BLASTX nr result
ID: Coptis21_contig00003349
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00003349 (678 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago tr... 221 8e-56 gb|ACJ84724.1| unknown [Medicago truncatula] gi|388501002|gb|AFK... 221 8e-56 ref|XP_002528105.1| chlorophyll A/B binding protein, putative [R... 217 1e-54 ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [P... 217 1e-54 prf||1908421A light-harvesting complex IIa protein 215 6e-54 >ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula] gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula] Length = 347 Score = 221 bits (564), Expect = 8e-56 Identities = 120/176 (68%), Positives = 126/176 (71%), Gaps = 1/176 (0%) Frame = -3 Query: 532 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXP-TTDRPLWFPGAKAPEYLDGS 356 S F+GTRL+E SNSGR QARFGFG +TDRPLWFPGAK+PE+LDGS Sbjct: 70 SSFIGTRLREVQ-SNSGRIQARFGFGKKKAAPKKPSRSSPSTDRPLWFPGAKSPEWLDGS 128 Query: 355 FVGDYGFDPFGLGKPAXXXXXXXXXXXXXXXXXXXXXXFGLGKPAEYLQFDLDSLDQNLA 176 VGDYGFDPFGLG KPAEYLQFDLDSLDQNLA Sbjct: 129 LVGDYGFDPFGLG-----------------------------KPAEYLQFDLDSLDQNLA 159 Query: 175 KNLAGDVIGTRSEDADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 8 KNLAGDVIGTR+E ADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE Sbjct: 160 KNLAGDVIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 215 >gb|ACJ84724.1| unknown [Medicago truncatula] gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula] Length = 289 Score = 221 bits (564), Expect = 8e-56 Identities = 120/176 (68%), Positives = 126/176 (71%), Gaps = 1/176 (0%) Frame = -3 Query: 532 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXP-TTDRPLWFPGAKAPEYLDGS 356 S F+GTRL+E SNSGR QARFGFG +TDRPLWFPGAK+PE+LDGS Sbjct: 12 SSFIGTRLREVQ-SNSGRIQARFGFGKKKAAPKKPSRSSPSTDRPLWFPGAKSPEWLDGS 70 Query: 355 FVGDYGFDPFGLGKPAXXXXXXXXXXXXXXXXXXXXXXFGLGKPAEYLQFDLDSLDQNLA 176 VGDYGFDPFGLG KPAEYLQFDLDSLDQNLA Sbjct: 71 LVGDYGFDPFGLG-----------------------------KPAEYLQFDLDSLDQNLA 101 Query: 175 KNLAGDVIGTRSEDADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 8 KNLAGDVIGTR+E ADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE Sbjct: 102 KNLAGDVIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 157 >ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis] Length = 285 Score = 217 bits (553), Expect = 1e-54 Identities = 116/175 (66%), Positives = 125/175 (71%) Frame = -3 Query: 532 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXPTTDRPLWFPGAKAPEYLDGSF 353 S F+GTRL + SNSGR QARFGFG T+DRPLW+PGAKAPE+LDGS Sbjct: 11 SSFMGTRLPDV-YSNSGRVQARFGFGTKKSAPKRSAKP-TSDRPLWYPGAKAPEWLDGSL 68 Query: 352 VGDYGFDPFGLGKPAXXXXXXXXXXXXXXXXXXXXXXFGLGKPAEYLQFDLDSLDQNLAK 173 VGDYGFDPFGLG KPAEYLQF+LDSLDQNLAK Sbjct: 69 VGDYGFDPFGLG-----------------------------KPAEYLQFELDSLDQNLAK 99 Query: 172 NLAGDVIGTRSEDADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 8 N+AGD+IGTR+E ADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE Sbjct: 100 NIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 154 >ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa] gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides] gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa] Length = 285 Score = 217 bits (553), Expect = 1e-54 Identities = 117/175 (66%), Positives = 124/175 (70%) Frame = -3 Query: 532 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXPTTDRPLWFPGAKAPEYLDGSF 353 S F+GTRL + SNSGR QARFGFG T DRPLW+PGAKAPEYLDGS Sbjct: 11 SSFMGTRLPDI-YSNSGRIQARFGFGGKKAPKKSIKPS-TPDRPLWYPGAKAPEYLDGSL 68 Query: 352 VGDYGFDPFGLGKPAXXXXXXXXXXXXXXXXXXXXXXFGLGKPAEYLQFDLDSLDQNLAK 173 VGDYGFDPFGLG KPAEYLQF+LDSLDQNLAK Sbjct: 69 VGDYGFDPFGLG-----------------------------KPAEYLQFELDSLDQNLAK 99 Query: 172 NLAGDVIGTRSEDADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 8 NLAGD+IGTR+E ADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAL+VE Sbjct: 100 NLAGDIIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVE 154 >prf||1908421A light-harvesting complex IIa protein Length = 286 Score = 215 bits (548), Expect = 6e-54 Identities = 114/175 (65%), Positives = 123/175 (70%) Frame = -3 Query: 532 SLFLGTRLQETTISNSGRFQARFGFGXXXXXXXXXXXXPTTDRPLWFPGAKAPEYLDGSF 353 S FLGTRL + N GR ARFGFG PTTDRPLWFPGA+APEYLDG+ Sbjct: 10 STFLGTRLADPRPQN-GRIVARFGFGKKKAPPKKAKAPPTTDRPLWFPGAQAPEYLDGTL 68 Query: 352 VGDYGFDPFGLGKPAXXXXXXXXXXXXXXXXXXXXXXFGLGKPAEYLQFDLDSLDQNLAK 173 VGDYGFDPFGLG KPAEYLQ+D+DSLDQNLA+ Sbjct: 69 VGDYGFDPFGLG-----------------------------KPAEYLQYDVDSLDQNLAQ 99 Query: 172 NLAGDVIGTRSEDADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVE 8 NLAG++IGTR EDADVKSTPFQPY+EVFGLQRFRECELIHGRWAMLATLGALTVE Sbjct: 100 NLAGEIIGTRFEDADVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGALTVE 154