BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002552
         (1150 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II su...   337   4e-90
dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]    337   4e-90
dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgar...   337   4e-90
ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II su...   333   4e-89
ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polype...   333   6e-89

>ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
            [Brachypodium distachyon]
          Length = 177

 Score =  337 bits (863), Expect = 4e-90
 Identities = 164/170 (96%), Positives = 169/170 (99%)
 Frame = +3

Query: 639  MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 818
            MFFHIVLERNMQLHPRHFGP+LR+KLVAKLMKDVEGTCSGRHGFVVAITGV+ IGKGLIR
Sbjct: 1    MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60

Query: 819  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 998
            +GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61   EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 999  SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 1148
            SGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI
Sbjct: 121  SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170


>dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 236

 Score =  337 bits (863), Expect = 4e-90
 Identities = 164/170 (96%), Positives = 169/170 (99%)
 Frame = +3

Query: 639  MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 818
            MFFHIVLERNMQLHPRHFGP+LR+KLVAKLMKDVEGTCSGRHGFVVAITGV+ IGKGLIR
Sbjct: 60   MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 119

Query: 819  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 998
            +GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 120  EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 179

Query: 999  SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 1148
            SGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI
Sbjct: 180  SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 229


>dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare]
            gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum
            vulgare subsp. vulgare]
          Length = 177

 Score =  337 bits (863), Expect = 4e-90
 Identities = 164/170 (96%), Positives = 169/170 (99%)
 Frame = +3

Query: 639  MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 818
            MFFHIVLERNMQLHPRHFGP+LR+KLVAKLMKDVEGTCSGRHGFVVAITGV+ IGKGLIR
Sbjct: 1    MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60

Query: 819  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 998
            +GTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61   EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 999  SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 1148
            SGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI
Sbjct: 121  SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170


>ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cucumis
            sativus] gi|449518487|ref|XP_004166273.1| PREDICTED:
            DNA-directed RNA polymerase II subunit RPB7-like [Cucumis
            sativus]
          Length = 176

 Score =  333 bits (855), Expect = 4e-89
 Identities = 162/170 (95%), Positives = 168/170 (98%)
 Frame = +3

Query: 639  MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 818
            MFFHIVLERNMQLHPRHFG NLRE LV+KLMKDVEGTCSGRHGFVVAITG+++IGKGLIR
Sbjct: 1    MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 819  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 998
            DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61   DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 999  SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 1148
            SGD+PNYTTSDGSVKIQK+SEVRLKIIGTRVDATEIFCIGTIKDDFLGVI
Sbjct: 121  SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170


>ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
            gi|242056199|ref|XP_002457245.1| hypothetical protein
            SORBIDRAFT_03g003990 [Sorghum bicolor]
            gi|242090461|ref|XP_002441063.1| hypothetical protein
            SORBIDRAFT_09g019690 [Sorghum bicolor]
            gi|194708012|gb|ACF88090.1| unknown [Zea mays]
            gi|195628342|gb|ACG36001.1| DNA-directed RNA polymerase
            II 19 kDa polypeptide [Zea mays]
            gi|241929220|gb|EES02365.1| hypothetical protein
            SORBIDRAFT_03g003990 [Sorghum bicolor]
            gi|241946348|gb|EES19493.1| hypothetical protein
            SORBIDRAFT_09g019690 [Sorghum bicolor]
            gi|413945277|gb|AFW77926.1| DNA-directed RNA polymerase
            II polypeptide [Zea mays]
          Length = 177

 Score =  333 bits (853), Expect = 6e-89
 Identities = 161/170 (94%), Positives = 169/170 (99%)
 Frame = +3

Query: 639  MFFHIVLERNMQLHPRHFGPNLREKLVAKLMKDVEGTCSGRHGFVVAITGVDSIGKGLIR 818
            MFFHIVLERNMQLHPRHFGP+LR+KLV+KL+KDVEGTCSGRHGFVVAITGV+ IGKGLIR
Sbjct: 1    MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60

Query: 819  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 998
            +GTG+VTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61   EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 999  SGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 1148
            SGD+PNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI
Sbjct: 121  SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170