BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00000269
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containi...    75   4e-12
ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containi...    71   1e-10
ref|XP_003618546.1| Pentatricopeptide repeat-containing protein ...    67   1e-09
ref|XP_002324074.1| predicted protein [Populus trichocarpa] gi|2...    65   6e-09
ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containi...    59   3e-07

>ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
 Frame = +3

Query: 3   GDKSHPQTQDVYLMLDEMSQKLRLVGYIPNNXXXXXXXXXXXXDNVNLKEEKERVLFSQ* 182
           GDKSHP+T++VY MLDEM  +LRL GY PN             D++  +EEKE+ LFS  
Sbjct: 506 GDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHS 565

Query: 183 EVGHLLW------TRMLLHI*RNLKICQDCHCA 263
           E   + +        + LHI +NL+ICQDCH A
Sbjct: 566 EKLAICFGLISTGPGVPLHIFKNLRICQDCHSA 598


>ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 41/93 (44%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
 Frame = +3

Query: 3   GDKSHPQTQDVYLMLDEMSQKLRLVGYIPNNXXXXXXXXXXXXDNVNLKEEKERVLFSQ* 182
           GDKSHP+T D+Y+ LD+M  KLRL GY+PN             D +   EE E+VLF+  
Sbjct: 503 GDKSHPRTADIYMKLDDMICKLRLAGYVPNTNCQVLFGCSNGDDCMEAFEEVEQVLFTHS 562

Query: 183 EVGHLLWTRML------LHI*RNLKICQDCHCA 263
           E   L +  M       L I +NL+ICQDCH A
Sbjct: 563 EKLALCFGLMSTPSSSPLCIFKNLRICQDCHSA 595


>ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355493561|gb|AES74764.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 637

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 39/93 (41%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
 Frame = +3

Query: 3   GDKSHPQTQDVYLMLDEMSQKLRLVGYIPNNXXXXXXXXXXXXDNVNLKEEKERVLFSQ* 182
           GDKSH +T ++Y+ LDEM  +LR  GY+PN             D     EE E+VLF+  
Sbjct: 511 GDKSHTRTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNRDDCSESLEEVEQVLFTHS 570

Query: 183 EVGHLLWTRML------LHI*RNLKICQDCHCA 263
           E   L +  M       LHI +NL+ICQDCH A
Sbjct: 571 EKLALCFGLMSTPSGSPLHIFKNLRICQDCHSA 603


>ref|XP_002324074.1| predicted protein [Populus trichocarpa] gi|222867076|gb|EEF04207.1|
           predicted protein [Populus trichocarpa]
          Length = 636

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
 Frame = +3

Query: 3   GDKSHPQTQDVYLMLDEMSQKLRLVGYIPNNXXXXXXXXXXXXDNVNLKEEKERVLFSQ* 182
           GDKSHP T+++Y  L+ M Q+LRL GY+PN              +    EEKE+ LF   
Sbjct: 510 GDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGREGSSEEMEEKEQALFLHS 569

Query: 183 E-----VGHL-LWTRMLLHI*RNLKICQDCHCA 263
           E      GH+       L+I +NL+ICQDCH A
Sbjct: 570 EKLAVCFGHISTKPGAPLYIFKNLRICQDCHSA 602


>ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449511814|ref|XP_004164061.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = +3

Query: 3   GDKSHPQTQDVYLMLDEMSQKLRLVGYIPNNXXXXXXXXXXXXDNVNLKEEKER--VLFS 176
           GDKSHPQT+++Y+ L EM +KL + G+IP+                 L+   ER  + F 
Sbjct: 563 GDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFG 622

Query: 177 Q*EVGHLLWTRMLLHI*RNLKICQDCHCAAPKHGHV*NFTVSASD 311
              + H    R++    +NL+IC DCH       H+ N  +   D
Sbjct: 623 LLNIKHGSPIRII----KNLRICNDCHAVTKLLSHIYNREIIIRD 663