BLASTX nr result

ID: Coptis21_contig00000282 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00000282
         (1675 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylat...   315   2e-83
emb|CBI29360.3| unnamed protein product [Vitis vinifera]              315   2e-83
emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]   312   2e-82
ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-l...   304   5e-80
ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-l...   303   9e-80

>ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
            [Vitis vinifera]
          Length = 1093

 Score =  315 bits (808), Expect = 2e-83
 Identities = 194/469 (41%), Positives = 269/469 (57%), Gaps = 33/469 (7%)
 Frame = +3

Query: 3    SVTEVDLNDIFSKVGKVSFVRLCRDPITQLSLGRACVYYSDSQHAKIAVESFNSQPIKGR 182
            ++ E  L D+F +V  V  +R+CRD   + SLG A V ++  Q A  A+E  N  P+ G+
Sbjct: 483  AIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGK 542

Query: 183  NITVGFSNTE----RITSHKLFVKHLPPMINTQLLLREIFAQYGTIISC------SGNSK 332
             I + FS+ +    +     +F+K+L P I+ + LL + FA +GT++SC      +G SK
Sbjct: 543  PIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALL-DTFAAFGTVLSCKIALDNNGQSK 601

Query: 333  GCGFVHFEEEQAAMSALAR-HGALVNGVEISVDLFISRQEREELEECRKHNTIYIENMSK 509
            G GFV FE+E+AA +A+ R +G L+N  ++ V LF+  QER       K   +Y++N+S+
Sbjct: 602  GYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSE 661

Query: 510  AGYPQSMWSYCLYYGEIVDSCYPKEAT---TDYGFVVFKKHEDAARAIQCLNGRAFGD-Q 677
                  + +    YG I  +   ++A+     +GFV F+  + AA A++ LNG  F D +
Sbjct: 662  TTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDK 721

Query: 678  LWYVAWAWSKSKRNVQ-----------------GTNLYLKNFDDSIDDKRLKELFSEFGT 806
            +WYV  A  KS+R  +                 GTNLYLKN DDS++D++LKELFSEFGT
Sbjct: 722  VWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGT 781

Query: 807  ITSCKVMLDSQGQSRGFGFVAFSTPENATEAVKEMNGKMIGKKPLYVAVAQSKEERKAIL 986
            ITSCKVMLD QG S+G GFVAF TPE AT A+  MNGKMIG+KPLYVAVAQ KEERKA L
Sbjct: 782  ITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARL 841

Query: 987  EARPXXXXXXXXXXXXXXXXXXXXGLHLSSPLASTPVSQQPYFGQGYAGLVRPQPAGCGY 1166
            +A+                     G H  +P  +    QQ YFGQG  GL+  QPAG G+
Sbjct: 842  QAQ---FAQIRSPGAMTPLQSGVPGFHSGAPRLA---PQQLYFGQGTPGLIPTQPAGYGF 895

Query: 1167 -EQFDFGNRPAMALQYTVPDHLRSQGQPELPIGVRLSETPQQQLHQARP 1310
             +Q   G RP +A  + +P  L+ QGQP   +GVR     QQ  HQ +P
Sbjct: 896  QQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNSQQMQHQQQP 944



 Score = 65.5 bits (158), Expect = 4e-08
 Identities = 32/69 (46%), Positives = 42/69 (60%)
 Frame = +2

Query: 1454 APTLGPQPPYFRQGYSDLVPLEPAGCGYEQQFVFGNLPAMALKYMMPDHLWSEGQPGLPV 1633
            AP L PQ  YF QG   L+P +PAG G++QQ + G  P +A  ++MP  L  +GQPG  +
Sbjct: 868  APRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRM 927

Query: 1634 GVNRSGIPQ 1660
            GV R G  Q
Sbjct: 928  GVRRGGNSQ 936


>emb|CBI29360.3| unnamed protein product [Vitis vinifera]
          Length = 633

 Score =  315 bits (808), Expect = 2e-83
 Identities = 194/469 (41%), Positives = 269/469 (57%), Gaps = 33/469 (7%)
 Frame = +3

Query: 3    SVTEVDLNDIFSKVGKVSFVRLCRDPITQLSLGRACVYYSDSQHAKIAVESFNSQPIKGR 182
            ++ E  L D+F +V  V  +R+CRD   + SLG A V ++  Q A  A+E  N  P+ G+
Sbjct: 23   AIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGK 82

Query: 183  NITVGFSNTE----RITSHKLFVKHLPPMINTQLLLREIFAQYGTIISC------SGNSK 332
             I + FS+ +    +     +F+K+L P I+ + LL + FA +GT++SC      +G SK
Sbjct: 83   PIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALL-DTFAAFGTVLSCKIALDNNGQSK 141

Query: 333  GCGFVHFEEEQAAMSALAR-HGALVNGVEISVDLFISRQEREELEECRKHNTIYIENMSK 509
            G GFV FE+E+AA +A+ R +G L+N  ++ V LF+  QER       K   +Y++N+S+
Sbjct: 142  GYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSE 201

Query: 510  AGYPQSMWSYCLYYGEIVDSCYPKEAT---TDYGFVVFKKHEDAARAIQCLNGRAFGD-Q 677
                  + +    YG I  +   ++A+     +GFV F+  + AA A++ LNG  F D +
Sbjct: 202  TTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDK 261

Query: 678  LWYVAWAWSKSKRNVQ-----------------GTNLYLKNFDDSIDDKRLKELFSEFGT 806
            +WYV  A  KS+R  +                 GTNLYLKN DDS++D++LKELFSEFGT
Sbjct: 262  VWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGT 321

Query: 807  ITSCKVMLDSQGQSRGFGFVAFSTPENATEAVKEMNGKMIGKKPLYVAVAQSKEERKAIL 986
            ITSCKVMLD QG S+G GFVAF TPE AT A+  MNGKMIG+KPLYVAVAQ KEERKA L
Sbjct: 322  ITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARL 381

Query: 987  EARPXXXXXXXXXXXXXXXXXXXXGLHLSSPLASTPVSQQPYFGQGYAGLVRPQPAGCGY 1166
            +A+                     G H  +P  +    QQ YFGQG  GL+  QPAG G+
Sbjct: 382  QAQ---FAQIRSPGAMTPLQSGVPGFHSGAPRLA---PQQLYFGQGTPGLIPTQPAGYGF 435

Query: 1167 -EQFDFGNRPAMALQYTVPDHLRSQGQPELPIGVRLSETPQQQLHQARP 1310
             +Q   G RP +A  + +P  L+ QGQP   +GVR     QQ  HQ +P
Sbjct: 436  QQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNSQQMQHQQQP 484



 Score = 65.5 bits (158), Expect = 4e-08
 Identities = 32/69 (46%), Positives = 42/69 (60%)
 Frame = +2

Query: 1454 APTLGPQPPYFRQGYSDLVPLEPAGCGYEQQFVFGNLPAMALKYMMPDHLWSEGQPGLPV 1633
            AP L PQ  YF QG   L+P +PAG G++QQ + G  P +A  ++MP  L  +GQPG  +
Sbjct: 408  APRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRM 467

Query: 1634 GVNRSGIPQ 1660
            GV R G  Q
Sbjct: 468  GVRRGGNSQ 476


>emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
          Length = 632

 Score =  312 bits (799), Expect = 2e-82
 Identities = 193/470 (41%), Positives = 268/470 (57%), Gaps = 33/470 (7%)
 Frame = +3

Query: 3    SVTEVDLNDIFSKVGKVSFVRLCRDPITQLSLGRACVYYSDSQHAKIAVESFNSQPIKGR 182
            ++ E  L D+F +V  V  +R+CRD   + SLG A V ++  Q A  A+E  N  P+ G+
Sbjct: 49   AIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGK 108

Query: 183  NITVGFSNTE----RITSHKLFVKHLPPMINTQLLLREIFAQYGTIISC------SGNSK 332
             I + FS+ +    +     +F+K+L P I+ + LL + FA +GT++SC      +G SK
Sbjct: 109  PIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALL-DTFAAFGTVLSCKIALDNNGQSK 167

Query: 333  GCGFVHFEEEQAAMSALAR-HGALVNGVEISVDLFISRQEREELEECRKHNTIYIENMSK 509
            G GFV FE+E+AA +A+ R +G L+N  ++ V LF+  QER       K   +Y++N+S+
Sbjct: 168  GYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNXGNGSPKFTNVYVKNLSE 227

Query: 510  AGYPQSMWSYCLYYGEIVDSCYPKEAT---TDYGFVVFKKHEDAARAIQCLNGRAFGD-Q 677
                  + +    YG I  +   ++A+     +GFV F+  + AA A++ LNG  F D +
Sbjct: 228  TTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDK 287

Query: 678  LWYVAWAWSKSKRNVQ-----------------GTNLYLKNFDDSIDDKRLKELFSEFGT 806
            +WYV  A  KS+R  +                 G NLYLKN DDS++D++L ELFSEFGT
Sbjct: 288  VWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGXNLYLKNLDDSVNDEKLXELFSEFGT 347

Query: 807  ITSCKVMLDSQGQSRGFGFVAFSTPENATEAVKEMNGKMIGKKPLYVAVAQSKEERKAIL 986
            ITSCKVMLD QG S+G GFVAF TPE AT A+  MNGKMIG+KPLYVAVAQ KEERKA L
Sbjct: 348  ITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARL 407

Query: 987  EARPXXXXXXXXXXXXXXXXXXXXGLHLSSPLASTPVSQQPYFGQGYAGLVRPQPAGCGY 1166
            +A+                     G H  +P  +    QQ YFGQG  GL+  QPAG G+
Sbjct: 408  QAQ---FAQIRSPGAMTPLQSGVPGFHSGAPRLA---PQQLYFGQGTPGLIPTQPAGYGF 461

Query: 1167 -EQFDFGNRPAMALQYTVPDHLRSQGQPELPIGVRLSETPQQQLHQARPA 1313
             +Q   G RP +A  + +P  L+ QGQP   +GVR     QQ  HQ +PA
Sbjct: 462  QQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNSQQMQHQQQPA 511



 Score = 65.5 bits (158), Expect = 4e-08
 Identities = 32/69 (46%), Positives = 42/69 (60%)
 Frame = +2

Query: 1454 APTLGPQPPYFRQGYSDLVPLEPAGCGYEQQFVFGNLPAMALKYMMPDHLWSEGQPGLPV 1633
            AP L PQ  YF QG   L+P +PAG G++QQ + G  P +A  ++MP  L  +GQPG  +
Sbjct: 434  APRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRM 493

Query: 1634 GVNRSGIPQ 1660
            GV R G  Q
Sbjct: 494  GVRRGGNSQ 502


>ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
            max]
          Length = 652

 Score =  304 bits (778), Expect = 5e-80
 Identities = 193/482 (40%), Positives = 275/482 (57%), Gaps = 33/482 (6%)
 Frame = +3

Query: 3    SVTEVDLNDIFSKVGKVSFVRLCRDPITQLSLGRACVYYSDSQHAKIAVESFNSQPIKGR 182
            +V E  L D+FS+V +++ +R+CRD   + SLG A V ++++Q A  A+E  N  P+ G+
Sbjct: 45   NVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGK 104

Query: 183  NITVGFSNTE---RITSH-KLFVKHLPPMINTQLLLREIFAQYGTIISC------SGNSK 332
             I + FS  +   R + H  +F+K+L   I+ + L  + FA +GT++SC      SG SK
Sbjct: 105  PIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKAL-HDTFAAFGTVLSCKVALDSSGQSK 163

Query: 333  GCGFVHFEEEQAAMSALAR-HGALVNGVEISVDLFISRQEREELEECRKHNTIYIENMSK 509
            G GFV F+ E+AA +A+ R +G L+N  ++ V LFI RQERE+     K   +Y++N+S+
Sbjct: 164  GYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSE 223

Query: 510  AGYPQSMWSYCLYYGEIVDSCYPKEATTD---YGFVVFKKHEDAARAIQCLNGRAFG-DQ 677
                + +      YG I  +   K+       +GFV F+  + AA A++ LNG     D+
Sbjct: 224  TYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDR 283

Query: 678  LWYVAWAWSKSKRN-----------------VQGTNLYLKNFDDSIDDKRLKELFSEFGT 806
            + YV  A  K++R                  +QG NLYLKN DDS  D++LK+LFSEFGT
Sbjct: 284  VLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGT 343

Query: 807  ITSCKVMLDSQGQSRGFGFVAFSTPENATEAVKEMNGKMIGKKPLYVAVAQSKEERKAIL 986
            ITSCKVM+DS G+S+G GFV+FSTPE A++A+ EMNGK+IG+KPLYVAVAQ KEERKA L
Sbjct: 344  ITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHL 403

Query: 987  EARPXXXXXXXXXXXXXXXXXXXXGLHLSSPLASTPVSQQPYFGQGYAGLVRPQPAGCGY 1166
            +A+                     G+ L  P A     QQ Y+GQG  G + PQPAG  +
Sbjct: 404  QAQ------FAQIRAPGGMAPLPAGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSF 457

Query: 1167 EQFDF-GNRPAMALQYTVPDHLRSQGQPELPIGVRLSETPQQQLHQARPAQVQASGMAHA 1343
            +Q    G RP +A  + +P HL+ QGQ     GVR +   Q         QVQ + M H 
Sbjct: 458  QQQILPGMRPGVAPNFIMPYHLQRQGQLGQRTGVRRNGNFQ---------QVQQNQMLHR 508

Query: 1344 SS 1349
            +S
Sbjct: 509  NS 510



 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 31/75 (41%), Positives = 45/75 (60%)
 Frame = +2

Query: 1427 SGLHLSYPLAPTLGPQPPYFRQGYSDLVPLEPAGCGYEQQFVFGNLPAMALKYMMPDHLW 1606
            +G+ L +P AP L PQ  Y+ QG    +P +PAG  ++QQ + G  P +A  ++MP HL 
Sbjct: 421  AGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSFQQQILPGMRPGVAPNFIMPYHLQ 480

Query: 1607 SEGQPGLPVGVNRSG 1651
             +GQ G   GV R+G
Sbjct: 481  RQGQLGQRTGVRRNG 495


>ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
            max]
          Length = 642

 Score =  303 bits (776), Expect = 9e-80
 Identities = 190/472 (40%), Positives = 272/472 (57%), Gaps = 39/472 (8%)
 Frame = +3

Query: 3    SVTEVDLNDIFSKVGKVSFVRLCRDPITQLSLGRACVYYSDSQHAKIAVESFNSQPIKGR 182
            +V E  L D+FS+V +++ +R+CRD   + SLG A V ++++Q A  A+E  N  P+ G+
Sbjct: 45   NVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGK 104

Query: 183  NITVGFSNTE---RITSH-KLFVKHLPPMINTQLLLREIFAQYGTIISC------SGNSK 332
             I + FS  +   R + H  +F+K+L   I+ + L  + FA +GT++SC      SG SK
Sbjct: 105  PIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKAL-HDTFAAFGTVLSCKVALDSSGQSK 163

Query: 333  GCGFVHFEEEQAAMSALAR-HGALVNGVEISVDLFISRQEREELEECRKHNTIYIENMSK 509
            G GFV F+ E+AA +A+ R +G L+N  ++ V LFI RQERE+     K   +Y++N+S+
Sbjct: 164  GYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSE 223

Query: 510  AGYPQSMWSYCLYYGEIVDSCYPKEATTD---YGFVVFKKHEDAARAIQCLNGRAFG-DQ 677
                + +      YG I  +   K+       +GFV F+  + AA A++ LNG     D+
Sbjct: 224  TYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDR 283

Query: 678  LWYVAWAWSKSKRN-----------------VQGTNLYLKNFDDSIDDKRLKELFSEFGT 806
            + YV  A  K++R                  +QG NLYLKN DDS  D++LK+LFSEFGT
Sbjct: 284  VLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGT 343

Query: 807  ITSCKVMLDSQGQSRGFGFVAFSTPENATEAVKEMNGKMIGKKPLYVAVAQSKEERKAIL 986
            ITSCKVM+DS G+S+G GFV+FSTPE A++A+ EMNGK+IG+KPLYVAVAQ KEERKA L
Sbjct: 344  ITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHL 403

Query: 987  EARPXXXXXXXXXXXXXXXXXXXXGLHLSSPLASTPVSQQPYFGQGYAGLVRPQPAGCGY 1166
            +A+                     G+ L  P A     QQ Y+GQG  G + PQPAG  +
Sbjct: 404  QAQ------FAQIRAPGGMAPLPAGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSF 457

Query: 1167 EQFDF-GNRPAMALQYTVPDHLRSQGQPELPIGVRLS------ETPQQQLHQ 1301
            +Q    G RP +A  + +P HL+ QGQ     GVR +      +  QQ LH+
Sbjct: 458  QQQILPGMRPGVAPNFIMPYHLQRQGQLGQRTGVRRNGNFQQVQQNQQMLHR 509



 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 31/75 (41%), Positives = 45/75 (60%)
 Frame = +2

Query: 1427 SGLHLSYPLAPTLGPQPPYFRQGYSDLVPLEPAGCGYEQQFVFGNLPAMALKYMMPDHLW 1606
            +G+ L +P AP L PQ  Y+ QG    +P +PAG  ++QQ + G  P +A  ++MP HL 
Sbjct: 421  AGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSFQQQILPGMRPGVAPNFIMPYHLQ 480

Query: 1607 SEGQPGLPVGVNRSG 1651
             +GQ G   GV R+G
Sbjct: 481  RQGQLGQRTGVRRNG 495


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