BLASTX nr result
ID: Coptis21_contig00003150
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00003150 (209 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002275541.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis... 80 2e-13 ref|XP_002279950.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis... 79 3e-13 ref|XP_003548260.1| PREDICTED: 40S ribosomal protein S3-3-like [... 77 2e-12 ref|XP_002308530.1| predicted protein [Populus trichocarpa] gi|1... 76 2e-12 ref|XP_003548259.1| PREDICTED: 40S ribosomal protein S3-3-like [... 76 3e-12 >ref|XP_002275541.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera] gi|297743020|emb|CBI35887.3| unnamed protein product [Vitis vinifera] Length = 234 Score = 80.1 bits (196), Expect = 2e-13 Identities = 35/45 (77%), Positives = 40/45 (88%) Frame = +3 Query: 3 LDWDPKGKQGPMTPLPDLVTIHMPKDEEEYVRPALMATEIDVAAA 137 LDWDPKGKQGP TPLPDLVTIH PK+EEEY+RP + A +I+VAAA Sbjct: 190 LDWDPKGKQGPKTPLPDLVTIHTPKEEEEYLRPPIPAADIEVAAA 234 >ref|XP_002279950.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera] gi|297738588|emb|CBI27833.3| unnamed protein product [Vitis vinifera] Length = 234 Score = 79.3 bits (194), Expect = 3e-13 Identities = 34/45 (75%), Positives = 39/45 (86%) Frame = +3 Query: 3 LDWDPKGKQGPMTPLPDLVTIHMPKDEEEYVRPALMATEIDVAAA 137 LDWDPKGKQGP TPLPDLVTIH PK+EEEY+RP +AT+I+V A Sbjct: 190 LDWDPKGKQGPKTPLPDLVTIHTPKEEEEYIRPEKLATDIEVPTA 234 >ref|XP_003548260.1| PREDICTED: 40S ribosomal protein S3-3-like [Glycine max] Length = 235 Score = 76.6 bits (187), Expect = 2e-12 Identities = 35/46 (76%), Positives = 40/46 (86%), Gaps = 1/46 (2%) Frame = +3 Query: 3 LDWDPKGKQGPMTPLPDLVTIHMPKDEEEYVRP-ALMATEIDVAAA 137 LDWDPKGKQGP TPLPDLVTIH PK+EEEY RP A++AT+I+V A Sbjct: 190 LDWDPKGKQGPKTPLPDLVTIHTPKEEEEYARPAAVLATDIEVPVA 235 >ref|XP_002308530.1| predicted protein [Populus trichocarpa] gi|118483836|gb|ABK93809.1| unknown [Populus trichocarpa] gi|118485378|gb|ABK94546.1| unknown [Populus trichocarpa] gi|222854506|gb|EEE92053.1| predicted protein [Populus trichocarpa] Length = 236 Score = 76.3 bits (186), Expect = 2e-12 Identities = 33/45 (73%), Positives = 37/45 (82%) Frame = +3 Query: 3 LDWDPKGKQGPMTPLPDLVTIHMPKDEEEYVRPALMATEIDVAAA 137 LDWDPKGK GPMTPLPDLVTIH PK+EEEYV P +M T I++ A Sbjct: 190 LDWDPKGKVGPMTPLPDLVTIHPPKEEEEYVAPPVMTTNIEIPVA 234 >ref|XP_003548259.1| PREDICTED: 40S ribosomal protein S3-3-like [Glycine max] Length = 236 Score = 75.9 bits (185), Expect = 3e-12 Identities = 35/46 (76%), Positives = 39/46 (84%), Gaps = 1/46 (2%) Frame = +3 Query: 3 LDWDPKGKQGPMTPLPDLVTIHMPKDEEEYVRP-ALMATEIDVAAA 137 LDWDPKGKQGP TPLPDLVTIH PK+EEEY RP A++AT I+V A Sbjct: 190 LDWDPKGKQGPKTPLPDLVTIHTPKEEEEYARPAAVLATNIEVPVA 235