BLASTX nr result
ID: Coptis21_contig00002552
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00002552 (1150 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II su... 337 4e-90 dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare] 337 4e-90 dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgar... 337 4e-90 ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II su... 333 4e-89 ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polype... 333 6e-89 >ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Brachypodium distachyon] Length = 177 Score = 337 bits (863), Expect = 4e-90 Identities = 164/170 (96%), Positives = 169/170 (99%) Frame = +3 Query: 639 MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 818 MFFHIVLERNMQLHPRHFGP+LR+KLVAKLMKDVEGTCSGRHGFVVAITGV+ IGKGLIR Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60 Query: 819 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 998 +GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ Sbjct: 61 EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120 Query: 999 SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 1148 SGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI Sbjct: 121 SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170 >dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 236 Score = 337 bits (863), Expect = 4e-90 Identities = 164/170 (96%), Positives = 169/170 (99%) Frame = +3 Query: 639 MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 818 MFFHIVLERNMQLHPRHFGP+LR+KLVAKLMKDVEGTCSGRHGFVVAITGV+ IGKGLIR Sbjct: 60 MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 119 Query: 819 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 998 +GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ Sbjct: 120 EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 179 Query: 999 SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 1148 SGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI Sbjct: 180 SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 229 >dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 177 Score = 337 bits (863), Expect = 4e-90 Identities = 164/170 (96%), Positives = 169/170 (99%) Frame = +3 Query: 639 MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 818 MFFHIVLERNMQLHPRHFGP+LR+KLVAKLMKDVEGTCSGRHGFVVAITGV+ IGKGLIR Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60 Query: 819 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 998 +GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ Sbjct: 61 EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120 Query: 999 SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 1148 SGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI Sbjct: 121 SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170 >ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cucumis sativus] gi|449518487|ref|XP_004166273.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cucumis sativus] Length = 176 Score = 333 bits (855), Expect = 4e-89 Identities = 162/170 (95%), Positives = 168/170 (98%) Frame = +3 Query: 639 MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 818 MFFHIVLERNMQLHPRHFG NLRE LV+KLMKDVEGTCSGRHGFVVAITG+++IGKGLIR Sbjct: 1 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60 Query: 819 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 998 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120 Query: 999 SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 1148 SGD+PNYTTSDGSVKIQK+SEVRLKIIGTRVDATEIFCIGTIKDDFLGVI Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170 >ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays] gi|242056199|ref|XP_002457245.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor] gi|242090461|ref|XP_002441063.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor] gi|194708012|gb|ACF88090.1| unknown [Zea mays] gi|195628342|gb|ACG36001.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays] gi|241929220|gb|EES02365.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor] gi|241946348|gb|EES19493.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor] gi|413945277|gb|AFW77926.1| DNA-directed RNA polymerase II polypeptide [Zea mays] Length = 177 Score = 333 bits (853), Expect = 6e-89 Identities = 161/170 (94%), Positives = 169/170 (99%) Frame = +3 Query: 639 MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 818 MFFHIVLERNMQLHPRHFGP+LR+KLV+KL+KDVEGTCSGRHGFVVAITGV+ IGKGLIR Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60 Query: 819 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 998 +GTG+VTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ Sbjct: 61 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120 Query: 999 SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 1148 SGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI Sbjct: 121 SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170