BLASTX nr result
ID: Coptis21_contig00003011
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00003011
(328 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003618085.1| Coproporphyrinogen-III oxidase [Medicago tru... 53 2e-15
ref|XP_002990281.1| hypothetical protein SELMODRAFT_131328 [Sela... 54 9e-15
ref|XP_002518396.1| coproporphyrinogen III oxidase, putative [Ri... 50 1e-14
ref|XP_002892163.1| coproporphyrinogen III oxidase [Arabidopsis ... 50 1e-14
ref|NP_171847.4| Coproporphyrinogen III oxidase [Arabidopsis tha... 50 1e-14
>ref|XP_003618085.1| Coproporphyrinogen-III oxidase [Medicago truncatula]
gi|355519420|gb|AET01044.1| Coproporphyrinogen-III
oxidase [Medicago truncatula]
Length = 399
Score = 52.8 bits (125), Expect(3) = 2e-15
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = -2
Query: 327 SRVLQ*GSVWEKVGVINVSFIYGEMPPEACRVAKGDAS 214
SRVLQ G+VWEK GV NVS +YG+MPP+A R AKG A+
Sbjct: 133 SRVLQDGAVWEKAGV-NVSVVYGQMPPDAYRAAKGAAA 169
Score = 49.7 bits (117), Expect(3) = 2e-15
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -1
Query: 178 ANVFHPKNLFAPTLHFNYHYFETDALK 98
++V HPKN FAPTLHFNY YFETDA K
Sbjct: 187 SSVLHPKNPFAPTLHFNYRYFETDAPK 213
Score = 24.3 bits (51), Expect(3) = 2e-15
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -3
Query: 215 PFFAAGISSVI 183
PFFAAGISSV+
Sbjct: 180 PFFAAGISSVL 190
>ref|XP_002990281.1| hypothetical protein SELMODRAFT_131328 [Selaginella moellendorffii]
gi|300141990|gb|EFJ08696.1| hypothetical protein
SELMODRAFT_131328 [Selaginella moellendorffii]
Length = 301
Score = 53.5 bits (127), Expect(3) = 9e-15
Identities = 27/39 (69%), Positives = 30/39 (76%)
Frame = -2
Query: 327 SRVLQ*GSVWEKVGVINVSFIYGEMPPEACRVAKGDASL 211
SRVLQ G+VWEK GV NVS +YG MPPEA R AK D S+
Sbjct: 36 SRVLQDGNVWEKAGV-NVSVVYGTMPPEAYRAAKADTSV 73
Score = 47.0 bits (110), Expect(3) = 9e-15
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -1
Query: 178 ANVFHPKNLFAPTLHFNYHYFETDALK 98
++V HPKN FAPT+HFNY YFETD K
Sbjct: 89 SSVMHPKNPFAPTVHFNYRYFETDTPK 115
Score = 23.9 bits (50), Expect(3) = 9e-15
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -3
Query: 215 PFFAAGISSVI 183
PFFAAGISSV+
Sbjct: 82 PFFAAGISSVM 92
>ref|XP_002518396.1| coproporphyrinogen III oxidase, putative [Ricinus communis]
gi|223542241|gb|EEF43783.1| coproporphyrinogen III
oxidase, putative [Ricinus communis]
Length = 393
Score = 50.1 bits (118), Expect(3) = 1e-14
Identities = 26/38 (68%), Positives = 29/38 (76%)
Frame = -2
Query: 327 SRVLQ*GSVWEKVGVINVSFIYGEMPPEACRVAKGDAS 214
SRVLQ G+VWEK GV NVS +YG MPPEA R AK +S
Sbjct: 130 SRVLQDGAVWEKAGV-NVSVVYGVMPPEAYRAAKAASS 166
Score = 49.7 bits (117), Expect(3) = 1e-14
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -1
Query: 178 ANVFHPKNLFAPTLHFNYHYFETDALK 98
++V HPKN FAPTLHFNY YFETDA K
Sbjct: 181 SSVLHPKNPFAPTLHFNYRYFETDAPK 207
Score = 24.3 bits (51), Expect(3) = 1e-14
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -3
Query: 215 PFFAAGISSVI 183
PFFAAGISSV+
Sbjct: 174 PFFAAGISSVL 184
>ref|XP_002892163.1| coproporphyrinogen III oxidase [Arabidopsis lyrata subsp. lyrata]
gi|297338005|gb|EFH68422.1| coproporphyrinogen III
oxidase [Arabidopsis lyrata subsp. lyrata]
Length = 387
Score = 50.4 bits (119), Expect(3) = 1e-14
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = -2
Query: 327 SRVLQ*GSVWEKVGVINVSFIYGEMPPEACRVAKGDAS 214
SRVLQ G+V+EK GV NVS +YG MPPEA R AKG AS
Sbjct: 124 SRVLQDGNVFEKAGV-NVSVVYGVMPPEAYRAAKGSAS 160
Score = 49.7 bits (117), Expect(3) = 1e-14
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -1
Query: 178 ANVFHPKNLFAPTLHFNYHYFETDALK 98
++V HPKN FAPTLHFNY YFETDA K
Sbjct: 175 SSVLHPKNPFAPTLHFNYRYFETDAPK 201
Score = 23.9 bits (50), Expect(3) = 1e-14
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -3
Query: 215 PFFAAGISSVI 183
PFFAAG+SSV+
Sbjct: 168 PFFAAGVSSVL 178
>ref|NP_171847.4| Coproporphyrinogen III oxidase [Arabidopsis thaliana]
gi|13431553|sp|Q9LR75.1|HEM6_ARATH RecName:
Full=Coproporphyrinogen-III oxidase, chloroplastic;
Short=Coprogen oxidase; Short=Coproporphyrinogenase;
AltName: Full=Protein LESION INITIATION 2; Flags:
Precursor gi|9280667|gb|AAF86536.1|AC002560_29 F21B7.10
[Arabidopsis thaliana] gi|14624992|dbj|BAB61876.1|
coproporphyrinogen III oxidase [Arabidopsis thaliana]
gi|17221413|emb|CAD12661.1| coproporphyrinogen III
oxidase [Arabidopsis thaliana]
gi|332189456|gb|AEE27577.1| Coproporphyrinogen III
oxidase [Arabidopsis thaliana]
Length = 386
Score = 50.4 bits (119), Expect(3) = 1e-14
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = -2
Query: 327 SRVLQ*GSVWEKVGVINVSFIYGEMPPEACRVAKGDAS 214
SRVLQ G+V+EK GV NVS +YG MPPEA R AKG AS
Sbjct: 123 SRVLQDGNVFEKAGV-NVSVVYGVMPPEAYRAAKGSAS 159
Score = 49.7 bits (117), Expect(3) = 1e-14
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -1
Query: 178 ANVFHPKNLFAPTLHFNYHYFETDALK 98
++V HPKN FAPTLHFNY YFETDA K
Sbjct: 174 SSVLHPKNPFAPTLHFNYRYFETDAPK 200
Score = 23.9 bits (50), Expect(3) = 1e-14
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -3
Query: 215 PFFAAGISSVI 183
PFFAAG+SSV+
Sbjct: 167 PFFAAGVSSVL 177