BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003239
         (1492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   187   1e-91
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...   181   6e-89
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   172   1e-83
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...   173   3e-82
ref|NP_564050.1| transcription initiation factor TFIIH subunit H...   173   5e-82

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score =  187 bits (475), Expect(2) = 1e-91
 Identities = 103/175 (58%), Positives = 116/175 (66%), Gaps = 4/175 (2%)
 Frame = +1

Query: 145 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIGSGVNSCNFIYDSSSPSSQ 324
           TNPFFW      L FS FLSHVLAF               I +G NSCNFI+DSSS  + 
Sbjct: 22  TNPFFWS--TASLPFSKFLSHVLAFLNSILLINQLNQVVVIATGCNSCNFIFDSSSVPAN 79

Query: 325 PVVIETRTTPALSSKLLLNLDEFLTTDQRLTEDKXXXXXXXXXXXXXX----CYIQRVFR 492
           P  +E    PAL S LL  L+EF+T D++L+++                   CYIQRVFR
Sbjct: 80  PN-LENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMALCYIQRVFR 138

Query: 493 SGSLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCVIGAQHSAFLQQ 657
           +G LHPQPRILCLQGSPDGPEQYVAVMN+IFSAQRSMVPIDSCVIGAQHSAFLQQ
Sbjct: 139 TGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQ 193



 Score =  177 bits (450), Expect(2) = 1e-91
 Identities = 82/96 (85%), Positives = 85/96 (88%)
 Frame = +3

Query: 729  TGGVYLKPQHLDGLFQYLSTVFATDLLSRNILELPKPAGVDFRASCFCHKKTIDMGYICS 908
            TGGVYLKPQ LDGLFQYLSTVFATDL SR  L+LPKPAGVDFRASCFCHK TIDMGYICS
Sbjct: 198  TGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRASCFCHKNTIDMGYICS 257

Query: 909  VCLSIFCKHHKKCSTCGSVFGEAHPEATSTPDRKRK 1016
            VCLSIFCKHHKKCSTCGSVFG+A  +  S  DRKRK
Sbjct: 258  VCLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRK 293


>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
           predicted protein [Populus trichocarpa]
          Length = 289

 Score =  181 bits (460), Expect(2) = 6e-89
 Identities = 100/175 (57%), Positives = 118/175 (67%), Gaps = 4/175 (2%)
 Frame = +1

Query: 145 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIGSGVNSCNFIYDSSSPSSQ 324
           TNPFFW  P++ LSFS FLSHVLAF               I SG N+C++IYDSSS +SQ
Sbjct: 13  TNPFFWTPPSS-LSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCDYIYDSSSDASQ 71

Query: 325 PVVIETRTTPALSSKLLLNLDEFLTTDQRLTEDKXXXXXXXXXXXXXX----CYIQRVFR 492
            +  E    P+L S LL  L+EF+  D++L +++                  CYIQRVFR
Sbjct: 72  -LGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSMALCYIQRVFR 130

Query: 493 SGSLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCVIGAQHSAFLQQ 657
           SG LHPQPRILCLQGSPDGPEQYVAVMN+IFSAQRSMVPIDSC +GA +SAFLQQ
Sbjct: 131 SGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNSAFLQQ 185



 Score =  174 bits (441), Expect(2) = 6e-89
 Identities = 78/96 (81%), Positives = 87/96 (90%)
 Frame = +3

Query: 729  TGGVYLKPQHLDGLFQYLSTVFATDLLSRNILELPKPAGVDFRASCFCHKKTIDMGYICS 908
            TGGVY+KPQHLDGLFQYL+TVFATDL SR+ ++LP+PAGVDFRASCFCHK TIDMGYICS
Sbjct: 190  TGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKTTIDMGYICS 249

Query: 909  VCLSIFCKHHKKCSTCGSVFGEAHPEATSTPDRKRK 1016
            VCLSIFC HHKKCSTCGSVFG+A  + +ST D KRK
Sbjct: 250  VCLSIFCNHHKKCSTCGSVFGQAQSDTSSTSDLKRK 285


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 295

 Score =  172 bits (436), Expect(2) = 1e-83
 Identities = 97/175 (55%), Positives = 114/175 (65%), Gaps = 4/175 (2%)
 Frame = +1

Query: 145 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIGSGVNSCNFIYDSSSPSSQ 324
           TNPFFW    + L FS FLSHVLAF               IG+G  SC ++Y+SSS S+ 
Sbjct: 22  TNPFFWS--TSALPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNH 79

Query: 325 PVVIETRTTPALSSKLLLNLDEFLTTD-QRLTEDKXXXXXXXXXXXXXX---CYIQRVFR 492
              +E    PAL ++LL NL+EF+  D Q + ED                  CYIQ+VFR
Sbjct: 80  G--LEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFR 137

Query: 493 SGSLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCVIGAQHSAFLQQ 657
           SGSLHPQPRILCLQGSPDGPEQYVA+MN+IFSAQRSMVPIDSC IG+ +SAFLQQ
Sbjct: 138 SGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQ 192



 Score =  166 bits (419), Expect(2) = 1e-83
 Identities = 77/96 (80%), Positives = 80/96 (83%)
 Frame = +3

Query: 729  TGGVYLKPQHLDGLFQYLSTVFATDLLSRNILELPKPAGVDFRASCFCHKKTIDMGYICS 908
            TGGVYLKPQ +DGLFQYLSTVF TDL SR  L+LPK  GVDFRASCFCHKKTIDMGY+CS
Sbjct: 197  TGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCS 256

Query: 909  VCLSIFCKHHKKCSTCGSVFGEAHPEATSTPDRKRK 1016
            VCLSIFCKHHKKCSTCGSVFGE   E  S    KRK
Sbjct: 257  VCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRK 292


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
           lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
           ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score =  173 bits (439), Expect(2) = 3e-82
 Identities = 97/177 (54%), Positives = 112/177 (63%), Gaps = 6/177 (3%)
 Frame = +1

Query: 145 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIGSGVNSCNFIYDSSSPSSQ 324
           TNP FW    T ++FS FLSHVLAF               I +G +SC++IYDSS  S+ 
Sbjct: 22  TNPLFWS--TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLTSNH 79

Query: 325 PVVIETRT-TPALSSKLLLNLDEFLTTDQRLT-----EDKXXXXXXXXXXXXXXCYIQRV 486
             +    T  PAL   LL  L++F+T D+ L+     ED+              CYIQRV
Sbjct: 80  GNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRIPSCLLSGSLSMALCYIQRV 139

Query: 487 FRSGSLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCVIGAQHSAFLQQ 657
           FRSG LHPQPRILCLQGSPDGPEQYVAVMNSIFSAQR MVPIDSC IG Q+SAFLQQ
Sbjct: 140 FRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQ 196



 Score =  160 bits (404), Expect(2) = 3e-82
 Identities = 73/97 (75%), Positives = 86/97 (88%), Gaps = 1/97 (1%)
 Frame = +3

Query: 729  TGGVYLKPQHLDGLFQYLSTVFATDLLSRNILELPKPAGVDFRASCFCHKKTIDMGYICS 908
            TGGV+  P+ LDGLFQYL+T+FATDL SR+ ++LPKP GVDFRASCFCHKKTIDMGYICS
Sbjct: 201  TGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPIGVDFRASCFCHKKTIDMGYICS 260

Query: 909  VCLSIFCKHHKKCSTCGSVFGEAH-PEATSTPDRKRK 1016
            VCLSIFC+HHKKCSTCGSVFG++   +A+S  D+KRK
Sbjct: 261  VCLSIFCEHHKKCSTCGSVFGQSKLDDASSVSDKKRK 297


>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
           thaliana] gi|21537277|gb|AAM61618.1| unknown
           [Arabidopsis thaliana] gi|92856638|gb|ABE77412.1|
           At1g18340 [Arabidopsis thaliana]
           gi|332191584|gb|AEE29705.1| transcription initiation
           factor TFIIH subunit H3 [Arabidopsis thaliana]
          Length = 301

 Score =  173 bits (438), Expect(2) = 5e-82
 Identities = 97/177 (54%), Positives = 111/177 (62%), Gaps = 6/177 (3%)
 Frame = +1

Query: 145 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIGSGVNSCNFIYDSSSPSSQ 324
           TNP FW    T ++FS FLSHVLAF               I +G +SC++IYDSS  S+ 
Sbjct: 22  TNPLFWS--TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLTSNH 79

Query: 325 PVVIETRT-TPALSSKLLLNLDEFLTTDQRLT-----EDKXXXXXXXXXXXXXXCYIQRV 486
                  T  PA+   LL  L+EF+T D+ L+     ED+              CYIQRV
Sbjct: 80  GNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALCYIQRV 139

Query: 487 FRSGSLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCVIGAQHSAFLQQ 657
           FRSG LHPQPRILCLQGSPDGPEQYVAVMNSIFSAQR MVPIDSC IG Q+SAFLQQ
Sbjct: 140 FRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQ 196



 Score =  159 bits (403), Expect(2) = 5e-82
 Identities = 73/97 (75%), Positives = 85/97 (87%), Gaps = 1/97 (1%)
 Frame = +3

Query: 729  TGGVYLKPQHLDGLFQYLSTVFATDLLSRNILELPKPAGVDFRASCFCHKKTIDMGYICS 908
            TGGV+  P+ LDGLFQYL+T+FATDL SR  ++LPKP GVDFRASCFCHKKTIDMGYICS
Sbjct: 201  TGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMGYICS 260

Query: 909  VCLSIFCKHHKKCSTCGSVFGEAH-PEATSTPDRKRK 1016
            VCLSIFC+HHKKCSTCGSVFG++   +A+S  D+KRK
Sbjct: 261  VCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRK 297