BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003081
         (1104 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16283.3| unnamed protein product [Vitis vinifera]              468   e-129
ref|XP_002284994.1| PREDICTED: general transcription factor IIH ...   468   e-129
ref|XP_002331276.1| predicted protein [Populus trichocarpa] gi|2...   437   e-120
ref|XP_004169706.1| PREDICTED: general transcription factor IIH ...   429   e-118
ref|XP_004143721.1| PREDICTED: general transcription factor IIH ...   429   e-118

>emb|CBI16283.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  468 bits (1204), Expect = e-129
 Identities = 220/272 (80%), Positives = 241/272 (88%), Gaps = 1/272 (0%)
 Frame = -1

Query: 1104 GSPDSHIKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDVM 925
            GSPDSH+KALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD+M
Sbjct: 219  GSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDIM 278

Query: 924  ETIQKCKISRIRCSVVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXXXX 745
            ETIQ+CK S+IRCSV+GLSAEI+IC+HLCQETGGSY+VALDE HFK              
Sbjct: 279  ETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIA 338

Query: 744  EFAVSNLIKMGFPQRAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLTLV 568
            EFA++NLIKMGFPQRAAEGVISIC+CHKEAKV GGYTCPRCKARVCELPTEC+ICGLTLV
Sbjct: 339  EFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLV 398

Query: 567  SSPHLARSYHHLFPITPFKEVSSTTLNDPHIKLQRSCFGCQQTLPLPGKKPSLRVACPKC 388
            SSPHLARSYHHLFPI PF EVS + LN+PH +  R+CFGCQ++L +PG KP+L VACPKC
Sbjct: 399  SSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKC 458

Query: 387  NQHFCLECDIYIHESLHNCPGCESLGHSKPVS 292
             QHFCL+CDIYIHESLHNCPGCES  HSK VS
Sbjct: 459  KQHFCLDCDIYIHESLHNCPGCESFRHSKIVS 490


>ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
            vinifera]
          Length = 433

 Score =  468 bits (1204), Expect = e-129
 Identities = 220/272 (80%), Positives = 241/272 (88%), Gaps = 1/272 (0%)
 Frame = -1

Query: 1104 GSPDSHIKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDVM 925
            GSPDSH+KALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD+M
Sbjct: 158  GSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDIM 217

Query: 924  ETIQKCKISRIRCSVVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXXXX 745
            ETIQ+CK S+IRCSV+GLSAEI+IC+HLCQETGGSY+VALDE HFK              
Sbjct: 218  ETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIA 277

Query: 744  EFAVSNLIKMGFPQRAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLTLV 568
            EFA++NLIKMGFPQRAAEGVISIC+CHKEAKV GGYTCPRCKARVCELPTEC+ICGLTLV
Sbjct: 278  EFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLV 337

Query: 567  SSPHLARSYHHLFPITPFKEVSSTTLNDPHIKLQRSCFGCQQTLPLPGKKPSLRVACPKC 388
            SSPHLARSYHHLFPI PF EVS + LN+PH +  R+CFGCQ++L +PG KP+L VACPKC
Sbjct: 338  SSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKC 397

Query: 387  NQHFCLECDIYIHESLHNCPGCESLGHSKPVS 292
             QHFCL+CDIYIHESLHNCPGCES  HSK VS
Sbjct: 398  KQHFCLDCDIYIHESLHNCPGCESFRHSKIVS 429


>ref|XP_002331276.1| predicted protein [Populus trichocarpa] gi|222873701|gb|EEF10832.1|
            predicted protein [Populus trichocarpa]
          Length = 412

 Score =  437 bits (1123), Expect = e-120
 Identities = 204/265 (76%), Positives = 231/265 (87%), Gaps = 1/265 (0%)
 Frame = -1

Query: 1104 GSPDSHIKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDVM 925
            GSP+SHIKALM KLECSGDSSLQNAL+LVH YL++IPSYG+REVLILYSAL+TCDPGD+M
Sbjct: 145  GSPESHIKALMAKLECSGDSSLQNALELVHEYLDKIPSYGNREVLILYSALTTCDPGDIM 204

Query: 924  ETIQKCKISRIRCSVVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXXXX 745
            ETIQKCK S++RCSV+GLSAE++ICKHLCQETGG Y+VALDE HFK              
Sbjct: 205  ETIQKCKKSKMRCSVIGLSAEMFICKHLCQETGGLYSVALDESHFKELILEHAPPPPAIA 264

Query: 744  EFAVSNLIKMGFPQRAAEGVISICACHKEAKVG-GYTCPRCKARVCELPTECQICGLTLV 568
            EFA++NLIKMGFPQRAAEG ISIC+CHKE+KVG GY CPRCKARVCELPTEC+ICGLTLV
Sbjct: 265  EFAIANLIKMGFPQRAAEGSISICSCHKESKVGEGYICPRCKARVCELPTECRICGLTLV 324

Query: 567  SSPHLARSYHHLFPITPFKEVSSTTLNDPHIKLQRSCFGCQQTLPLPGKKPSLRVACPKC 388
            SSPHLARSYHHLFPI PF EV  +  N+PH + Q++CFGCQQ+L  PG KPSL+VACPKC
Sbjct: 325  SSPHLARSYHHLFPIAPFDEVKPSRQNEPHRRSQKTCFGCQQSLVNPGNKPSLQVACPKC 384

Query: 387  NQHFCLECDIYIHESLHNCPGCESL 313
             Q+FCL+CDIYIHESLHNCPGCESL
Sbjct: 385  KQYFCLDCDIYIHESLHNCPGCESL 409


>ref|XP_004169706.1| PREDICTED: general transcription factor IIH subunit 2-like, partial
            [Cucumis sativus]
          Length = 329

 Score =  429 bits (1104), Expect = e-118
 Identities = 198/271 (73%), Positives = 227/271 (83%), Gaps = 3/271 (1%)
 Frame = -1

Query: 1104 GSPDSHIKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDVM 925
            GSP+SH+KALMGKLECSGD+SLQN L+LVH YLNQIPSYGHREVL+LYSAL++CDPGD+M
Sbjct: 53   GSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDIM 112

Query: 924  ETIQKCKISRIRCSVVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXXXX 745
            ET+QKCK S+IRCSV+GL+AEI+IC+HLCQETGGSY+VALDE HFK              
Sbjct: 113  ETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIA 172

Query: 744  EFAVSNLIKMGFPQRAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLTLV 568
            + A+ NLIKMGFPQRAAE  I+IC+CHKEAKV GGYTCPRCKARVCELPTEC+ICGLTL+
Sbjct: 173  DSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLI 232

Query: 567  SSPHLARSYHHLFPITPFKEVSSTTLNDPHIKLQRSCFGCQQTL--PLPGKKPSLRVACP 394
            SSPHLARSYHHLFPI PF EVS    +DP  +L + CFGCQ++L  P  G  PS+RV+CP
Sbjct: 233  SSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPSTGNSPSIRVSCP 292

Query: 393  KCNQHFCLECDIYIHESLHNCPGCESLGHSK 301
            KC QHFCL+CDIYIHESLHNCPGCES    K
Sbjct: 293  KCKQHFCLDCDIYIHESLHNCPGCESFRRPK 323


>ref|XP_004143721.1| PREDICTED: general transcription factor IIH subunit 2-like [Cucumis
            sativus]
          Length = 423

 Score =  429 bits (1104), Expect = e-118
 Identities = 198/271 (73%), Positives = 227/271 (83%), Gaps = 3/271 (1%)
 Frame = -1

Query: 1104 GSPDSHIKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDVM 925
            GSP+SH+KALMGKLECSGD+SLQN L+LVH YLNQIPSYGHREVL+LYSAL++CDPGD+M
Sbjct: 147  GSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDIM 206

Query: 924  ETIQKCKISRIRCSVVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXXXX 745
            ET+QKCK S+IRCSV+GL+AEI+IC+HLCQETGGSY+VALDE HFK              
Sbjct: 207  ETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIA 266

Query: 744  EFAVSNLIKMGFPQRAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLTLV 568
            + A+ NLIKMGFPQRAAE  I+IC+CHKEAKV GGYTCPRCKARVCELPTEC+ICGLTL+
Sbjct: 267  DSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLI 326

Query: 567  SSPHLARSYHHLFPITPFKEVSSTTLNDPHIKLQRSCFGCQQTL--PLPGKKPSLRVACP 394
            SSPHLARSYHHLFPI PF EVS    +DP  +L + CFGCQ++L  P  G  PS+RV+CP
Sbjct: 327  SSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPSTGNSPSIRVSCP 386

Query: 393  KCNQHFCLECDIYIHESLHNCPGCESLGHSK 301
            KC QHFCL+CDIYIHESLHNCPGCES    K
Sbjct: 387  KCKQHFCLDCDIYIHESLHNCPGCESFRRPK 417