BLASTX nr result
ID: Coptis21_contig00003469
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00003469
(2609 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002516670.1| ATP-dependent clp protease ATP-binding subun... 735 0.0
ref|XP_003634146.1| PREDICTED: ATP-dependent Clp protease ATP-bi... 729 0.0
ref|XP_002272792.1| PREDICTED: ATP-dependent Clp protease ATP-bi... 724 0.0
emb|CBI23009.3| unnamed protein product [Vitis vinifera] 721 0.0
ref|NP_568792.1| CLP protease regulatory subunit X [Arabidopsis ... 701 0.0
>ref|XP_002516670.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
[Ricinus communis] gi|223544165|gb|EEF45689.1|
ATP-dependent clp protease ATP-binding subunit clpx,
putative [Ricinus communis]
Length = 565
Score = 735 bits (1898), Expect = 0.0
Identities = 402/575 (69%), Positives = 450/575 (78%), Gaps = 15/575 (2%)
Frame = +1
Query: 121 MAAAIRSKSVKHIASQSNRYFVFNHYMHIG-RIIXXXXXXXXXXXXXGDLSGKRPYLFYP 297
MAA R+K K A RYF+FN YMH G I+ D PY F
Sbjct: 1 MAAVFRAKPSKETAFYQFRYFIFN-YMHAGGAIMSTSTSYCTHRNKWDDHFSNTPYHFTS 59
Query: 298 FKMVSFKGDYDDKGS---------SNKLCRVSCTSSSGYSGEPPEFWQPPGDGVIMAAPD 450
FK VS +G++ +KG+ S KL + S S Y G+PPE WQPPGDG+ A
Sbjct: 60 FKPVSLRGEFIEKGNQLLDNKRNWSEKL-KNSSGGGSNY-GDPPEVWQPPGDGI--ATVR 115
Query: 451 GSLVRXXXXXXXXXXXXXXNSKDGCWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLS 630
S VR NSKDGCWGG+++GN+FPTPKEIC+GLDKFVIGQ+RAKKVLS
Sbjct: 116 VSEVRGGEGRGGPGS----NSKDGCWGGSDLGNNFPTPKEICRGLDKFVIGQDRAKKVLS 171
Query: 631 VAVYNHYKRIYFESQPKCAEGSTNGE-----DNDSVELEKSNVLLMGPTGSGKTLLAKTL 795
VAVYNHYKRIY +S K + G + D D VELEKSN+LLMGPTGSGKTLLAKTL
Sbjct: 172 VAVYNHYKRIYHDSIQKWSAGDSGNNKAEAMDEDGVELEKSNILLMGPTGSGKTLLAKTL 231
Query: 796 ARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKK 975
ARFVNVPFVIADATTLTQAGYVGEDVESILYKLLM ADYNV AAQQGIVYIDEVDKITKK
Sbjct: 232 ARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMAADYNVAAAQQGIVYIDEVDKITKK 291
Query: 976 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFI 1155
AES+NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFI
Sbjct: 292 AESVNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFI 351
Query: 1156 DLEKTISERRQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGR 1335
DLEKTISERRQDSSIGFGAPVRANMR G +T+AA+TSSLLETVES DLI+YGLIPEFVGR
Sbjct: 352 DLEKTISERRQDSSIGFGAPVRANMRMGSVTSAAVTSSLLETVESGDLISYGLIPEFVGR 411
Query: 1336 FPVLVSLSALSEDQLVQVLIEPKNALGKQYRKMFQMNNVKLHFTEVALRLIARKAMARST 1515
FPVLVSLSAL+E+QLVQVL EPKNALGKQY+KMFQMN V+LHFTE ALRLIA+KA+ ++T
Sbjct: 412 FPVLVSLSALTENQLVQVLTEPKNALGKQYKKMFQMNGVRLHFTENALRLIAKKAITKNT 471
Query: 1516 GARGLRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSIERSGRGAKILYGDGAFE 1695
GARGLR++LENILMDAMYEIPD++TG+D IDAVVVDEEAVG+ E G G +ILYG GA +
Sbjct: 472 GARGLRAILENILMDAMYEIPDVKTGEDIIDAVVVDEEAVGT-EGCGTGGRILYGKGALD 530
Query: 1696 LYLSQQKSKEFETREEGSERMPDAEPELPSIVVSM 1800
YL++ K K+ E +GS+ P+ E EL SIV SM
Sbjct: 531 RYLAENKLKDSERTVDGSDGDPEVETELSSIVASM 565
>ref|XP_003634146.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
isoform 2 [Vitis vinifera]
Length = 577
Score = 729 bits (1881), Expect = 0.0
Identities = 406/583 (69%), Positives = 453/583 (77%), Gaps = 23/583 (3%)
Frame = +1
Query: 121 MAAAIRSKSVKHIAS---QSNRYFVFNHYMHIGRIIXXXXXXXXXXXXXGDLSGKRPYLF 291
MAAA+RSKS + A RYF+ NH MH GR+ S PY F
Sbjct: 1 MAAALRSKSSRETALLTFSQFRYFILNH-MHAGRLPNSYISHKPNCDHCFTHS-HTPYHF 58
Query: 292 YPFKMVSFKGDYDDKG--------------SSNKLCRVSCTSSSGYSGEPPEFWQPPGDG 429
FK VS +G+ DKG S+N+ ++S + G+PPE W GDG
Sbjct: 59 TSFKPVSLRGELVDKGLEFFDNQRFSKVGFSTNESKKLSRDTILNSFGDPPEVWS--GDG 116
Query: 430 VIM--AAPDGSLVRXXXXXXXXXXXXXX---NSKDGCWGGANMGNDFPTPKEICQGLDKF 594
+++ +LVR NSKD WGG+N+G++FPTPKEIC+GLDKF
Sbjct: 117 IVVRQGGSGSNLVRGGGGAGANGGAGSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKF 176
Query: 595 VIGQERAKKVLSVAVYNHYKRIYFESQPKCAEGSTNGEDNDSVELEKSNVLLMGPTGSGK 774
VIGQERAKKVLSVAVYNHYKRIY +S KC + DNDSVELEKSN+LLMGPTGSGK
Sbjct: 177 VIGQERAKKVLSVAVYNHYKRIYHQSLQKC-DDKAEATDNDSVELEKSNILLMGPTGSGK 235
Query: 775 TLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDE 954
TLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNV AAQQGIVYIDE
Sbjct: 236 TLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDE 295
Query: 955 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILF 1134
VDKITKKAESLN+SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILF
Sbjct: 296 VDKITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILF 355
Query: 1135 ICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGL 1314
ICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGG T+AA+ SSLLETVESSDLI+YGL
Sbjct: 356 ICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESSDLISYGL 415
Query: 1315 IPEFVGRFPVLVSLSALSEDQLVQVLIEPKNALGKQYRKMFQMNNVKLHFTEVALRLIAR 1494
IPEFVGRFP+LVSLSAL+E+QLV+VL EPKNALGKQY+KMFQMN VKLHFT+ ALRLI+R
Sbjct: 416 IPEFVGRFPILVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISR 475
Query: 1495 KAMARSTGARGLRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSIERSGRGAKIL 1674
KAM+++TGARGLRS+LENILM+AMYEIPD+ TG D IDAVVVD+EAVGS + G GAKIL
Sbjct: 476 KAMSKNTGARGLRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGS-DGHGFGAKIL 534
Query: 1675 YGDGAFELYLSQQKSKEFETREEG-SERMPDAEPELPSIVVSM 1800
YG GA + YLSQ K KE ET EG S+ +AE E+PSIV SM
Sbjct: 535 YGKGALDCYLSQHKLKETETPMEGSSDGEAEAEAEIPSIVASM 577
>ref|XP_002272792.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
isoform 1 [Vitis vinifera]
Length = 583
Score = 724 bits (1869), Expect = 0.0
Identities = 406/588 (69%), Positives = 454/588 (77%), Gaps = 28/588 (4%)
Frame = +1
Query: 121 MAAAIRSKSVKHIAS---QSNRYFVFNHYMHIGRIIXXXXXXXXXXXXXGDLSGKRPYLF 291
MAAA+RSKS + A RYF+ NH MH GR+ S PY F
Sbjct: 1 MAAALRSKSSRETALLTFSQFRYFILNH-MHAGRLPNSYISHKPNCDHCFTHS-HTPYHF 58
Query: 292 YPFKMVSFKGDYDDKG--------------SSNKLCRVSCTSSSGYSGEPPEFWQPPGDG 429
FK VS +G+ DKG S+N+ ++S + G+PPE W GDG
Sbjct: 59 TSFKPVSLRGELVDKGLEFFDNQRFSKVGFSTNESKKLSRDTILNSFGDPPEVWS--GDG 116
Query: 430 VIM--AAPDGSLVRXXXXXXXXXXXXXX---NSKDGCWGGANMGNDFPTPKEICQGLDKF 594
+++ +LVR NSKD WGG+N+G++FPTPKEIC+GLDKF
Sbjct: 117 IVVRQGGSGSNLVRGGGGAGANGGAGSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKF 176
Query: 595 VIGQERAKKVLSVAVYNHYKRIYFESQPKCAEGSTNGE-----DNDSVELEKSNVLLMGP 759
VIGQERAKKVLSVAVYNHYKRIY +S K T+ + DNDSVELEKSN+LLMGP
Sbjct: 177 VIGQERAKKVLSVAVYNHYKRIYHQSLQKWPAEDTSDDKAEATDNDSVELEKSNILLMGP 236
Query: 760 TGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGI 939
TGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNV AAQQGI
Sbjct: 237 TGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGI 296
Query: 940 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT 1119
VYIDEVDKITKKAESLN+SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT
Sbjct: 297 VYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT 356
Query: 1120 KDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESSDL 1299
KDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGG T+AA+ SSLLETVESSDL
Sbjct: 357 KDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESSDL 416
Query: 1300 IAYGLIPEFVGRFPVLVSLSALSEDQLVQVLIEPKNALGKQYRKMFQMNNVKLHFTEVAL 1479
I+YGLIPEFVGRFP+LVSLSAL+E+QLV+VL EPKNALGKQY+KMFQMN VKLHFT+ AL
Sbjct: 417 ISYGLIPEFVGRFPILVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNAL 476
Query: 1480 RLIARKAMARSTGARGLRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSIERSGR 1659
RLI+RKAM+++TGARGLRS+LENILM+AMYEIPD+ TG D IDAVVVD+EAVGS + G
Sbjct: 477 RLISRKAMSKNTGARGLRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGS-DGHGF 535
Query: 1660 GAKILYGDGAFELYLSQQKSKEFETREEG-SERMPDAEPELPSIVVSM 1800
GAKILYG GA + YLSQ K KE ET EG S+ +AE E+PSIV SM
Sbjct: 536 GAKILYGKGALDCYLSQHKLKETETPMEGSSDGEAEAEAEIPSIVASM 583
>emb|CBI23009.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 721 bits (1861), Expect = 0.0
Identities = 405/588 (68%), Positives = 453/588 (77%), Gaps = 28/588 (4%)
Frame = +1
Query: 121 MAAAIRSKSVKHIAS---QSNRYFVFNHYMHIGRIIXXXXXXXXXXXXXGDLSGKRPYLF 291
MAAA+RSKS + A RYF+ NH MH GR+ S PY F
Sbjct: 1 MAAALRSKSSRETALLTFSQFRYFILNH-MHAGRLPNSYISHKPNCDHCFTHS-HTPYHF 58
Query: 292 YPFKMVSFKGDYDDKG--------------SSNKLCRVSCTSSSGYSGEPPEFWQPPGDG 429
FK VS +G+ DKG S+N+ ++S + G+PPE W GDG
Sbjct: 59 TSFKPVSLRGELVDKGLEFFDNQRFSKVGFSTNESKKLSRDTILNSFGDPPEVWS--GDG 116
Query: 430 VIM--AAPDGSLVRXXXXXXXXXXXXXX---NSKDGCWGGANMGNDFPTPKEICQGLDKF 594
+++ +LVR NSKD WGG+N+G++FPTPKEIC+GLDKF
Sbjct: 117 IVVRQGGSGSNLVRGGGGAGANGGAGSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKF 176
Query: 595 VIGQERAKKVLSVAVYNHYKRIYFESQPKCAEGSTNGE-----DNDSVELEKSNVLLMGP 759
VIGQERAKKVLSVAVYNHYKRIY +S K T+ + DNDSVELEKSN+LLMGP
Sbjct: 177 VIGQERAKKVLSVAVYNHYKRIYHQSLQKWPAEDTSDDKAEATDNDSVELEKSNILLMGP 236
Query: 760 TGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGI 939
TGSGKTLLAKTLARFVNVPFVIADATTLTQA YVGEDVESILYKLLMVADYNV AAQQGI
Sbjct: 237 TGSGKTLLAKTLARFVNVPFVIADATTLTQARYVGEDVESILYKLLMVADYNVAAAQQGI 296
Query: 940 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT 1119
VYIDEVDKITKKAESLN+SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT
Sbjct: 297 VYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT 356
Query: 1120 KDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESSDL 1299
KDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGG T+AA+ SSLLETVESSDL
Sbjct: 357 KDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESSDL 416
Query: 1300 IAYGLIPEFVGRFPVLVSLSALSEDQLVQVLIEPKNALGKQYRKMFQMNNVKLHFTEVAL 1479
I+YGLIPEFVGRFP+LVSLSAL+E+QLV+VL EPKNALGKQY+KMFQMN VKLHFT+ AL
Sbjct: 417 ISYGLIPEFVGRFPILVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNAL 476
Query: 1480 RLIARKAMARSTGARGLRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSIERSGR 1659
RLI+RKAM+++TGARGLRS+LENILM+AMYEIPD+ TG D IDAVVVD+EAVGS + G
Sbjct: 477 RLISRKAMSKNTGARGLRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGS-DGHGF 535
Query: 1660 GAKILYGDGAFELYLSQQKSKEFETREEG-SERMPDAEPELPSIVVSM 1800
GAKILYG GA + YLSQ K KE ET EG S+ +AE E+PSIV SM
Sbjct: 536 GAKILYGKGALDCYLSQHKLKETETPMEGSSDGEAEAEAEIPSIVASM 583
>ref|NP_568792.1| CLP protease regulatory subunit X [Arabidopsis thaliana]
gi|9759182|dbj|BAB09797.1| ATP-dependent Clp protease
regulatory subunit CLPX [Arabidopsis thaliana]
gi|14334860|gb|AAK59608.1| putative ATP-dependent Clp
protease ATP-binding subunit ClpX1 [Arabidopsis thaliana]
gi|23296603|gb|AAN13130.1| putative ATP-dependent Clp
protease ATP-binding subunit ClpX1 [Arabidopsis thaliana]
gi|332008960|gb|AED96343.1| CLP protease regulatory
subunit X [Arabidopsis thaliana]
Length = 579
Score = 701 bits (1810), Expect = 0.0
Identities = 385/590 (65%), Positives = 442/590 (74%), Gaps = 30/590 (5%)
Frame = +1
Query: 121 MAAAIRSKSVKHIASQSN---RYFVFNHYMHIGRIIXXXXXXXXXXXXXGDLSGKRPYLF 291
MAAA+RS + + AS + RYF+FN +H R
Sbjct: 1 MAAALRSNTSRETASLTLSHFRYFIFNR-IHTARTATSPPHCNHRSKSDEK--------- 50
Query: 292 YPFKMVSFKGDY-DDKGSSNKLCRVSCTSSS-------------GYSGEPPEFWQPPGDG 429
+P+K+ S + D++G + C ++ G+PP+ WQPPGDG
Sbjct: 51 FPYKISSLGTSFLDNRGGGERRNSTKCYAAQKKLSGVGSSVVILSSQGDPPDLWQPPGDG 110
Query: 430 VIMAAPDGSLVRXXXXXXXXXXXXXX-------NSKDGCWGGANMGNDFPTPKEICQGLD 588
V + +GS V NSK+ CWGG+N+G+DFPTPKEIC+GL+
Sbjct: 111 VSVRV-NGSSVNLGRGGGGGGSSPGGPGNGTGSNSKEDCWGGSNLGSDFPTPKEICKGLN 169
Query: 589 KFVIGQERAKKVLSVAVYNHYKRIYFESQPKCAEGSTNGE-----DNDSVELEKSNVLLM 753
KFVIGQERAKKVLSVAVYNHYKRIY ES K + G T+ D+D VELEKSN+LLM
Sbjct: 170 KFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAAKPADDDMVELEKSNILLM 229
Query: 754 GPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVEAAQQ 933
GPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL VADYNV AAQQ
Sbjct: 230 GPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVADYNVAAAQQ 289
Query: 934 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQI 1113
GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT+VNVPEKGARKHPRGDNIQI
Sbjct: 290 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 349
Query: 1114 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGLTNAAITSSLLETVESS 1293
DTKDILFICGGAF+D+EKTISERR DSSIGFGAPVRANMR GG+TNAA+ S+L+ETVESS
Sbjct: 350 DTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTNAAVASNLMETVESS 409
Query: 1294 DLIAYGLIPEFVGRFPVLVSLSALSEDQLVQVLIEPKNALGKQYRKMFQMNNVKLHFTEV 1473
DLIAYGLIPEFVGRFPVLVSLSAL+E+QL+QVL EPKNALGKQY+KM+QMN+VKLHFTE
Sbjct: 410 DLIAYGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFTES 469
Query: 1474 ALRLIARKAMARSTGARGLRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSIERS 1653
ALRLIARKA+ ++TGARGLR+LLE+ILMD+MYEIPD TG D I+AVVVDEEAV R
Sbjct: 470 ALRLIARKAITKNTGARGLRALLESILMDSMYEIPDEGTGSDMIEAVVVDEEAVEGEGRR 529
Query: 1654 GRGAKILYGDGAFELYLSQQKSKEF-ETREEGSERMPDAEPELPSIVVSM 1800
G GAKIL G GA YLS+ SK+ +T +EGS+ + E E+PS+V SM
Sbjct: 530 GSGAKILRGKGALARYLSETNSKDSPQTTKEGSDGETEVEAEIPSVVASM 579