  M+PE ALS+AKTVF SD    LDKV  PCTI+QT+ D+VVPNSV YYMQ+KI
Sbjct: 181  QFTKCLSNMKPEHALSVAKTVFYSDEREILDKVSTPCTIVQTTGDLVVPNSVVYYMQEKI 240

Query: 435  NGKSTVEIIEADGHFPQLTKTKQLLDVLYRVM 340
             GKS+VE I+ DGHFP LT  +QLLDVL  V+
Sbjct: 241  KGKSSVEFIDTDGHFPHLTAHQQLLDVLTAVL 272