BLASTX nr result
ID: Coptis21_contig00000282
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00000282
(1675 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylat... 315 2e-83
emb|CBI29360.3| unnamed protein product [Vitis vinifera] 315 2e-83
emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera] 312 2e-82
ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-l... 304 5e-80
ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-l... 303 9e-80
>ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 315 bits (808), Expect = 2e-83
Identities = 194/469 (41%), Positives = 269/469 (57%), Gaps = 33/469 (7%)
Frame = +3
Query: 3 SVTEVDLNDIFSKVGKVSFVRLCRDPITQLSLGRACVYYSDSQHAKIAVESFNSQPIKGR 182
++ E L D+F +V V +R+CRD + SLG A V ++ Q A A+E N P+ G+
Sbjct: 483 AIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGK 542
Query: 183 NITVGFSNTE----RITSHKLFVKHLPPMINTQLLLREIFAQYGTIISC------SGNSK 332
I + FS+ + + +F+K+L P I+ + LL + FA +GT++SC +G SK
Sbjct: 543 PIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALL-DTFAAFGTVLSCKIALDNNGQSK 601
Query: 333 GCGFVHFEEEQAAMSALAR-HGALVNGVEISVDLFISRQEREELEECRKHNTIYIENMSK 509
G GFV FE+E+AA +A+ R +G L+N ++ V LF+ QER K +Y++N+S+
Sbjct: 602 GYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSE 661
Query: 510 AGYPQSMWSYCLYYGEIVDSCYPKEAT---TDYGFVVFKKHEDAARAIQCLNGRAFGD-Q 677
+ + YG I + ++A+ +GFV F+ + AA A++ LNG F D +
Sbjct: 662 TTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDK 721
Query: 678 LWYVAWAWSKSKRNVQ-----------------GTNLYLKNFDDSIDDKRLKELFSEFGT 806
+WYV A KS+R + GTNLYLKN DDS++D++LKELFSEFGT
Sbjct: 722 VWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGT 781
Query: 807 ITSCKVMLDSQGQSRGFGFVAFSTPENATEAVKEMNGKMIGKKPLYVAVAQSKEERKAIL 986
ITSCKVMLD QG S+G GFVAF TPE AT A+ MNGKMIG+KPLYVAVAQ KEERKA L
Sbjct: 782 ITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARL 841
Query: 987 EARPXXXXXXXXXXXXXXXXXXXXGLHLSSPLASTPVSQQPYFGQGYAGLVRPQPAGCGY 1166
+A+ G H +P + QQ YFGQG GL+ QPAG G+
Sbjct: 842 QAQ---FAQIRSPGAMTPLQSGVPGFHSGAPRLA---PQQLYFGQGTPGLIPTQPAGYGF 895
Query: 1167 -EQFDFGNRPAMALQYTVPDHLRSQGQPELPIGVRLSETPQQQLHQARP 1310
+Q G RP +A + +P L+ QGQP +GVR QQ HQ +P
Sbjct: 896 QQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNSQQMQHQQQP 944
Score = 65.5 bits (158), Expect = 4e-08
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +2
Query: 1454 APTLGPQPPYFRQGYSDLVPLEPAGCGYEQQFVFGNLPAMALKYMMPDHLWSEGQPGLPV 1633
AP L PQ YF QG L+P +PAG G++QQ + G P +A ++MP L +GQPG +
Sbjct: 868 APRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRM 927
Query: 1634 GVNRSGIPQ 1660
GV R G Q
Sbjct: 928 GVRRGGNSQ 936
>emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 315 bits (808), Expect = 2e-83
Identities = 194/469 (41%), Positives = 269/469 (57%), Gaps = 33/469 (7%)
Frame = +3
Query: 3 SVTEVDLNDIFSKVGKVSFVRLCRDPITQLSLGRACVYYSDSQHAKIAVESFNSQPIKGR 182
++ E L D+F +V V +R+CRD + SLG A V ++ Q A A+E N P+ G+
Sbjct: 23 AIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGK 82
Query: 183 NITVGFSNTE----RITSHKLFVKHLPPMINTQLLLREIFAQYGTIISC------SGNSK 332
I + FS+ + + +F+K+L P I+ + LL + FA +GT++SC +G SK
Sbjct: 83 PIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALL-DTFAAFGTVLSCKIALDNNGQSK 141
Query: 333 GCGFVHFEEEQAAMSALAR-HGALVNGVEISVDLFISRQEREELEECRKHNTIYIENMSK 509
G GFV FE+E+AA +A+ R +G L+N ++ V LF+ QER K +Y++N+S+
Sbjct: 142 GYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSE 201
Query: 510 AGYPQSMWSYCLYYGEIVDSCYPKEAT---TDYGFVVFKKHEDAARAIQCLNGRAFGD-Q 677
+ + YG I + ++A+ +GFV F+ + AA A++ LNG F D +
Sbjct: 202 TTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDK 261
Query: 678 LWYVAWAWSKSKRNVQ-----------------GTNLYLKNFDDSIDDKRLKELFSEFGT 806
+WYV A KS+R + GTNLYLKN DDS++D++LKELFSEFGT
Sbjct: 262 VWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGT 321
Query: 807 ITSCKVMLDSQGQSRGFGFVAFSTPENATEAVKEMNGKMIGKKPLYVAVAQSKEERKAIL 986
ITSCKVMLD QG S+G GFVAF TPE AT A+ MNGKMIG+KPLYVAVAQ KEERKA L
Sbjct: 322 ITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARL 381
Query: 987 EARPXXXXXXXXXXXXXXXXXXXXGLHLSSPLASTPVSQQPYFGQGYAGLVRPQPAGCGY 1166
+A+ G H +P + QQ YFGQG GL+ QPAG G+
Sbjct: 382 QAQ---FAQIRSPGAMTPLQSGVPGFHSGAPRLA---PQQLYFGQGTPGLIPTQPAGYGF 435
Query: 1167 -EQFDFGNRPAMALQYTVPDHLRSQGQPELPIGVRLSETPQQQLHQARP 1310
+Q G RP +A + +P L+ QGQP +GVR QQ HQ +P
Sbjct: 436 QQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNSQQMQHQQQP 484
Score = 65.5 bits (158), Expect = 4e-08
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +2
Query: 1454 APTLGPQPPYFRQGYSDLVPLEPAGCGYEQQFVFGNLPAMALKYMMPDHLWSEGQPGLPV 1633
AP L PQ YF QG L+P +PAG G++QQ + G P +A ++MP L +GQPG +
Sbjct: 408 APRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRM 467
Query: 1634 GVNRSGIPQ 1660
GV R G Q
Sbjct: 468 GVRRGGNSQ 476
>emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 312 bits (799), Expect = 2e-82
Identities = 193/470 (41%), Positives = 268/470 (57%), Gaps = 33/470 (7%)
Frame = +3
Query: 3 SVTEVDLNDIFSKVGKVSFVRLCRDPITQLSLGRACVYYSDSQHAKIAVESFNSQPIKGR 182
++ E L D+F +V V +R+CRD + SLG A V ++ Q A A+E N P+ G+
Sbjct: 49 AIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGK 108
Query: 183 NITVGFSNTE----RITSHKLFVKHLPPMINTQLLLREIFAQYGTIISC------SGNSK 332
I + FS+ + + +F+K+L P I+ + LL + FA +GT++SC +G SK
Sbjct: 109 PIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALL-DTFAAFGTVLSCKIALDNNGQSK 167
Query: 333 GCGFVHFEEEQAAMSALAR-HGALVNGVEISVDLFISRQEREELEECRKHNTIYIENMSK 509
G GFV FE+E+AA +A+ R +G L+N ++ V LF+ QER K +Y++N+S+
Sbjct: 168 GYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNXGNGSPKFTNVYVKNLSE 227
Query: 510 AGYPQSMWSYCLYYGEIVDSCYPKEAT---TDYGFVVFKKHEDAARAIQCLNGRAFGD-Q 677
+ + YG I + ++A+ +GFV F+ + AA A++ LNG F D +
Sbjct: 228 TTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDK 287
Query: 678 LWYVAWAWSKSKRNVQ-----------------GTNLYLKNFDDSIDDKRLKELFSEFGT 806
+WYV A KS+R + G NLYLKN DDS++D++L ELFSEFGT
Sbjct: 288 VWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGXNLYLKNLDDSVNDEKLXELFSEFGT 347
Query: 807 ITSCKVMLDSQGQSRGFGFVAFSTPENATEAVKEMNGKMIGKKPLYVAVAQSKEERKAIL 986
ITSCKVMLD QG S+G GFVAF TPE AT A+ MNGKMIG+KPLYVAVAQ KEERKA L
Sbjct: 348 ITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARL 407
Query: 987 EARPXXXXXXXXXXXXXXXXXXXXGLHLSSPLASTPVSQQPYFGQGYAGLVRPQPAGCGY 1166
+A+ G H +P + QQ YFGQG GL+ QPAG G+
Sbjct: 408 QAQ---FAQIRSPGAMTPLQSGVPGFHSGAPRLA---PQQLYFGQGTPGLIPTQPAGYGF 461
Query: 1167 -EQFDFGNRPAMALQYTVPDHLRSQGQPELPIGVRLSETPQQQLHQARPA 1313
+Q G RP +A + +P L+ QGQP +GVR QQ HQ +PA
Sbjct: 462 QQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNSQQMQHQQQPA 511
Score = 65.5 bits (158), Expect = 4e-08
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +2
Query: 1454 APTLGPQPPYFRQGYSDLVPLEPAGCGYEQQFVFGNLPAMALKYMMPDHLWSEGQPGLPV 1633
AP L PQ YF QG L+P +PAG G++QQ + G P +A ++MP L +GQPG +
Sbjct: 434 APRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVAPNFIMPYQLQRQGQPGQRM 493
Query: 1634 GVNRSGIPQ 1660
GV R G Q
Sbjct: 494 GVRRGGNSQ 502
>ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 304 bits (778), Expect = 5e-80
Identities = 193/482 (40%), Positives = 275/482 (57%), Gaps = 33/482 (6%)
Frame = +3
Query: 3 SVTEVDLNDIFSKVGKVSFVRLCRDPITQLSLGRACVYYSDSQHAKIAVESFNSQPIKGR 182
+V E L D+FS+V +++ +R+CRD + SLG A V ++++Q A A+E N P+ G+
Sbjct: 45 NVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGK 104
Query: 183 NITVGFSNTE---RITSH-KLFVKHLPPMINTQLLLREIFAQYGTIISC------SGNSK 332
I + FS + R + H +F+K+L I+ + L + FA +GT++SC SG SK
Sbjct: 105 PIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKAL-HDTFAAFGTVLSCKVALDSSGQSK 163
Query: 333 GCGFVHFEEEQAAMSALAR-HGALVNGVEISVDLFISRQEREELEECRKHNTIYIENMSK 509
G GFV F+ E+AA +A+ R +G L+N ++ V LFI RQERE+ K +Y++N+S+
Sbjct: 164 GYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSE 223
Query: 510 AGYPQSMWSYCLYYGEIVDSCYPKEATTD---YGFVVFKKHEDAARAIQCLNGRAFG-DQ 677
+ + YG I + K+ +GFV F+ + AA A++ LNG D+
Sbjct: 224 TYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDR 283
Query: 678 LWYVAWAWSKSKRN-----------------VQGTNLYLKNFDDSIDDKRLKELFSEFGT 806
+ YV A K++R +QG NLYLKN DDS D++LK+LFSEFGT
Sbjct: 284 VLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGT 343
Query: 807 ITSCKVMLDSQGQSRGFGFVAFSTPENATEAVKEMNGKMIGKKPLYVAVAQSKEERKAIL 986
ITSCKVM+DS G+S+G GFV+FSTPE A++A+ EMNGK+IG+KPLYVAVAQ KEERKA L
Sbjct: 344 ITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHL 403
Query: 987 EARPXXXXXXXXXXXXXXXXXXXXGLHLSSPLASTPVSQQPYFGQGYAGLVRPQPAGCGY 1166
+A+ G+ L P A QQ Y+GQG G + PQPAG +
Sbjct: 404 QAQ------FAQIRAPGGMAPLPAGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSF 457
Query: 1167 EQFDF-GNRPAMALQYTVPDHLRSQGQPELPIGVRLSETPQQQLHQARPAQVQASGMAHA 1343
+Q G RP +A + +P HL+ QGQ GVR + Q QVQ + M H
Sbjct: 458 QQQILPGMRPGVAPNFIMPYHLQRQGQLGQRTGVRRNGNFQ---------QVQQNQMLHR 508
Query: 1344 SS 1349
+S
Sbjct: 509 NS 510
Score = 63.2 bits (152), Expect = 2e-07
Identities = 31/75 (41%), Positives = 45/75 (60%)
Frame = +2
Query: 1427 SGLHLSYPLAPTLGPQPPYFRQGYSDLVPLEPAGCGYEQQFVFGNLPAMALKYMMPDHLW 1606
+G+ L +P AP L PQ Y+ QG +P +PAG ++QQ + G P +A ++MP HL
Sbjct: 421 AGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSFQQQILPGMRPGVAPNFIMPYHLQ 480
Query: 1607 SEGQPGLPVGVNRSG 1651
+GQ G GV R+G
Sbjct: 481 RQGQLGQRTGVRRNG 495
>ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 303 bits (776), Expect = 9e-80
Identities = 190/472 (40%), Positives = 272/472 (57%), Gaps = 39/472 (8%)
Frame = +3
Query: 3 SVTEVDLNDIFSKVGKVSFVRLCRDPITQLSLGRACVYYSDSQHAKIAVESFNSQPIKGR 182
+V E L D+FS+V +++ +R+CRD + SLG A V ++++Q A A+E N P+ G+
Sbjct: 45 NVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGK 104
Query: 183 NITVGFSNTE---RITSH-KLFVKHLPPMINTQLLLREIFAQYGTIISC------SGNSK 332
I + FS + R + H +F+K+L I+ + L + FA +GT++SC SG SK
Sbjct: 105 PIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKAL-HDTFAAFGTVLSCKVALDSSGQSK 163
Query: 333 GCGFVHFEEEQAAMSALAR-HGALVNGVEISVDLFISRQEREELEECRKHNTIYIENMSK 509
G GFV F+ E+AA +A+ R +G L+N ++ V LFI RQERE+ K +Y++N+S+
Sbjct: 164 GYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSE 223
Query: 510 AGYPQSMWSYCLYYGEIVDSCYPKEATTD---YGFVVFKKHEDAARAIQCLNGRAFG-DQ 677
+ + YG I + K+ +GFV F+ + AA A++ LNG D+
Sbjct: 224 TYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDR 283
Query: 678 LWYVAWAWSKSKRN-----------------VQGTNLYLKNFDDSIDDKRLKELFSEFGT 806
+ YV A K++R +QG NLYLKN DDS D++LK+LFSEFGT
Sbjct: 284 VLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGT 343
Query: 807 ITSCKVMLDSQGQSRGFGFVAFSTPENATEAVKEMNGKMIGKKPLYVAVAQSKEERKAIL 986
ITSCKVM+DS G+S+G GFV+FSTPE A++A+ EMNGK+IG+KPLYVAVAQ KEERKA L
Sbjct: 344 ITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHL 403
Query: 987 EARPXXXXXXXXXXXXXXXXXXXXGLHLSSPLASTPVSQQPYFGQGYAGLVRPQPAGCGY 1166
+A+ G+ L P A QQ Y+GQG G + PQPAG +
Sbjct: 404 QAQ------FAQIRAPGGMAPLPAGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSF 457
Query: 1167 EQFDF-GNRPAMALQYTVPDHLRSQGQPELPIGVRLS------ETPQQQLHQ 1301
+Q G RP +A + +P HL+ QGQ GVR + + QQ LH+
Sbjct: 458 QQQILPGMRPGVAPNFIMPYHLQRQGQLGQRTGVRRNGNFQQVQQNQQMLHR 509
Score = 63.2 bits (152), Expect = 2e-07
Identities = 31/75 (41%), Positives = 45/75 (60%)
Frame = +2
Query: 1427 SGLHLSYPLAPTLGPQPPYFRQGYSDLVPLEPAGCGYEQQFVFGNLPAMALKYMMPDHLW 1606
+G+ L +P AP L PQ Y+ QG +P +PAG ++QQ + G P +A ++MP HL
Sbjct: 421 AGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSFQQQILPGMRPGVAPNFIMPYHLQ 480
Query: 1607 SEGQPGLPVGVNRSG 1651
+GQ G GV R+G
Sbjct: 481 RQGQLGQRTGVRRNG 495