BLASTX nr result

ID: Coptis21_contig00002631 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002631
         (847 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266163.1| PREDICTED: ribosome biogenesis protein NSA2 ...   478   e-133
emb|CBI22790.3| unnamed protein product [Vitis vinifera]              476   e-132
ref|XP_002533899.1| TGF-beta-inducible nuclear protein, putative...   470   e-130
gb|ABK92490.1| unknown [Populus trichocarpa]                          468   e-130
ref|XP_002323387.1| predicted protein [Populus trichocarpa] gi|2...   468   e-129

>ref|XP_002266163.1| PREDICTED: ribosome biogenesis protein NSA2 homolog [Vitis
           vinifera]
          Length = 260

 Score =  478 bits (1229), Expect = e-133
 Identities = 228/259 (88%), Positives = 250/259 (96%)
 Frame = -3

Query: 779 MPQGDYIELHRKRYGYRPDHFERKRKRDAREVHEVSRKAQKTIGGKGKRYAKQRYAEKAQ 600
           MPQGDYI+LHRKR+GYRPDHFERKRK++AREVH+ S  AQK +G KGK +AK+RYAEKAQ
Sbjct: 1   MPQGDYIDLHRKRHGYRPDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAQ 60

Query: 599 MKRTLAMHEESSSRRKVDDEVHEGALPAYLLDREQTTRAKVLSNSIKQKRKEKAGKWDVP 420
           MK+TLAMHEESSSRRKVDD+VHEGA+PAYLLDRE TTRAKVLSN+IKQKRKEKAGKW+VP
Sbjct: 61  MKKTLAMHEESSSRRKVDDDVHEGAVPAYLLDRETTTRAKVLSNTIKQKRKEKAGKWEVP 120

Query: 419 LPKVRPVAEDEMFKVVRTGQRKSKQWKRMVTKVTFVGPSFTRKPPKYERFIRPTGLRFSK 240
           LPKVRPVAEDEMFKV+RTG+RK+KQWKRMVTK TFVGP+FTRKPPKYERFIRP+GLRF+K
Sbjct: 121 LPKVRPVAEDEMFKVLRTGKRKTKQWKRMVTKATFVGPAFTRKPPKYERFIRPSGLRFTK 180

Query: 239 AHVTHPELKCTFNLEIIGIKKNPNGNMYTSLGVVTRGTIIEVNVSELGLVTPAGKVVWGK 60
           AHVTHPELKCTFNLEIIG+KKNPNG MYTSLGV+T+GTIIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFNLEIIGVKKNPNGQMYTSLGVMTKGTIIEVNVSELGLVTPAGKVVWGK 240

Query: 59  YAQVTNNPENDGCINAVLL 3
           YAQVTNNPENDGCINAVLL
Sbjct: 241 YAQVTNNPENDGCINAVLL 259


>emb|CBI22790.3| unnamed protein product [Vitis vinifera]
          Length = 280

 Score =  476 bits (1224), Expect = e-132
 Identities = 227/258 (87%), Positives = 249/258 (96%)
 Frame = -3

Query: 776 PQGDYIELHRKRYGYRPDHFERKRKRDAREVHEVSRKAQKTIGGKGKRYAKQRYAEKAQM 597
           PQGDYI+LHRKR+GYRPDHFERKRK++AREVH+ S  AQK +G KGK +AK+RYAEKAQM
Sbjct: 22  PQGDYIDLHRKRHGYRPDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKAQM 81

Query: 596 KRTLAMHEESSSRRKVDDEVHEGALPAYLLDREQTTRAKVLSNSIKQKRKEKAGKWDVPL 417
           K+TLAMHEESSSRRKVDD+VHEGA+PAYLLDRE TTRAKVLSN+IKQKRKEKAGKW+VPL
Sbjct: 82  KKTLAMHEESSSRRKVDDDVHEGAVPAYLLDRETTTRAKVLSNTIKQKRKEKAGKWEVPL 141

Query: 416 PKVRPVAEDEMFKVVRTGQRKSKQWKRMVTKVTFVGPSFTRKPPKYERFIRPTGLRFSKA 237
           PKVRPVAEDEMFKV+RTG+RK+KQWKRMVTK TFVGP+FTRKPPKYERFIRP+GLRF+KA
Sbjct: 142 PKVRPVAEDEMFKVLRTGKRKTKQWKRMVTKATFVGPAFTRKPPKYERFIRPSGLRFTKA 201

Query: 236 HVTHPELKCTFNLEIIGIKKNPNGNMYTSLGVVTRGTIIEVNVSELGLVTPAGKVVWGKY 57
           HVTHPELKCTFNLEIIG+KKNPNG MYTSLGV+T+GTIIEVNVSELGLVTPAGKVVWGKY
Sbjct: 202 HVTHPELKCTFNLEIIGVKKNPNGQMYTSLGVMTKGTIIEVNVSELGLVTPAGKVVWGKY 261

Query: 56  AQVTNNPENDGCINAVLL 3
           AQVTNNPENDGCINAVLL
Sbjct: 262 AQVTNNPENDGCINAVLL 279


>ref|XP_002533899.1| TGF-beta-inducible nuclear protein, putative [Ricinus communis]
           gi|223526141|gb|EEF28481.1| TGF-beta-inducible nuclear
           protein, putative [Ricinus communis]
          Length = 260

 Score =  470 bits (1209), Expect = e-130
 Identities = 223/259 (86%), Positives = 248/259 (95%)
 Frame = -3

Query: 779 MPQGDYIELHRKRYGYRPDHFERKRKRDAREVHEVSRKAQKTIGGKGKRYAKQRYAEKAQ 600
           MPQGDYIELHRKR+GYR DHFERKRK++AREVH+ S +AQKT+G KGK  AK+ YAEKA 
Sbjct: 1   MPQGDYIELHRKRHGYRLDHFERKRKKEAREVHKRSERAQKTLGIKGKMIAKKNYAEKAL 60

Query: 599 MKRTLAMHEESSSRRKVDDEVHEGALPAYLLDREQTTRAKVLSNSIKQKRKEKAGKWDVP 420
           MK+TLAMHEESSSRRKVDD+VHEGA+PAYLLDRE TTRAK+LSN++KQKRKEKAGKW+VP
Sbjct: 61  MKKTLAMHEESSSRRKVDDDVHEGAVPAYLLDRENTTRAKILSNTVKQKRKEKAGKWEVP 120

Query: 419 LPKVRPVAEDEMFKVVRTGQRKSKQWKRMVTKVTFVGPSFTRKPPKYERFIRPTGLRFSK 240
           LPKVRPVAEDEMFKV+R+G+R++KQWKRMVTKVTFVGP FTRKPPKYERFIRP+GLRF+K
Sbjct: 121 LPKVRPVAEDEMFKVIRSGKRRTKQWKRMVTKVTFVGPGFTRKPPKYERFIRPSGLRFTK 180

Query: 239 AHVTHPELKCTFNLEIIGIKKNPNGNMYTSLGVVTRGTIIEVNVSELGLVTPAGKVVWGK 60
           AHVTHPELKCTFNLEIIG+KKNPNG MYTSLGV+T+G+IIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGSIIEVNVSELGLVTPAGKVVWGK 240

Query: 59  YAQVTNNPENDGCINAVLL 3
           YAQVTNNPENDGCINAVLL
Sbjct: 241 YAQVTNNPENDGCINAVLL 259


>gb|ABK92490.1| unknown [Populus trichocarpa]
          Length = 260

 Score =  468 bits (1204), Expect = e-130
 Identities = 223/259 (86%), Positives = 245/259 (94%)
 Frame = -3

Query: 779 MPQGDYIELHRKRYGYRPDHFERKRKRDAREVHEVSRKAQKTIGGKGKRYAKQRYAEKAQ 600
           MPQGDYIELHRKR+GYR DHFERKRK++AREVH+ S +AQK +G KGK  AK+ YAEKA 
Sbjct: 1   MPQGDYIELHRKRHGYRLDHFERKRKKEAREVHKHSERAQKALGIKGKMIAKKNYAEKAL 60

Query: 599 MKRTLAMHEESSSRRKVDDEVHEGALPAYLLDREQTTRAKVLSNSIKQKRKEKAGKWDVP 420
           MK+TLAMHEES+SRRKVDD+VH+GA+PAYLLDRE TTRAK+LSNSIKQKRKEKAGKW+VP
Sbjct: 61  MKKTLAMHEESTSRRKVDDDVHDGAIPAYLLDRENTTRAKILSNSIKQKRKEKAGKWEVP 120

Query: 419 LPKVRPVAEDEMFKVVRTGQRKSKQWKRMVTKVTFVGPSFTRKPPKYERFIRPTGLRFSK 240
           LPKVRPVAEDEMFKV+R+G+RK+KQWKRMVTK TFVGP FTRKPPKYERFIRPTGLRF+K
Sbjct: 121 LPKVRPVAEDEMFKVIRSGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTK 180

Query: 239 AHVTHPELKCTFNLEIIGIKKNPNGNMYTSLGVVTRGTIIEVNVSELGLVTPAGKVVWGK 60
           AHVTHPELKCTFNLEIIG+KKNPNG  YTSLGV+T+GTIIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFNLEIIGVKKNPNGPTYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240

Query: 59  YAQVTNNPENDGCINAVLL 3
           YAQVTNNPENDGCINAVLL
Sbjct: 241 YAQVTNNPENDGCINAVLL 259


>ref|XP_002323387.1| predicted protein [Populus trichocarpa] gi|222868017|gb|EEF05148.1|
           predicted protein [Populus trichocarpa]
          Length = 260

 Score =  468 bits (1203), Expect = e-129
 Identities = 223/259 (86%), Positives = 245/259 (94%)
 Frame = -3

Query: 779 MPQGDYIELHRKRYGYRPDHFERKRKRDAREVHEVSRKAQKTIGGKGKRYAKQRYAEKAQ 600
           MPQGDYIELHRKR+GYR DHFERKRK++AREVH+ S +AQK +G KGK  AK+ YAEKA 
Sbjct: 1   MPQGDYIELHRKRHGYRLDHFERKRKKEAREVHKHSERAQKALGIKGKMIAKKNYAEKAL 60

Query: 599 MKRTLAMHEESSSRRKVDDEVHEGALPAYLLDREQTTRAKVLSNSIKQKRKEKAGKWDVP 420
           MK+TLAMHEES+SRRKVDD+VH+GA+PAYLLDRE TTRAK+LSNSIKQKRKEKAGKW+VP
Sbjct: 61  MKKTLAMHEESTSRRKVDDDVHDGAVPAYLLDRENTTRAKILSNSIKQKRKEKAGKWEVP 120

Query: 419 LPKVRPVAEDEMFKVVRTGQRKSKQWKRMVTKVTFVGPSFTRKPPKYERFIRPTGLRFSK 240
           LPKVRPVAEDEMFKV+R+G+RK+KQWKRMVTK TFVGP FTRKPPKYERFIRPTGLRF+K
Sbjct: 121 LPKVRPVAEDEMFKVIRSGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTK 180

Query: 239 AHVTHPELKCTFNLEIIGIKKNPNGNMYTSLGVVTRGTIIEVNVSELGLVTPAGKVVWGK 60
           AHVTHPELKCTFNLEIIG+KKNPNG  YTSLGV+T+GTIIEVNVSELGLVTPAGKVVWGK
Sbjct: 181 AHVTHPELKCTFNLEIIGVKKNPNGPTYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGK 240

Query: 59  YAQVTNNPENDGCINAVLL 3
           YAQVTNNPENDGCINAVLL
Sbjct: 241 YAQVTNNPENDGCINAVLL 259


Top