BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003543
         (1344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285308.1| PREDICTED: sigma factor sigB regulation prot...   440   e-121
ref|XP_002510101.1| sigma factor sigb regulation protein rsbq, p...   439   e-121
ref|XP_002302409.1| predicted protein [Populus trichocarpa] gi|2...   426   e-117
pdb|4DNP|A Chain A, Crystal Structure Of Dad2                         422   e-116
gb|AFR68698.1| DAD2 [Petunia x hybrida]                               422   e-116

>ref|XP_002285308.1| PREDICTED: sigma factor sigB regulation protein rsbQ [Vitis
           vinifera]
          Length = 266

 Score =  440 bits (1131), Expect = e-121
 Identities = 211/262 (80%), Positives = 240/262 (91%)
 Frame = +1

Query: 196 ILEALNVRVVGNGEKYVVLAHGFGTDQSAWMKILPYFMSTYRIVLYDLVCAGSVNPDYFD 375
           +LEALNVRVVGNGE+ +VLAHGFGTDQSAW +ILPYF+  +RI+LYDLVCAGSVNPDYFD
Sbjct: 5   LLEALNVRVVGNGERVLVLAHGFGTDQSAWQRILPYFLPHFRIILYDLVCAGSVNPDYFD 64

Query: 376 FRRYTSLEAYVDDLLHILDALRVEKCAYVGHSVSAMIGILASIRRPNLFSKLILLGASPR 555
           FRRYT+L+A+VDDLL+ILDAL V++CAYVGHSVSAMIGILASIRRP LF+KL+L+GASPR
Sbjct: 65  FRRYTTLDAFVDDLLNILDALGVDRCAYVGHSVSAMIGILASIRRPELFTKLVLIGASPR 124

Query: 556 FLNDSDYHGGFEHGEIDKVFTAMKANYEAWVSGYAPLAVGADVPTAVREFSRTLFNMRPD 735
           FLND DYHGGFE GEI+KVF+AM+ANY+AWV G+APL+VGADVP AVREFSRTLFNMRPD
Sbjct: 125 FLNDHDYHGGFEEGEIEKVFSAMEANYDAWVHGFAPLSVGADVPAAVREFSRTLFNMRPD 184

Query: 736 ISLFVCQTVFTSDLRGYLGLVRVPCVIIQTAKDVSVPLKVANYLKTHLGGRTTVELLNTE 915
           I+LFV +T+F SDLRG LGLV+VPC IIQTAKDVSVP  VA YLK HLGGR TVE+LN E
Sbjct: 185 ITLFVSRTIFNSDLRGVLGLVKVPCCIIQTAKDVSVPTSVALYLKNHLGGRNTVEMLNVE 244

Query: 916 GHLPHLSAPAVLVPVLRRALAR 981
           GHLPHLSAP +L PVLRRAL+R
Sbjct: 245 GHLPHLSAPMLLAPVLRRALSR 266


>ref|XP_002510101.1| sigma factor sigb regulation protein rsbq, putative [Ricinus
           communis] gi|223550802|gb|EEF52288.1| sigma factor sigb
           regulation protein rsbq, putative [Ricinus communis]
          Length = 266

 Score =  439 bits (1130), Expect = e-121
 Identities = 214/266 (80%), Positives = 239/266 (89%)
 Frame = +1

Query: 184 MTINILEALNVRVVGNGEKYVVLAHGFGTDQSAWMKILPYFMSTYRIVLYDLVCAGSVNP 363
           M   +LEALNVRVVG+G+K +VLAHGFGTDQSAW +ILP+F   Y I+LYDLVCAGSVNP
Sbjct: 1   MGTTLLEALNVRVVGSGDKILVLAHGFGTDQSAWQRILPFFTQNYSIILYDLVCAGSVNP 60

Query: 364 DYFDFRRYTSLEAYVDDLLHILDALRVEKCAYVGHSVSAMIGILASIRRPNLFSKLILLG 543
           DYFDFRRYT+L+AYVDDLL+ILDALRV++CAYVGHSVSAMIGILASIRRP LFSKLIL+G
Sbjct: 61  DYFDFRRYTTLDAYVDDLLNILDALRVDRCAYVGHSVSAMIGILASIRRPELFSKLILIG 120

Query: 544 ASPRFLNDSDYHGGFEHGEIDKVFTAMKANYEAWVSGYAPLAVGADVPTAVREFSRTLFN 723
           ASPRFLND DYHGGFE  +I+ VFTAM+ANYEAWV+G+APLAVGADVP AVREFSRTLFN
Sbjct: 121 ASPRFLNDKDYHGGFERPDIENVFTAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFN 180

Query: 724 MRPDISLFVCQTVFTSDLRGYLGLVRVPCVIIQTAKDVSVPLKVANYLKTHLGGRTTVEL 903
           MRPDI+LFV +TVF SDLRG LGLV+VPC IIQTAKDVSVP  VA YL+ HLGGR TVE+
Sbjct: 181 MRPDITLFVSRTVFNSDLRGILGLVKVPCCIIQTAKDVSVPASVAEYLRIHLGGRNTVEI 240

Query: 904 LNTEGHLPHLSAPAVLVPVLRRALAR 981
           L TEGHLPHLSAPA+L  VLRRAL+R
Sbjct: 241 LRTEGHLPHLSAPALLAQVLRRALSR 266


>ref|XP_002302409.1| predicted protein [Populus trichocarpa] gi|222844135|gb|EEE81682.1|
           predicted protein [Populus trichocarpa]
          Length = 266

 Score =  426 bits (1096), Expect = e-117
 Identities = 204/266 (76%), Positives = 235/266 (88%)
 Frame = +1

Query: 184 MTINILEALNVRVVGNGEKYVVLAHGFGTDQSAWMKILPYFMSTYRIVLYDLVCAGSVNP 363
           M  +IL+ALNVRV G G+K++V AHGFGTDQSAW +ILP+F   YR++L+DLVCAGSVNP
Sbjct: 1   MGSHILDALNVRVEGQGDKFLVFAHGFGTDQSAWQRILPFFTPYYRVILFDLVCAGSVNP 60

Query: 364 DYFDFRRYTSLEAYVDDLLHILDALRVEKCAYVGHSVSAMIGILASIRRPNLFSKLILLG 543
           DYF+FRRYT+LEAYVDDLL+ILD L V++C YVGHSVSAMIGILASIRRP LF+KLI++G
Sbjct: 61  DYFNFRRYTNLEAYVDDLLNILDTLGVDRCFYVGHSVSAMIGILASIRRPELFTKLIMIG 120

Query: 544 ASPRFLNDSDYHGGFEHGEIDKVFTAMKANYEAWVSGYAPLAVGADVPTAVREFSRTLFN 723
           ASPRFLND DYHGGFE  EI+ VF AM+ANYEAWV G+APLAVGADVP AVREFSRTLFN
Sbjct: 121 ASPRFLNDKDYHGGFEQEEIESVFVAMEANYEAWVKGFAPLAVGADVPAAVREFSRTLFN 180

Query: 724 MRPDISLFVCQTVFTSDLRGYLGLVRVPCVIIQTAKDVSVPLKVANYLKTHLGGRTTVEL 903
           MRPDI+LFV +TVF SDLRG LGLV+VPC +IQT+KDVSVP  VA YLK HLGG+ TVE+
Sbjct: 181 MRPDITLFVSRTVFNSDLRGILGLVKVPCCVIQTSKDVSVPASVAKYLKNHLGGKATVEM 240

Query: 904 LNTEGHLPHLSAPAVLVPVLRRALAR 981
           L TEGHLPHLSAPA+L PV+RRAL+R
Sbjct: 241 LRTEGHLPHLSAPAMLAPVIRRALSR 266


>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
          Length = 269

 Score =  422 bits (1086), Expect = e-116
 Identities = 204/261 (78%), Positives = 232/261 (88%)
 Frame = +1

Query: 196 ILEALNVRVVGNGEKYVVLAHGFGTDQSAWMKILPYFMSTYRIVLYDLVCAGSVNPDYFD 375
           +L+ALNVRVVG+GE+ +VLAHGFGTDQSAW +ILP+F+  YR+VLYDLVCAGSVNPD+FD
Sbjct: 7   LLDALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFD 66

Query: 376 FRRYTSLEAYVDDLLHILDALRVEKCAYVGHSVSAMIGILASIRRPNLFSKLILLGASPR 555
           FRRYT+L+ YVDDLLHILDAL ++ CAYVGHSVSAMIGILASIRRP LFSKLIL+GASPR
Sbjct: 67  FRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPR 126

Query: 556 FLNDSDYHGGFEHGEIDKVFTAMKANYEAWVSGYAPLAVGADVPTAVREFSRTLFNMRPD 735
           FLND DYHGGFE GEI+KVF+AM+ANYEAWV+G+APLAVGADVP AVREFSRTLFNMRPD
Sbjct: 127 FLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNMRPD 186

Query: 736 ISLFVCQTVFTSDLRGYLGLVRVPCVIIQTAKDVSVPLKVANYLKTHLGGRTTVELLNTE 915
           I+LFV +TVF SD+RG LGLV+VPC I QTA+D SVP  VA YLK HLGG+ TV  LN E
Sbjct: 187 ITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHWLNIE 246

Query: 916 GHLPHLSAPAVLVPVLRRALA 978
           GHLPHLSAP +L   LRRAL+
Sbjct: 247 GHLPHLSAPTLLAQELRRALS 267


>gb|AFR68698.1| DAD2 [Petunia x hybrida]
          Length = 267

 Score =  422 bits (1086), Expect = e-116
 Identities = 204/261 (78%), Positives = 232/261 (88%)
 Frame = +1

Query: 196 ILEALNVRVVGNGEKYVVLAHGFGTDQSAWMKILPYFMSTYRIVLYDLVCAGSVNPDYFD 375
           +L+ALNVRVVG+GE+ +VLAHGFGTDQSAW +ILP+F+  YR+VLYDLVCAGSVNPD+FD
Sbjct: 5   LLDALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFD 64

Query: 376 FRRYTSLEAYVDDLLHILDALRVEKCAYVGHSVSAMIGILASIRRPNLFSKLILLGASPR 555
           FRRYT+L+ YVDDLLHILDAL ++ CAYVGHSVSAMIGILASIRRP LFSKLIL+GASPR
Sbjct: 65  FRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPR 124

Query: 556 FLNDSDYHGGFEHGEIDKVFTAMKANYEAWVSGYAPLAVGADVPTAVREFSRTLFNMRPD 735
           FLND DYHGGFE GEI+KVF+AM+ANYEAWV+G+APLAVGADVP AVREFSRTLFNMRPD
Sbjct: 125 FLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNMRPD 184

Query: 736 ISLFVCQTVFTSDLRGYLGLVRVPCVIIQTAKDVSVPLKVANYLKTHLGGRTTVELLNTE 915
           I+LFV +TVF SD+RG LGLV+VPC I QTA+D SVP  VA YLK HLGG+ TV  LN E
Sbjct: 185 ITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHWLNIE 244

Query: 916 GHLPHLSAPAVLVPVLRRALA 978
           GHLPHLSAP +L   LRRAL+
Sbjct: 245 GHLPHLSAPTLLAQELRRALS 265