BLASTX nr result

ID: Coptis21_contig00003116 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003116
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265303.2| PREDICTED: uncharacterized protein LOC100266...   120   1e-25
ref|XP_003534858.1| PREDICTED: uncharacterized protein LOC100797...    96   4e-18
ref|XP_004158679.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...    94   1e-17
ref|XP_004134515.1| PREDICTED: uncharacterized protein LOC101220...    94   1e-17
ref|XP_002530123.1| hypothetical protein RCOM_0128070 [Ricinus c...    93   2e-17

>ref|XP_002265303.2| PREDICTED: uncharacterized protein LOC100266712 [Vitis vinifera]
           gi|297738186|emb|CBI27387.3| unnamed protein product
           [Vitis vinifera]
          Length = 509

 Score =  120 bits (300), Expect = 1e-25
 Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
 Frame = +3

Query: 12  VFGTNRGAAMLNLETGAVSWLCHSKSDVFSLQFNESGNVMLCGFRNGGIVTVDVRQKQQG 191
           V GTN G A++N+ET   SW+C +KSDV SLQ ++SGNV+LCG RNG +VTVDVR+KQ+G
Sbjct: 271 VIGTNVGVALVNMETRVPSWVCRTKSDVLSLQLDQSGNVVLCGLRNGAVVTVDVREKQEG 330

Query: 192 TMV--SRHRIPFSLNTDHEDSSRNAQKRTKAWFEVKGSIHP 308
                +RHR+P+  +   E SSR  QK +K WFE+KG I+P
Sbjct: 331 AYARHTRHRVPYPSHRISEASSRTVQKFSKQWFELKGKIYP 371


>ref|XP_003534858.1| PREDICTED: uncharacterized protein LOC100797740, partial [Glycine
           max]
          Length = 510

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 49/102 (48%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
 Frame = +3

Query: 12  VFGTNRGAAMLNLETGAVSWLCHSKSDVFSLQFNESGNVMLCGFRNGGIVTVDVRQKQQ- 188
           V GTN GAA ++LETG +SW  H KSDVF+ Q   SGNV+LCG RNG IVTVD R++++ 
Sbjct: 282 VIGTNLGAASVDLETGTMSWFLHCKSDVFAQQIVNSGNVILCGLRNGAIVTVDSRERRES 341

Query: 189 --GTMVSRHRIPFSLNTDHEDSSRNAQKRTKAWFEVKGSIHP 308
             G +++ HRIP++       S +      K WF++KG I+P
Sbjct: 342 LSGRLIT-HRIPYA------SSDKKVVGSNKEWFKLKGDIYP 376


>ref|XP_004158679.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
           LOC101230256 [Cucumis sativus]
          Length = 515

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 47/100 (47%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
 Frame = +3

Query: 12  VFGTNRGAAMLNLETGAVSWLCHSKSDVFSLQFNESGNVMLCGFRNGGIVTVDVRQKQQ- 188
           V GTN GAA +++ TG +SW+ H KSD+F+LQ   S NV+LCG RNG IVT+D R++Q+ 
Sbjct: 277 VIGTNIGAASVDMGTGRISWILHGKSDIFALQLIHSENVVLCGLRNGMIVTIDTRERQEV 336

Query: 189 GTMVSRHRIPFSLNTDHEDSSRNAQKRTKAWFEVKGSIHP 308
           G  + RHRIP+ L  D     RN++  ++ W+++ G+I P
Sbjct: 337 GKRLLRHRIPY-LPIDR----RNSRTSSQQWYKLTGNIXP 371


>ref|XP_004134515.1| PREDICTED: uncharacterized protein LOC101220880 [Cucumis sativus]
          Length = 515

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 47/100 (47%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
 Frame = +3

Query: 12  VFGTNRGAAMLNLETGAVSWLCHSKSDVFSLQFNESGNVMLCGFRNGGIVTVDVRQKQQ- 188
           V GTN GAA +++ TG +SW+ H KSD+F+LQ   S NV+LCG RNG IVT+D R++Q+ 
Sbjct: 277 VIGTNIGAASVDMGTGRISWILHGKSDIFALQLIHSENVVLCGLRNGMIVTIDTRERQEV 336

Query: 189 GTMVSRHRIPFSLNTDHEDSSRNAQKRTKAWFEVKGSIHP 308
           G  + RHRIP+ L  D     RN++  ++ W+++ G+I P
Sbjct: 337 GKRLLRHRIPY-LPIDR----RNSRTSSQQWYKLTGNIFP 371


>ref|XP_002530123.1| hypothetical protein RCOM_0128070 [Ricinus communis]
           gi|223530377|gb|EEF32267.1| hypothetical protein
           RCOM_0128070 [Ricinus communis]
          Length = 407

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 48/96 (50%), Positives = 64/96 (66%)
 Frame = +3

Query: 21  TNRGAAMLNLETGAVSWLCHSKSDVFSLQFNESGNVMLCGFRNGGIVTVDVRQKQQGTMV 200
           T+ GAA++NLETG  +W+  SKSDV + Q ++SGNV+LCG RNG IVTVDVR+     + 
Sbjct: 176 TDLGAALVNLETGTATWVLRSKSDVLAQQLDQSGNVVLCGLRNGAIVTVDVREGSAREI- 234

Query: 201 SRHRIPFSLNTDHEDSSRNAQKRTKAWFEVKGSIHP 308
            RHRIP+SL        R+ Q  +K WF++ G I P
Sbjct: 235 -RHRIPYSL------LGRSRQNSSKQWFKLSGYIDP 263


Top