BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002553
         (1050 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II su...   319   6e-85
dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]    318   1e-84
dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgar...   318   2e-84
ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II su...   316   7e-84
ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polype...   315   9e-84

>ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Brachypodium distachyon]
          Length = 177

 Score =  319 bits (818), Expect = 6e-85
 Identities = 162/200 (81%), Positives = 169/200 (84%)
 Frame = +1

Query: 106 MFFHIVLERNMQLHPRHFGPNLREKIVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 285
           MFFHIVLERNMQLHPRHFGP+LR+K+VAKLMKDVEGTCSGRHGFVVAITGV+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60

Query: 286 DGTGFVTFPVKYQCVVFRPFKGEILEAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 465
           +GTGFVTFPVKYQCVVFRPFKGEILEAVV                              G
Sbjct: 61  EGTGFVTFPVKYQCVVFRPFKGEILEAVV------------------------TMVNKMG 96

Query: 466 FFAEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEI 645
           FFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEI
Sbjct: 97  FFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEI 156

Query: 646 FCIGTIKDDFLGVINDPGAA 705
           FCIGTIKDDFLGVI+DPGAA
Sbjct: 157 FCIGTIKDDFLGVISDPGAA 176


>dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 236

 Score =  318 bits (815), Expect = 1e-84
 Identities = 161/201 (80%), Positives = 169/201 (84%)
 Frame = +1

Query: 103 KMFFHIVLERNMQLHPRHFGPNLREKIVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLI 282
           +MFFHIVLERNMQLHPRHFGP+LR+K+VAKLMKDVEGTCSGRHGFVVAITGV+ IGKGLI
Sbjct: 59  EMFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLI 118

Query: 283 RDGTGFVTFPVKYQCVVFRPFKGEILEAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 462
           R+GTGFVTFPVKYQCVVFRPFKGEILEAVV                              
Sbjct: 119 REGTGFVTFPVKYQCVVFRPFKGEILEAVV------------------------TMVNKM 154

Query: 463 GFFAEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATE 642
           GFFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATE
Sbjct: 155 GFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATE 214

Query: 643 IFCIGTIKDDFLGVINDPGAA 705
           IFCIGTIKDDFLGVI+DPG A
Sbjct: 215 IFCIGTIKDDFLGVISDPGGA 235


>dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum
           vulgare subsp. vulgare]
          Length = 177

 Score =  318 bits (814), Expect = 2e-84
 Identities = 161/200 (80%), Positives = 168/200 (84%)
 Frame = +1

Query: 106 MFFHIVLERNMQLHPRHFGPNLREKIVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 285
           MFFHIVLERNMQLHPRHFGP+LR+K+VAKLMKDVEGTCSGRHGFVVAITGV+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60

Query: 286 DGTGFVTFPVKYQCVVFRPFKGEILEAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 465
           +GTGFVTFPVKYQCVVFRPFKGEILEAVV                              G
Sbjct: 61  EGTGFVTFPVKYQCVVFRPFKGEILEAVV------------------------TMVNKMG 96

Query: 466 FFAEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEI 645
           FFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEI
Sbjct: 97  FFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEI 156

Query: 646 FCIGTIKDDFLGVINDPGAA 705
           FCIGTIKDDFLGVI+DPG A
Sbjct: 157 FCIGTIKDDFLGVISDPGGA 176


>ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449518487|ref|XP_004166273.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 176

 Score =  316 bits (809), Expect = 7e-84
 Identities = 160/200 (80%), Positives = 167/200 (83%)
 Frame = +1

Query: 106 MFFHIVLERNMQLHPRHFGPNLREKIVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 285
           MFFHIVLERNMQLHPRHFG NLRE +V+KLMKDVEGTCSGRHGFVVAITG+++IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 286 DGTGFVTFPVKYQCVVFRPFKGEILEAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 465
           DGTGFVTFPVKYQCVVFRPFKGEILEAVV                              G
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVV------------------------TMVNKMG 96

Query: 466 FFAEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEI 645
           FFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQK+SEVRLKIIGTRVDATEI
Sbjct: 97  FFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI 156

Query: 646 FCIGTIKDDFLGVINDPGAA 705
           FCIGTIKDDFLGVINDP AA
Sbjct: 157 FCIGTIKDDFLGVINDPSAA 176


>ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
           gi|242056199|ref|XP_002457245.1| hypothetical protein
           SORBIDRAFT_03g003990 [Sorghum bicolor]
           gi|242090461|ref|XP_002441063.1| hypothetical protein
           SORBIDRAFT_09g019690 [Sorghum bicolor]
           gi|194708012|gb|ACF88090.1| unknown [Zea mays]
           gi|195628342|gb|ACG36001.1| DNA-directed RNA polymerase
           II 19 kDa polypeptide [Zea mays]
           gi|241929220|gb|EES02365.1| hypothetical protein
           SORBIDRAFT_03g003990 [Sorghum bicolor]
           gi|241946348|gb|EES19493.1| hypothetical protein
           SORBIDRAFT_09g019690 [Sorghum bicolor]
           gi|413945277|gb|AFW77926.1| DNA-directed RNA polymerase
           II polypeptide [Zea mays]
          Length = 177

 Score =  315 bits (808), Expect = 9e-84
 Identities = 159/200 (79%), Positives = 169/200 (84%)
 Frame = +1

Query: 106 MFFHIVLERNMQLHPRHFGPNLREKIVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 285
           MFFHIVLERNMQLHPRHFGP+LR+K+V+KL+KDVEGTCSGRHGFVVAITGV+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60

Query: 286 DGTGFVTFPVKYQCVVFRPFKGEILEAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 465
           +GTG+VTFPVKYQCVVFRPFKGEILEAVV                              G
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVV------------------------TMVNKMG 96

Query: 466 FFAEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEI 645
           FFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEI
Sbjct: 97  FFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEI 156

Query: 646 FCIGTIKDDFLGVINDPGAA 705
           FCIGTIKDDFLGVI+DPGAA
Sbjct: 157 FCIGTIKDDFLGVISDPGAA 176