BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003478
         (824 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   322   5e-86
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]            315   6e-84
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           315   8e-84
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         309   6e-82
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]      295   6e-78

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  322 bits (826), Expect = 5e-86
 Identities = 169/277 (61%), Positives = 200/277 (72%), Gaps = 3/277 (1%)
 Frame = +3

Query: 3    KARLVVKGFGQRKGIDFDEIFSPVVKMTSIRVVLGMAASMNLEVEQLDVKTAFLHGDLEE 182
            KARLVVKGF Q+KGIDFDEIFSPVVKMTSIR +L +AAS++LEVEQLDVKTAFLHGDLEE
Sbjct: 875  KARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEE 934

Query: 183  DVYMDQPEGFEVKGKEHLVCKLIKSLYGLKQAPRQWYIKFDSFMVKQDYMKSASNNYVFV 362
            ++YM+QPEGFEV GK+H+VCKL KSLYGLKQAPRQWY+KFDSFM  Q Y+K+ S+  V+ 
Sbjct: 935  EIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYF 994

Query: 363  QKFTYGNFIVLLLYVDDMLIVGPXXXXXXXXXXXXXXSFEMKDLGQAKQILGMRITRDRK 542
            ++F+  NFI+LLLYVDDMLIVG               SF+MKDLG A+QILGM+I R+R 
Sbjct: 995  KRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERT 1054

Query: 543  SGKLWLSQESYIEXXXXXXXXXXXXXXXXXXXXXXXXESYIEKVLKRFNMDQAKPVSCPL 722
            S KLWLSQ                             E YIE+VL+RFNM  AKPVS PL
Sbjct: 1055 SRKLWLSQ-----------------------------EKYIERVLERFNMKNAKPVSTPL 1085

Query: 723  GGQFRMTKEMCPKGEHE---MEKIPYASAVGSLMYAM 824
             G  +++K+MCP    E   M K+PY+SAVGSLMYAM
Sbjct: 1086 AGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAM 1122


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score =  315 bits (808), Expect = 6e-84
 Identities = 165/277 (59%), Positives = 195/277 (70%), Gaps = 3/277 (1%)
 Frame = +3

Query: 3   KARLVVKGFGQRKGIDFDEIFSPVVKMTSIRVVLGMAASMNLEVEQLDVKTAFLHGDLEE 182
           KARLVVKG  Q+KGIDFDEIF+PVVKMTSIR++LG+A  +NLE+EQLDVKTAFLHGDL E
Sbjct: 235 KARLVVKGCHQKKGIDFDEIFAPVVKMTSIRMILGLATCLNLELEQLDVKTAFLHGDLHE 294

Query: 183 DVYMDQPEGFEVKGKEHLVCKLIKSLYGLKQAPRQWYIKFDSFMVKQDYMKSASNNYVFV 362
           ++YM+QPEGFEVKGKE+ VCKL KSLYGLKQAPRQWY KFDSFM   +Y ++ ++  V+ 
Sbjct: 295 EIYMEQPEGFEVKGKENFVCKLKKSLYGLKQAPRQWYHKFDSFMSNNEYKRTTADPCVYF 354

Query: 363 QKFTYGNFIVLLLYVDDMLIVGPXXXXXXXXXXXXXXSFEMKDLGQAKQILGMRITRDRK 542
           +KF+ GNFI+L LYVDDMLIVG               SF+MKDLG AKQILGM I RDRK
Sbjct: 355 RKFSEGNFIILCLYVDDMLIVGQDVEMICRLKEDLSKSFDMKDLGPAKQILGMEIARDRK 414

Query: 543 SGKLWLSQESYIEXXXXXXXXXXXXXXXXXXXXXXXXESYIEKVLKRFNMDQAKPVSCPL 722
           +GKLWLSQ                             E+YIE+VL+RFNM  AKPV+ PL
Sbjct: 415 AGKLWLSQ-----------------------------ENYIERVLERFNMKNAKPVNTPL 445

Query: 723 GGQFRMTKEMCPKGEHE---MEKIPYASAVGSLMYAM 824
              F+++K  CP  E E   M  IPY+S VGSLMYAM
Sbjct: 446 AAHFKLSKRCCPTTEKEKESMSHIPYSSVVGSLMYAM 482


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  315 bits (807), Expect = 8e-84
 Identities = 169/277 (61%), Positives = 196/277 (70%), Gaps = 3/277 (1%)
 Frame = +3

Query: 3    KARLVVKGFGQRKGIDFDEIFSPVVKMTSIRVVLGMAASMNLEVEQLDVKTAFLHGDLEE 182
            KARLVVKGF QRKGIDFDEIFSPVVKMTSIR VLG+AAS+NLEVEQ+DVKTAFLHGDLEE
Sbjct: 876  KARLVVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEE 935

Query: 183  DVYMDQPEGFEVKGKEHLVCKLIKSLYGLKQAPRQWYIKFDSFMVKQDYMKSASNNYVFV 362
            ++YM+QP+GF+ KGKE  VC+L KSLYGLKQAPRQWY KF+S M +  Y K+ S++ VF 
Sbjct: 936  EIYMEQPDGFQQKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFA 995

Query: 363  QKFTYGNFIVLLLYVDDMLIVGPXXXXXXXXXXXXXXSFEMKDLGQAKQILGMRITRDRK 542
            QKF+  +FI+LLLYVDDMLIVG                F MKDLG AKQILGMRI RDR+
Sbjct: 996  QKFSDDDFIILLLYVDDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDRE 1055

Query: 543  SGKLWLSQESYIEXXXXXXXXXXXXXXXXXXXXXXXXESYIEKVLKRFNMDQAKPVSCPL 722
            + KLWLSQ                             E YIEKVL+RFNM++ K VSCPL
Sbjct: 1056 AKKLWLSQ-----------------------------EKYIEKVLQRFNMEKTKAVSCPL 1086

Query: 723  GGQFRMTKEMCPKGEHE---MEKIPYASAVGSLMYAM 824
               FR++ +  P  + E   ME+IPYASAVGSLMYAM
Sbjct: 1087 ANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYAM 1123


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  309 bits (791), Expect = 6e-82
 Identities = 160/277 (57%), Positives = 199/277 (71%), Gaps = 3/277 (1%)
 Frame = +3

Query: 3    KARLVVKGFGQRKGIDFDEIFSPVVKMTSIRVVLGMAASMNLEVEQLDVKTAFLHGDLEE 182
            KARLVVKGF Q+KGIDFDEIFSPVVK +SIRVVLG+AA +++E+EQ+DVKTAFLHGDL+E
Sbjct: 873  KARLVVKGFSQKKGIDFDEIFSPVVKFSSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDE 932

Query: 183  DVYMDQPEGFEVKGKEHLVCKLIKSLYGLKQAPRQWYIKFDSFMVKQDYMKSASNNYVFV 362
            ++YM+QPEGF+VKGKE  VC+L KSLYGLKQAPRQWY KF S M K  Y K++S++ VFV
Sbjct: 933  EIYMEQPEGFKVKGKEDYVCRLKKSLYGLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVFV 992

Query: 363  QKFTYGNFIVLLLYVDDMLIVGPXXXXXXXXXXXXXXSFEMKDLGQAKQILGMRITRDRK 542
             +++  +F++LLLYVDDMLIVG               SF MKD+G AKQILGM+I RDR+
Sbjct: 993  NRYSDDDFVILLLYVDDMLIVGRNASRIQELKQELSKSFSMKDMGPAKQILGMKIIRDRQ 1052

Query: 543  SGKLWLSQESYIEXXXXXXXXXXXXXXXXXXXXXXXXESYIEKVLKRFNMDQAKPVSCPL 722
            + KLWLSQ                             E YIEKVL+RF+M++AKPVS PL
Sbjct: 1053 NKKLWLSQ-----------------------------EKYIEKVLERFHMNEAKPVSTPL 1083

Query: 723  GGQFRMTKEMCPKGE---HEMEKIPYASAVGSLMYAM 824
               F++ K+ CP  E    EM+++PY+SAVGSLMYAM
Sbjct: 1084 DMHFKLCKKQCPSSEKEKEEMQRVPYSSAVGSLMYAM 1120


>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score =  295 bits (756), Expect = 6e-78
 Identities = 158/277 (57%), Positives = 196/277 (70%), Gaps = 3/277 (1%)
 Frame = +3

Query: 3    KARLVVKGFGQRKGIDFDEIFSPVVKMTSIRVVLGMAASMNLEVEQLDVKTAFLHGDLEE 182
            KARLVVKGF QRKGIDF+EIFSPVVKM+SIR+VL +AA+++LEVEQ+DVKTAFLHGDLEE
Sbjct: 819  KARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEE 878

Query: 183  DVYMDQPEGFEVKGKEHLVCKLIKSLYGLKQAPRQWYIKFDSFMVKQDYMKSASNNYVFV 362
            ++YM QP+GF V+GKE  VC+L KSLYGLKQAPRQWY KF+S M +Q Y K+ S++ VFV
Sbjct: 879  EIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFV 938

Query: 363  QKFTYGNFIVLLLYVDDMLIVGPXXXXXXXXXXXXXXSFEMKDLGQAKQILGMRITRDRK 542
            +KF   +FI+LLLYVDD+LIVG               SF MKD+G AKQILG+RI RDR+
Sbjct: 939  KKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQ 998

Query: 543  SGKLWLSQESYIEXXXXXXXXXXXXXXXXXXXXXXXXESYIEKVLKRFNMDQAKPVSCPL 722
              KLWLSQ                             E+Y+++VL+RF M+ AK VS PL
Sbjct: 999  EKKLWLSQ-----------------------------ENYVKRVLQRFQMENAKVVSTPL 1029

Query: 723  GGQFRMTKEMCPKGEHE---MEKIPYASAVGSLMYAM 824
               F+++ +  P  E+E   M++IPYASAVGSLMYAM
Sbjct: 1030 ATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSLMYAM 1066