BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002961
         (660 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285833.1| PREDICTED: 30S ribosomal protein S13, chloro...   261   8e-68
gb|ADR30788.1| chloroplast 30S ribosomal protein S13 [Hevea bras...   259   2e-67
ref|XP_002302256.1| predicted protein [Populus trichocarpa] gi|1...   252   4e-65
ref|XP_004140327.1| PREDICTED: 30S ribosomal protein S13, chloro...   251   9e-65
ref|XP_002306609.1| predicted protein [Populus trichocarpa] gi|2...   250   2e-64

>ref|XP_002285833.1| PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis
           vinifera] gi|302141873|emb|CBI19076.3| unnamed protein
           product [Vitis vinifera]
          Length = 167

 Score =  261 bits (667), Expect = 8e-68
 Identities = 133/167 (79%), Positives = 149/167 (89%), Gaps = 2/167 (1%)
 Frame = -3

Query: 646 MAQAVAMPIAPSLSIIY--KSATTPTNFQFPNSKTSLPKFNGLSIKCARVGGVEIPNNKR 473
           MAQA+A P+APSLS+I   ++  +P+N     S  + PKF GLSIKCARVGGVEIPN+KR
Sbjct: 1   MAQALATPLAPSLSLICNTRNPLSPSN-NLSFSTPAPPKFGGLSIKCARVGGVEIPNSKR 59

Query: 472 VEYSLQYVHGIGRTRARQILNDLNMENKITKQLSEEELITIRDEVSKYMIEGDLRRFNAL 293
           VEYSLQY+HGIGR+R++QIL DL MENKITK LSEEELIT+RDEVSKYMIEGDLRRFNAL
Sbjct: 60  VEYSLQYIHGIGRSRSKQILCDLGMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 119

Query: 292 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKRVAIAGKKKA 152
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKRV+IAGKKKA
Sbjct: 120 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKRVSIAGKKKA 166


>gb|ADR30788.1| chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
          Length = 168

 Score =  259 bits (663), Expect = 2e-67
 Identities = 130/170 (76%), Positives = 149/170 (87%), Gaps = 3/170 (1%)
 Frame = -3

Query: 646 MAQAVAMPIAPSLSII---YKSATTPTNFQFPNSKTSLPKFNGLSIKCARVGGVEIPNNK 476
           MAQ +AMP+APSLS+I   +++ +  T    P S    PK +GLSI+CARVGGVEIPNNK
Sbjct: 1   MAQTLAMPVAPSLSLICNGWRNNSLSTFVSLPISNP--PKIHGLSIQCARVGGVEIPNNK 58

Query: 475 RVEYSLQYVHGIGRTRARQILNDLNMENKITKQLSEEELITIRDEVSKYMIEGDLRRFNA 296
           RVEYSLQY+HG+GR+RARQIL+DL+M+NKITK LSEEELIT+RDEVSKYMIEGDLRRFNA
Sbjct: 59  RVEYSLQYIHGVGRSRARQILSDLSMQNKITKDLSEEELITLRDEVSKYMIEGDLRRFNA 118

Query: 295 LAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKRVAIAGKKKAPR 146
           L IR LKEIQC+RG+RHIQGLPCRGQRTKNNCRTLKGKRV +AGKKKAPR
Sbjct: 119 LNIRGLKEIQCHRGIRHIQGLPCRGQRTKNNCRTLKGKRVTVAGKKKAPR 168


>ref|XP_002302256.1| predicted protein [Populus trichocarpa] gi|118488232|gb|ABK95935.1|
           unknown [Populus trichocarpa]
           gi|222843982|gb|EEE81529.1| predicted protein [Populus
           trichocarpa]
          Length = 168

 Score =  252 bits (644), Expect = 4e-65
 Identities = 129/170 (75%), Positives = 142/170 (83%), Gaps = 3/170 (1%)
 Frame = -3

Query: 646 MAQAVAMPIAPSLSII---YKSATTPTNFQFPNSKTSLPKFNGLSIKCARVGGVEIPNNK 476
           MAQ +AMP+ PSLS I    KS +   +   P S    PK   LSI+CARVGGVEIPN+K
Sbjct: 1   MAQTLAMPVVPSLSAICNGLKSTSLSNSISLPISNP--PKAGSLSIRCARVGGVEIPNSK 58

Query: 475 RVEYSLQYVHGIGRTRARQILNDLNMENKITKQLSEEELITIRDEVSKYMIEGDLRRFNA 296
           RVEYSLQY+HGIGR+ ARQIL+DL+MENKITK LSEEELI +RDEVSKY IEGDLRRFNA
Sbjct: 59  RVEYSLQYIHGIGRSNARQILSDLSMENKITKDLSEEELIILRDEVSKYTIEGDLRRFNA 118

Query: 295 LAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKRVAIAGKKKAPR 146
           L IRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKRV+I GKKKAPR
Sbjct: 119 LNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKRVSIPGKKKAPR 168


>ref|XP_004140327.1| PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Cucumis
           sativus] gi|449518817|ref|XP_004166432.1| PREDICTED: 30S
           ribosomal protein S13, chloroplastic-like [Cucumis
           sativus]
          Length = 167

 Score =  251 bits (641), Expect = 9e-65
 Identities = 129/170 (75%), Positives = 141/170 (82%), Gaps = 3/170 (1%)
 Frame = -3

Query: 646 MAQAVAMPIAPSLSIIYKSAT---TPTNFQFPNSKTSLPKFNGLSIKCARVGGVEIPNNK 476
           MAQ  A+P+A SLS+I  S           FP S    P+  GL IKC RVGGVEIPNNK
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISN---PQVRGLQIKCVRVGGVEIPNNK 57

Query: 475 RVEYSLQYVHGIGRTRARQILNDLNMENKITKQLSEEELITIRDEVSKYMIEGDLRRFNA 296
           RV+YSLQYVHGIGR  A++IL DLN+ENKITK LSEEELI+IRDEVSKYMIEGDLRRFNA
Sbjct: 58  RVQYSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNA 117

Query: 295 LAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKRVAIAGKKKAPR 146
           LAIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGK++AIAGKKKAPR
Sbjct: 118 LAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167


>ref|XP_002306609.1| predicted protein [Populus trichocarpa] gi|222856058|gb|EEE93605.1|
           predicted protein [Populus trichocarpa]
          Length = 168

 Score =  250 bits (638), Expect = 2e-64
 Identities = 129/170 (75%), Positives = 144/170 (84%), Gaps = 3/170 (1%)
 Frame = -3

Query: 646 MAQAVAMPIAPSLSII---YKSATTPTNFQFPNSKTSLPKFNGLSIKCARVGGVEIPNNK 476
           MAQ +A+P+ PSLS I    K+ +  ++   P S    PK   LSI+CARVGGVEIPN+K
Sbjct: 1   MAQTLAIPVVPSLSAICNGLKNTSLSSSISPPVSNP--PKVCSLSIRCARVGGVEIPNSK 58

Query: 475 RVEYSLQYVHGIGRTRARQILNDLNMENKITKQLSEEELITIRDEVSKYMIEGDLRRFNA 296
           RVEYSLQY+HGIGR+ ARQIL+DL MENKITK LSE+ELIT+RDEVSKYMIEGDLRRFNA
Sbjct: 59  RVEYSLQYIHGIGRSIARQILSDLTMENKITKDLSEDELITLRDEVSKYMIEGDLRRFNA 118

Query: 295 LAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKRVAIAGKKKAPR 146
           L IRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKRV+I GKKKAPR
Sbjct: 119 LNIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKRVSIPGKKKAPR 168