BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003082
         (409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16283.3| unnamed protein product [Vitis vinifera]              207   9e-52
ref|XP_002284994.1| PREDICTED: general transcription factor IIH ...   207   9e-52
ref|XP_003624959.1| General transcription factor IIH subunit [Me...   202   2e-50
ref|NP_001142175.1| uncharacterized protein LOC100274342 [Zea ma...   199   2e-49
ref|XP_004143721.1| PREDICTED: general transcription factor IIH ...   198   4e-49

>emb|CBI16283.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  207 bits (526), Expect = 9e-52
 Identities = 98/136 (72%), Positives = 112/136 (82%)
 Frame = +1

Query: 1   EEGNENDMEAWERAYADERSWESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXX 180
           +EGN   ++AWERAYADERSWESLQEDESGLLRPID  +++HAQY               
Sbjct: 90  DEGNGRGLDAWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTAR 149

Query: 181 IQKGLIRYLYIVIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLVSIKDG 360
           IQKGLIRYLYIV+D SRAA+EMDF+PSRM VVAKH+EAFIREFFDQNPLS +GLV+IKDG
Sbjct: 150 IQKGLIRYLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDG 209

Query: 361 VAHCLTDLGGSPDSHI 408
           +A CLTDLGGSPDSH+
Sbjct: 210 LAQCLTDLGGSPDSHV 225


>ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
           vinifera]
          Length = 433

 Score =  207 bits (526), Expect = 9e-52
 Identities = 98/136 (72%), Positives = 112/136 (82%)
 Frame = +1

Query: 1   EEGNENDMEAWERAYADERSWESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXX 180
           +EGN   ++AWERAYADERSWESLQEDESGLLRPID  +++HAQY               
Sbjct: 29  DEGNGRGLDAWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTAR 88

Query: 181 IQKGLIRYLYIVIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLVSIKDG 360
           IQKGLIRYLYIV+D SRAA+EMDF+PSRM VVAKH+EAFIREFFDQNPLS +GLV+IKDG
Sbjct: 89  IQKGLIRYLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDG 148

Query: 361 VAHCLTDLGGSPDSHI 408
           +A CLTDLGGSPDSH+
Sbjct: 149 LAQCLTDLGGSPDSHV 164


>ref|XP_003624959.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355499974|gb|AES81177.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 426

 Score =  202 bits (514), Expect = 2e-50
 Identities = 96/136 (70%), Positives = 111/136 (81%)
 Frame = +1

Query: 1   EEGNENDMEAWERAYADERSWESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXX 180
           +E N++ +EAWERAY ++RSWESLQEDESGLLRPIDT ++HHAQY               
Sbjct: 19  DEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAATAR 78

Query: 181 IQKGLIRYLYIVIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLVSIKDG 360
           IQKGLIRYLYIV+D S+AA+E DFRPSRM V+AK VE FIREFFDQNPLSHVGLV+ KDG
Sbjct: 79  IQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDG 138

Query: 361 VAHCLTDLGGSPDSHI 408
           VA+CLTDLGGSP+SHI
Sbjct: 139 VANCLTDLGGSPESHI 154


>ref|NP_001142175.1| uncharacterized protein LOC100274342 [Zea mays]
           gi|194707472|gb|ACF87820.1| unknown [Zea mays]
           gi|414586431|tpg|DAA37002.1| TPA: hypothetical protein
           ZEAMMB73_625811 [Zea mays]
          Length = 428

 Score =  199 bits (506), Expect = 2e-49
 Identities = 99/136 (72%), Positives = 109/136 (80%)
 Frame = +1

Query: 1   EEGNENDMEAWERAYADERSWESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXX 180
           E G    +EAWERAYADERSWESLQEDESGLLRP+DT +L HAQY               
Sbjct: 31  EGGEGRVLEAWERAYADERSWESLQEDESGLLRPVDTKTLVHAQYRRRLLLRSAAAAAAR 90

Query: 181 IQKGLIRYLYIVIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLVSIKDG 360
           IQKGLIRYLYIVID SRAA+EMD+RPSRM VVAKH EAFIREFFDQNPLSHVGLV+IKDG
Sbjct: 91  IQKGLIRYLYIVIDLSRAASEMDYRPSRMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDG 150

Query: 361 VAHCLTDLGGSPDSHI 408
           +AH LT++GGSP+S I
Sbjct: 151 IAHRLTEIGGSPESQI 166


>ref|XP_004143721.1| PREDICTED: general transcription factor IIH subunit 2-like [Cucumis
           sativus]
          Length = 423

 Score =  198 bits (503), Expect = 4e-49
 Identities = 93/136 (68%), Positives = 110/136 (80%)
 Frame = +1

Query: 1   EEGNENDMEAWERAYADERSWESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXX 180
           ++ + N + AWER YAD+RSWE+LQEDESGLLRPID  +++HAQY               
Sbjct: 18  DDDDANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTAR 77

Query: 181 IQKGLIRYLYIVIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLVSIKDG 360
           IQKGLIRYLYIVIDFS+AA EMDFRPSRM VVAKHV+AF+REFFDQNPLS +GLV+IKDG
Sbjct: 78  IQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDG 137

Query: 361 VAHCLTDLGGSPDSHI 408
            A+CLTDLGGSP+SH+
Sbjct: 138 FANCLTDLGGSPESHV 153