BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003055
         (931 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004167072.1| PREDICTED: pentatricopeptide repeat-containi...   442   e-122
ref|XP_004147297.1| PREDICTED: pentatricopeptide repeat-containi...   441   e-121
ref|XP_002324476.1| predicted protein [Populus trichocarpa] gi|2...   439   e-121
ref|XP_003606459.1| Pentatricopeptide repeat-containing protein ...   432   e-119
ref|XP_003540749.1| PREDICTED: pentatricopeptide repeat-containi...   389   e-106

>ref|XP_004167072.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
            mitochondrial-like [Cucumis sativus]
          Length = 428

 Score =  442 bits (1138), Expect = e-122
 Identities = 212/302 (70%), Positives = 258/302 (85%), Gaps = 1/302 (0%)
 Frame = -2

Query: 930  LYKMLNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKLGSAELYEEMDGVVNQVLAV 751
            L  +++L  D LVC ELFN+ASQQPRFRHD S+Y +TIKKLG A++YEEMD VVNQ LAV
Sbjct: 123  LCNVISLQRDPLVCFELFNWASQQPRFRHDDSSYEITIKKLGEAKMYEEMDHVVNQALAV 182

Query: 750  PAIGSEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDEGCRPSIRTYNLLFTSFLSKRSN 571
             +IGSE L+NT+IYF+TEARKL++A++++KHM+ + +  CRPSIRTYNLLFT+FLS+  N
Sbjct: 183  SSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRN 242

Query: 570  TYINHLYMETIRSLFKQMVND-GIEPDIFSMNSVIKGYVLSLHVNDALRVFHQMGVVYSC 394
            TYINH+YMETIR LF+QMVND GIEPDIFS+N +IKGYVLSLHVNDALR+FHQMGVVYSC
Sbjct: 243  TYINHMYMETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLHVNDALRIFHQMGVVYSC 302

Query: 393  HPDSHSYSYIIHGLCCQGRTNNAKELYAEMKSKGFVPSGKAYNSLANSLAIIGEVEEAVR 214
             P+S+SY Y+IHGLC Q RT+NAKEL  EMK KGFVPS  +YNS+ N+LA+ GEVE+AV 
Sbjct: 303  LPNSYSYDYLIHGLCAQARTDNAKELCNEMKEKGFVPSSISYNSIVNALALNGEVEDAVN 362

Query: 213  LLWEMNEKRKSADFITYRTVLDEICRQGKIGEAIRLLKEFQEKDLVDGFTYNKLLYVIED 34
             LWEM + R+S DFITY+TVLDE+CRQGK+ EA  LL+E QEKDLVDG TY KLLYV+ED
Sbjct: 363  YLWEMIDNRRSPDFITYKTVLDELCRQGKVVEATSLLRELQEKDLVDGHTYRKLLYVLED 422

Query: 33   EF 28
            ++
Sbjct: 423  DY 424


>ref|XP_004147297.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
            mitochondrial-like [Cucumis sativus]
          Length = 428

 Score =  441 bits (1134), Expect = e-121
 Identities = 211/302 (69%), Positives = 258/302 (85%), Gaps = 1/302 (0%)
 Frame = -2

Query: 930  LYKMLNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKLGSAELYEEMDGVVNQVLAV 751
            L  +++L  D LVC ELFN+ASQQPRFRHD S+Y +TIKKLG A++YEEMD VVNQ LAV
Sbjct: 123  LCNVISLQRDPLVCFELFNWASQQPRFRHDDSSYEITIKKLGEAKMYEEMDHVVNQALAV 182

Query: 750  PAIGSEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDEGCRPSIRTYNLLFTSFLSKRSN 571
             +IGSE L+NT+IYF+TEARKL++A++++KHM+ + +  CRPSIRTYNLLFT+FLS+  N
Sbjct: 183  SSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRN 242

Query: 570  TYINHLYMETIRSLFKQMVND-GIEPDIFSMNSVIKGYVLSLHVNDALRVFHQMGVVYSC 394
            TYINH+YMETIR LF+QMVND GIEPDIFS+N +IKGYVLSLHVNDALR+FHQMGVVYSC
Sbjct: 243  TYINHMYMETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLHVNDALRIFHQMGVVYSC 302

Query: 393  HPDSHSYSYIIHGLCCQGRTNNAKELYAEMKSKGFVPSGKAYNSLANSLAIIGEVEEAVR 214
             P+S+S+ Y+IHGLC Q RT+NAKEL  EMK KGFVPS  +YNS+ N+LA+ GEVE+AV 
Sbjct: 303  LPNSYSFDYLIHGLCAQARTDNAKELCNEMKEKGFVPSSISYNSIVNALALNGEVEDAVN 362

Query: 213  LLWEMNEKRKSADFITYRTVLDEICRQGKIGEAIRLLKEFQEKDLVDGFTYNKLLYVIED 34
             LWEM + R+S DFITY+TVLDE+CRQGK+ EA  LL+E QEKDLVDG TY KLLYV+ED
Sbjct: 363  YLWEMIDNRRSPDFITYKTVLDELCRQGKVVEATSLLRELQEKDLVDGHTYRKLLYVLED 422

Query: 33   EF 28
            ++
Sbjct: 423  DY 424


>ref|XP_002324476.1| predicted protein [Populus trichocarpa] gi|222865910|gb|EEF03041.1|
            predicted protein [Populus trichocarpa]
          Length = 440

 Score =  439 bits (1130), Expect = e-121
 Identities = 206/297 (69%), Positives = 256/297 (86%)
 Frame = -2

Query: 918  LNLHDDALVCLELFNYASQQPRFRHDVSTYHLTIKKLGSAELYEEMDGVVNQVLAVPAIG 739
            + L DD LVCLELFN+ASQQ RFRHD STYH+TIKKLG A++Y+EMD VVNQ+LAVP IG
Sbjct: 133  ITLEDDPLVCLELFNWASQQHRFRHDASTYHVTIKKLGIAKMYQEMDDVVNQLLAVPHIG 192

Query: 738  SEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDEGCRPSIRTYNLLFTSFLSKRSNTYIN 559
            +EAL+N++IY++TEARKL++A++++K M+ S +  CRPSI+TYN+L T+ LS+  N+YIN
Sbjct: 193  NEALYNSIIYYFTEARKLTRAVNIFKRMKSSRNLDCRPSIKTYNILLTAMLSRGRNSYIN 252

Query: 558  HLYMETIRSLFKQMVNDGIEPDIFSMNSVIKGYVLSLHVNDALRVFHQMGVVYSCHPDSH 379
            H+YMET+R LFKQMV+DG+EPDIFS+NS+IKGY LSLHVNDALRVFHQMGVVY C P+S 
Sbjct: 253  HMYMETMRCLFKQMVDDGVEPDIFSLNSMIKGYALSLHVNDALRVFHQMGVVYKCLPNSF 312

Query: 378  SYSYIIHGLCCQGRTNNAKELYAEMKSKGFVPSGKAYNSLANSLAIIGEVEEAVRLLWEM 199
            SY Y++HGLC QGRTNNA+EL+ EMK KGFV S K++NSL N+LA+ GEV EAV  LWEM
Sbjct: 313  SYDYLVHGLCAQGRTNNARELFDEMKEKGFVLSNKSFNSLVNALALGGEVGEAVNYLWEM 372

Query: 198  NEKRKSADFITYRTVLDEICRQGKIGEAIRLLKEFQEKDLVDGFTYNKLLYVIEDEF 28
             +K +S D ITY+TVLDEICRQG+IGEA  LLKE+QEKDLVDG TY +LL+V+ED+F
Sbjct: 373  IDKHRSVDLITYKTVLDEICRQGRIGEATSLLKEWQEKDLVDGITYRELLHVLEDDF 429


>ref|XP_003606459.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355507514|gb|AES88656.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 418

 Score =  432 bits (1110), Expect = e-119
 Identities = 206/296 (69%), Positives = 257/296 (86%), Gaps = 2/296 (0%)
 Frame = -2

Query: 903 DALVCLELFNYASQQPRFRHDVSTYHLTIKKLGSAELYEEMDGVVNQVLAVPAIGSEALF 724
           D LVCLELF++AS QPRFRH+ S++H+TIKKLG A++Y+EMD VVNQ+LAV +IG+EALF
Sbjct: 109 DPLVCLELFHWASHQPRFRHNESSFHVTIKKLGDAKMYQEMDDVVNQLLAVRSIGNEALF 168

Query: 723 NTVIYFYTEARKLSKAIDVYKHMRKSMDE--GCRPSIRTYNLLFTSFLSKRSNTYINHLY 550
           N +IY++TEARKL++A+ V+KHM+ S +   G RPSIRTYN+LF +FLS+  NT+IN +Y
Sbjct: 169 NMIIYYFTEARKLTRAVIVFKHMKCSRNPNFGFRPSIRTYNILFGAFLSRGYNTHINLVY 228

Query: 549 METIRSLFKQMVNDGIEPDIFSMNSVIKGYVLSLHVNDALRVFHQMGVVYSCHPDSHSYS 370
           MET+R LF+QMVN+ IEPDIFS+NS+IKGYVLSLHVNDALR+FHQMGVVY C P+S +Y 
Sbjct: 229 METMRCLFRQMVNEHIEPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYDCKPNSLTYD 288

Query: 369 YIIHGLCCQGRTNNAKELYAEMKSKGFVPSGKAYNSLANSLAIIGEVEEAVRLLWEMNEK 190
           Y+IHGLC +GRT NAKELY EMK+KGFVPS K+YNSL NSLA++G+VEEAV  LWEM EK
Sbjct: 289 YLIHGLCAKGRTENAKELYHEMKAKGFVPSSKSYNSLVNSLALVGDVEEAVNYLWEMTEK 348

Query: 189 RKSADFITYRTVLDEICRQGKIGEAIRLLKEFQEKDLVDGFTYNKLLYVIEDEFAE 22
           +KS DFITYRTVLDEICR+G++ EA+R L+E QEKDLVDG TY KLLYV+ED++ +
Sbjct: 349 QKSVDFITYRTVLDEICRRGRVQEAMRFLQELQEKDLVDGHTYRKLLYVLEDDYGD 404


>ref|XP_003540749.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
           mitochondrial-like [Glycine max]
          Length = 438

 Score =  389 bits (999), Expect = e-106
 Identities = 182/264 (68%), Positives = 228/264 (86%), Gaps = 2/264 (0%)
 Frame = -2

Query: 813 KLGSAELYEEMDGVVNQVLAVPAIGSEALFNTVIYFYTEARKLSKAIDVYKHMRKSMDEG 634
           KLG+A++Y+EMD +VNQ+LAVP IGSEALFN VIY++T+ARKL++A++V+KHM+   +  
Sbjct: 145 KLGAAKMYQEMDDIVNQLLAVPLIGSEALFNMVIYYFTQARKLTRAVNVFKHMKSRRNLN 204

Query: 633 C--RPSIRTYNLLFTSFLSKRSNTYINHLYMETIRSLFKQMVNDGIEPDIFSMNSVIKGY 460
           C  RPSIRTYN+LF +FL + SN+YINH+YMETIR LF+QMV DGI+PDIFS+NS+IKGY
Sbjct: 205 CFFRPSIRTYNILFAAFLGRGSNSYINHVYMETIRCLFRQMVKDGIKPDIFSLNSMIKGY 264

Query: 459 VLSLHVNDALRVFHQMGVVYSCHPDSHSYSYIIHGLCCQGRTNNAKELYAEMKSKGFVPS 280
           VLSLHVNDALR+FHQMGV+Y C P++ +Y  +IHGLC QGRTNNAKELY+EMK+KGFVPS
Sbjct: 265 VLSLHVNDALRIFHQMGVIYDCPPNALTYDCLIHGLCAQGRTNNAKELYSEMKTKGFVPS 324

Query: 279 GKAYNSLANSLAIIGEVEEAVRLLWEMNEKRKSADFITYRTVLDEICRQGKIGEAIRLLK 100
            K+YNSL NSLA+ GE+EEAV  LWEM +K++SADFITY+TVLDEICR+G + E  R L+
Sbjct: 325 SKSYNSLVNSLALGGEIEEAVNYLWEMTDKQRSADFITYKTVLDEICRRGTVQEGTRFLQ 384

Query: 99  EFQEKDLVDGFTYNKLLYVIEDEF 28
           E QEKDLVDG  Y KLLYV+ED++
Sbjct: 385 ELQEKDLVDGHAYRKLLYVLEDDY 408