BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003349
         (678 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago tr...   221   8e-56
gb|ACJ84724.1| unknown [Medicago truncatula] gi|388501002|gb|AFK...   221   8e-56
ref|XP_002528105.1| chlorophyll A/B binding protein, putative [R...   217   1e-54
ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [P...   217   1e-54
prf||1908421A light-harvesting complex IIa protein                    215   6e-54

>ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
           gi|355505708|gb|AES86850.1| Chlorophyll a-b binding
           protein [Medicago truncatula]
          Length = 347

 Score =  221 bits (564), Expect = 8e-56
 Identities = 120/176 (68%), Positives = 126/176 (71%), Gaps = 1/176 (0%)
 Frame = -3

Query: 532 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXP-TTDRPLWFPGAKAPEYLDGS 356
           S F+GTRL+E   SNSGR QARFGFG              +TDRPLWFPGAK+PE+LDGS
Sbjct: 70  SSFIGTRLREVQ-SNSGRIQARFGFGKKKAAPKKPSRSSPSTDRPLWFPGAKSPEWLDGS 128

Query: 355 FVGDYGFDPFGLGKPAXXXXXXXXXXXXXXXXXXXXXXFGLGKPAEYLQFDLDSLDQNLA 176
            VGDYGFDPFGLG                             KPAEYLQFDLDSLDQNLA
Sbjct: 129 LVGDYGFDPFGLG-----------------------------KPAEYLQFDLDSLDQNLA 159

Query: 175 KNLAGDVIGTRSEDADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 8
           KNLAGDVIGTR+E ADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE
Sbjct: 160 KNLAGDVIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 215


>gb|ACJ84724.1| unknown [Medicago truncatula] gi|388501002|gb|AFK38567.1| unknown
           [Medicago truncatula]
          Length = 289

 Score =  221 bits (564), Expect = 8e-56
 Identities = 120/176 (68%), Positives = 126/176 (71%), Gaps = 1/176 (0%)
 Frame = -3

Query: 532 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXP-TTDRPLWFPGAKAPEYLDGS 356
           S F+GTRL+E   SNSGR QARFGFG              +TDRPLWFPGAK+PE+LDGS
Sbjct: 12  SSFIGTRLREVQ-SNSGRIQARFGFGKKKAAPKKPSRSSPSTDRPLWFPGAKSPEWLDGS 70

Query: 355 FVGDYGFDPFGLGKPAXXXXXXXXXXXXXXXXXXXXXXFGLGKPAEYLQFDLDSLDQNLA 176
            VGDYGFDPFGLG                             KPAEYLQFDLDSLDQNLA
Sbjct: 71  LVGDYGFDPFGLG-----------------------------KPAEYLQFDLDSLDQNLA 101

Query: 175 KNLAGDVIGTRSEDADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 8
           KNLAGDVIGTR+E ADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE
Sbjct: 102 KNLAGDVIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 157


>ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
           gi|223532494|gb|EEF34284.1| chlorophyll A/B binding
           protein, putative [Ricinus communis]
          Length = 285

 Score =  217 bits (553), Expect = 1e-54
 Identities = 116/175 (66%), Positives = 125/175 (71%)
 Frame = -3

Query: 532 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXPTTDRPLWFPGAKAPEYLDGSF 353
           S F+GTRL +   SNSGR QARFGFG             T+DRPLW+PGAKAPE+LDGS 
Sbjct: 11  SSFMGTRLPDV-YSNSGRVQARFGFGTKKSAPKRSAKP-TSDRPLWYPGAKAPEWLDGSL 68

Query: 352 VGDYGFDPFGLGKPAXXXXXXXXXXXXXXXXXXXXXXFGLGKPAEYLQFDLDSLDQNLAK 173
           VGDYGFDPFGLG                             KPAEYLQF+LDSLDQNLAK
Sbjct: 69  VGDYGFDPFGLG-----------------------------KPAEYLQFELDSLDQNLAK 99

Query: 172 NLAGDVIGTRSEDADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 8
           N+AGD+IGTR+E ADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE
Sbjct: 100 NIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 154


>ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
           gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa
           x Populus deltoides] gi|222855110|gb|EEE92657.1|
           light-harvesting complex II protein Lhcb4 [Populus
           trichocarpa]
          Length = 285

 Score =  217 bits (553), Expect = 1e-54
 Identities = 117/175 (66%), Positives = 124/175 (70%)
 Frame = -3

Query: 532 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXPTTDRPLWFPGAKAPEYLDGSF 353
           S F+GTRL +   SNSGR QARFGFG             T DRPLW+PGAKAPEYLDGS 
Sbjct: 11  SSFMGTRLPDI-YSNSGRIQARFGFGGKKAPKKSIKPS-TPDRPLWYPGAKAPEYLDGSL 68

Query: 352 VGDYGFDPFGLGKPAXXXXXXXXXXXXXXXXXXXXXXFGLGKPAEYLQFDLDSLDQNLAK 173
           VGDYGFDPFGLG                             KPAEYLQF+LDSLDQNLAK
Sbjct: 69  VGDYGFDPFGLG-----------------------------KPAEYLQFELDSLDQNLAK 99

Query: 172 NLAGDVIGTRSEDADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 8
           NLAGD+IGTR+E ADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAL+VE
Sbjct: 100 NLAGDIIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVE 154


>prf||1908421A light-harvesting complex IIa protein
          Length = 286

 Score =  215 bits (548), Expect = 6e-54
 Identities = 114/175 (65%), Positives = 123/175 (70%)
 Frame = -3

Query: 532 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXPTTDRPLWFPGAKAPEYLDGSF 353
           S FLGTRL +    N GR  ARFGFG            PTTDRPLWFPGA+APEYLDG+ 
Sbjct: 10  STFLGTRLADPRPQN-GRIVARFGFGKKKAPPKKAKAPPTTDRPLWFPGAQAPEYLDGTL 68

Query: 352 VGDYGFDPFGLGKPAXXXXXXXXXXXXXXXXXXXXXXFGLGKPAEYLQFDLDSLDQNLAK 173
           VGDYGFDPFGLG                             KPAEYLQ+D+DSLDQNLA+
Sbjct: 69  VGDYGFDPFGLG-----------------------------KPAEYLQYDVDSLDQNLAQ 99

Query: 172 NLAGDVIGTRSEDADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 8
           NLAG++IGTR EDADVKSTPFQPY+EVFGLQRFRECELIHGRWAMLATLGALTVE
Sbjct: 100 NLAGEIIGTRFEDADVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGALTVE 154