BLASTX nr result

ID: Coptis21_contig00000235 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00000235
         (1705 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268516.1| PREDICTED: pentatricopeptide repeat-containi...   816   0.0  
emb|CBI31083.3| unnamed protein product [Vitis vinifera]              806   0.0  
ref|XP_004135752.1| PREDICTED: pentatricopeptide repeat-containi...   780   0.0  
ref|XP_002533784.1| pentatricopeptide repeat-containing protein,...   780   0.0  
ref|XP_003539000.1| PREDICTED: pentatricopeptide repeat-containi...   769   0.0  

>ref|XP_002268516.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
            chloroplastic-like [Vitis vinifera]
          Length = 846

 Score =  816 bits (2109), Expect = 0.0
 Identities = 388/567 (68%), Positives = 469/567 (82%)
 Frame = -2

Query: 1704 FEVFTDVRGRPRVSWMEMEERIQNLAKWLNGTDINMPEWLFSKMIHSARIKFSDHSVLRV 1525
            FE F D+  +  VS MEMEERIQ LAK LNG DI+MPEW+FSKM+ SA+I+F+DHS+LRV
Sbjct: 262  FEAFNDITVKKPVSKMEMEERIQKLAKLLNGADIDMPEWMFSKMMRSAKIRFTDHSILRV 321

Query: 1524 IQILGTLGNWRRVLQIIQWLQSRERFKSYKTRYIYTAALDVLGKAKRPVEALNVFHSMRE 1345
            IQILG LGNWRR LQ+++WLQ RERFKS+K RYIYTAALDVLGKA+RPVEALNVF++M +
Sbjct: 322  IQILGKLGNWRRALQVLEWLQLRERFKSHKLRYIYTAALDVLGKARRPVEALNVFYAMLQ 381

Query: 1344 GFSSYPDLAAYRCIAVTLGQAGHMKELFDVIDCMRSPPQHKFKTGLIEKWDPRLEPDIIV 1165
              SSYPDL AY CIAVTLGQAGHMKELFDVIDCMRSPP+ KFKTG +EKWDPRLEPDI+V
Sbjct: 382  QMSSYPDLVAYHCIAVTLGQAGHMKELFDVIDCMRSPPRKKFKTGALEKWDPRLEPDIVV 441

Query: 1164 YNAVLNACAQRKQWEGAFWVLQQIKQQGLQPSSTTYGLIMEVMFACEKYNLVYEFFKKVE 985
            YNAVLNAC +RKQWEGAFWVLQQ+KQQ  +PS TTYGL+MEVMF C KYNLV+EFF KV+
Sbjct: 442  YNAVLNACVRRKQWEGAFWVLQQLKQQSQKPSITTYGLVMEVMFVCGKYNLVHEFFWKVQ 501

Query: 984  KITIPNSLNYKVLVNTLWKEGQADEAVLAVKDMERRGVVGSASLYYDLARCLCSAGRCQE 805
            K +IPN+L YKVLVNTLW+EG+ DEAVLAV+DME+RGVVGSA+LYYDLARCLCSAGRCQE
Sbjct: 502  KSSIPNALTYKVLVNTLWREGKTDEAVLAVQDMEKRGVVGSAALYYDLARCLCSAGRCQE 561

Query: 804  ALMQMDKICKVAHKPLVVTYTGLIQACLDAGSVQDGAFIFKQMQEFCSPNLVTCNIMLKA 625
            ALMQ++KICKVA+KPLVVTYTGLIQ CLD+G++Q+ AFIF QM EFCSPNL+TCN+MLKA
Sbjct: 562  ALMQIEKICKVANKPLVVTYTGLIQVCLDSGNIQNAAFIFNQMHEFCSPNLITCNVMLKA 621

Query: 624  YLEHKMFEEAKDLFQKMLDGSCHITKRSDCKNTVTPDSYSFNTMLDSCAAENKWDYFTYC 445
            YLEH+MFEEAK LF KML    HI+ +SD  + V PD Y+FNTM+D+C AE +W    Y 
Sbjct: 622  YLEHRMFEEAKGLFGKMLGDGNHISSKSDYNDRVLPDIYTFNTMIDACNAEKRWHDLEYV 681

Query: 444  FQQMLHRGYNFNTKRHQRMILEACRAGKVELLETTWKHLVRANRVPPPPLVKERFCMKLE 265
            +++ML  G++FN KRH R+IL+A RAGK ELLETTWK L    RV PPPL+KERFCMKLE
Sbjct: 682  YERMLRHGFHFNAKRHLRIILDASRAGKEELLETTWKSLAGEGRV-PPPLIKERFCMKLE 740

Query: 264  KNDYDTAISSISSHPPNELRLQAFSEKGWLDLLKANTDRFQKDTITSLTHKLSILVAGNE 85
            K D   A+SSI+ H  NEL+ + FS++ WL+L   N  RFQ +++  L H+ S+ +A  +
Sbjct: 741  KGDCAAAVSSITGHHMNELQ-EPFSKRAWLNLFTENAGRFQTESLVELMHEASVRIARAD 799

Query: 84   QPLPAIKNLISSCKEYIRTQTLAAEIN 4
             P P ++NL++SCKE++RT    + ++
Sbjct: 800  MPNPVLQNLLASCKEFLRTHMTVSSVS 826


>emb|CBI31083.3| unnamed protein product [Vitis vinifera]
          Length = 647

 Score =  806 bits (2083), Expect = 0.0
 Identities = 382/552 (69%), Positives = 461/552 (83%)
 Frame = -2

Query: 1659 MEMEERIQNLAKWLNGTDINMPEWLFSKMIHSARIKFSDHSVLRVIQILGTLGNWRRVLQ 1480
            MEMEERIQ LAK LNG DI+MPEW+FSKM+ SA+I+F+DHS+LRVIQILG LGNWRR LQ
Sbjct: 1    MEMEERIQKLAKLLNGADIDMPEWMFSKMMRSAKIRFTDHSILRVIQILGKLGNWRRALQ 60

Query: 1479 IIQWLQSRERFKSYKTRYIYTAALDVLGKAKRPVEALNVFHSMREGFSSYPDLAAYRCIA 1300
            +++WLQ RERFKS+K RYIYTAALDVLGKA+RPVEALNVF++M +  SSYPDL AY CIA
Sbjct: 61   VLEWLQLRERFKSHKLRYIYTAALDVLGKARRPVEALNVFYAMLQQMSSYPDLVAYHCIA 120

Query: 1299 VTLGQAGHMKELFDVIDCMRSPPQHKFKTGLIEKWDPRLEPDIIVYNAVLNACAQRKQWE 1120
            VTLGQAGHMKELFDVIDCMRSPP+ KFKTG +EKWDPRLEPDI+VYNAVLNAC +RKQWE
Sbjct: 121  VTLGQAGHMKELFDVIDCMRSPPRKKFKTGALEKWDPRLEPDIVVYNAVLNACVRRKQWE 180

Query: 1119 GAFWVLQQIKQQGLQPSSTTYGLIMEVMFACEKYNLVYEFFKKVEKITIPNSLNYKVLVN 940
            GAFWVLQQ+KQQ  +PS TTYGL+MEVMF C KYNLV+EFF KV+K +IPN+L YKVLVN
Sbjct: 181  GAFWVLQQLKQQSQKPSITTYGLVMEVMFVCGKYNLVHEFFWKVQKSSIPNALTYKVLVN 240

Query: 939  TLWKEGQADEAVLAVKDMERRGVVGSASLYYDLARCLCSAGRCQEALMQMDKICKVAHKP 760
            TLW+EG+ DEAVLAV+DME+RGVVGSA+LYYDLARCLCSAGRCQEALMQ++KICKVA+KP
Sbjct: 241  TLWREGKTDEAVLAVQDMEKRGVVGSAALYYDLARCLCSAGRCQEALMQIEKICKVANKP 300

Query: 759  LVVTYTGLIQACLDAGSVQDGAFIFKQMQEFCSPNLVTCNIMLKAYLEHKMFEEAKDLFQ 580
            LVVTYTGLIQ CLD+G++Q+ AFIF QM EFCSPNL+TCN+MLKAYLEH+MFEEAK LF 
Sbjct: 301  LVVTYTGLIQVCLDSGNIQNAAFIFNQMHEFCSPNLITCNVMLKAYLEHRMFEEAKGLFG 360

Query: 579  KMLDGSCHITKRSDCKNTVTPDSYSFNTMLDSCAAENKWDYFTYCFQQMLHRGYNFNTKR 400
            KML    HI+ +SD  + V PD Y+FNTM+D+C AE +W    Y +++ML  G++FN KR
Sbjct: 361  KMLGDGNHISSKSDYNDRVLPDIYTFNTMIDACNAEKRWHDLEYVYERMLRHGFHFNAKR 420

Query: 399  HQRMILEACRAGKVELLETTWKHLVRANRVPPPPLVKERFCMKLEKNDYDTAISSISSHP 220
            H R+IL+A RAGK ELLETTWK L    RV PPPL+KERFCMKLEK D   A+SSI+ H 
Sbjct: 421  HLRIILDASRAGKEELLETTWKSLAGEGRV-PPPLIKERFCMKLEKGDCAAAVSSITGHH 479

Query: 219  PNELRLQAFSEKGWLDLLKANTDRFQKDTITSLTHKLSILVAGNEQPLPAIKNLISSCKE 40
             NEL+ + FS++ WL+L   N  RFQ +++  L H+ S+ +A  + P P ++NL++SCKE
Sbjct: 480  MNELQ-EPFSKRAWLNLFTENAGRFQTESLVELMHEASVRIARADMPNPVLQNLLASCKE 538

Query: 39   YIRTQTLAAEIN 4
            ++RT    + ++
Sbjct: 539  FLRTHMTVSSVS 550


>ref|XP_004135752.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
            chloroplastic-like [Cucumis sativus]
          Length = 902

 Score =  780 bits (2014), Expect = 0.0
 Identities = 378/565 (66%), Positives = 460/565 (81%)
 Frame = -2

Query: 1704 FEVFTDVRGRPRVSWMEMEERIQNLAKWLNGTDINMPEWLFSKMIHSARIKFSDHSVLRV 1525
            F+ F D+  +PRVS MEMEERIQ L+K LNG DI+MPEW+FS+M+ SA+I++SDHS+LRV
Sbjct: 335  FDAF-DIMDKPRVSKMEMEERIQMLSKRLNGADIDMPEWMFSQMMRSAKIRYSDHSILRV 393

Query: 1524 IQILGTLGNWRRVLQIIQWLQSRERFKSYKTRYIYTAALDVLGKAKRPVEALNVFHSMRE 1345
            IQ+LG LGNWRRVLQII+WLQ RERFKS+K R+IYT ALDVLGKA+RPVEALNVFH+M+E
Sbjct: 394  IQVLGKLGNWRRVLQIIEWLQMRERFKSHKLRFIYTTALDVLGKARRPVEALNVFHAMQE 453

Query: 1344 GFSSYPDLAAYRCIAVTLGQAGHMKELFDVIDCMRSPPQHKFKTGLIEKWDPRLEPDIIV 1165
             FSSYPDL AY  IAVTLGQAG+M+ELFDVID MRSPP+ KFKTG++EKWDPRL+PDI++
Sbjct: 454  HFSSYPDLVAYHSIAVTLGQAGYMRELFDVIDSMRSPPKKKFKTGVLEKWDPRLQPDIVI 513

Query: 1164 YNAVLNACAQRKQWEGAFWVLQQIKQQGLQPSSTTYGLIMEVMFACEKYNLVYEFFKKVE 985
            YNAVLNAC +RK  EGAFWVLQ++K+Q LQPS++TYGL+MEVM  C KYNLV+EFF+KV+
Sbjct: 514  YNAVLNACVKRKNLEGAFWVLQELKKQSLQPSTSTYGLVMEVMLECGKYNLVHEFFRKVQ 573

Query: 984  KITIPNSLNYKVLVNTLWKEGQADEAVLAVKDMERRGVVGSASLYYDLARCLCSAGRCQE 805
            K +IPN+L YKVLVNTLWKEG+ DEAVLA+++ME RG+VGSA+LYYD ARCLCSAGRC+E
Sbjct: 574  KSSIPNALTYKVLVNTLWKEGKTDEAVLAIENMEIRGIVGSAALYYDFARCLCSAGRCKE 633

Query: 804  ALMQMDKICKVAHKPLVVTYTGLIQACLDAGSVQDGAFIFKQMQEFCSPNLVTCNIMLKA 625
            ALMQM+KICKVA+KPLVVTYTGLIQACLD+  +Q   +IF  M+ FCSPNLVT NI+LK 
Sbjct: 634  ALMQMEKICKVANKPLVVTYTGLIQACLDSKDLQSAVYIFNHMKAFCSPNLVTYNILLKG 693

Query: 624  YLEHKMFEEAKDLFQKMLDGSCHITKRSDCKNTVTPDSYSFNTMLDSCAAENKWDYFTYC 445
            YLEH MFEEA++LFQ + +   +I+  SD ++ V PD Y FNTMLD+  AE +WD F+Y 
Sbjct: 694  YLEHGMFEEARELFQNLSEQRRNISTVSDYRDRVLPDIYMFNTMLDASFAEKRWDDFSYF 753

Query: 444  FQQMLHRGYNFNTKRHQRMILEACRAGKVELLETTWKHLVRANRVPPPPLVKERFCMKLE 265
            + QM   GY+FN KRH RMILEA R GK ELLETTWKHL +A+R PPPPL+KERFCMKL 
Sbjct: 754  YNQMFLYGYHFNPKRHLRMILEAARGGKDELLETTWKHLAQADRTPPPPLLKERFCMKLA 813

Query: 264  KNDYDTAISSISSHPPNELRLQAFSEKGWLDLLKANTDRFQKDTITSLTHKLSILVAGNE 85
            + DY  A+SSI SH  N      FSE  WL+LLK    RF +DT+  L HK+ +++  NE
Sbjct: 814  RGDYSEALSSIWSH--NSGDAHHFSESAWLNLLKEK--RFPRDTVIELIHKVGMVLTRNE 869

Query: 84   QPLPAIKNLISSCKEYIRTQTLAAE 10
             P P  KNL+ SCKE+ RT+   A+
Sbjct: 870  SPNPVFKNLLLSCKEFCRTRISLAD 894


>ref|XP_002533784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223526285|gb|EEF28597.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 856

 Score =  780 bits (2013), Expect = 0.0
 Identities = 370/564 (65%), Positives = 464/564 (82%)
 Frame = -2

Query: 1701 EVFTDVRGRPRVSWMEMEERIQNLAKWLNGTDINMPEWLFSKMIHSARIKFSDHSVLRVI 1522
            E + +  GRP+ S  E+E+R+Q LAK LNG DI+MPEW+FSKM+ SARIK++DHSVLR+I
Sbjct: 280  EEYNNFTGRPQNSKREVEDRLQKLAKCLNGADIDMPEWMFSKMMRSARIKYTDHSVLRII 339

Query: 1521 QILGTLGNWRRVLQIIQWLQSRERFKSYKTRYIYTAALDVLGKAKRPVEALNVFHSMREG 1342
            QILG LGNWRRVLQ+I+WLQ RERFKS++ R IYT AL+VLGKA+RPVEALNVFH M++ 
Sbjct: 340  QILGKLGNWRRVLQVIEWLQMRERFKSHRLRNIYTTALNVLGKAQRPVEALNVFHVMQQQ 399

Query: 1341 FSSYPDLAAYRCIAVTLGQAGHMKELFDVIDCMRSPPQHKFKTGLIEKWDPRLEPDIIVY 1162
             SSYPDL AY CIAVTLGQAGHM++LFDVID MRSPP+ KFK   + KWDPRLEPDI+VY
Sbjct: 400  MSSYPDLVAYHCIAVTLGQAGHMEQLFDVIDSMRSPPKKKFKMAAVHKWDPRLEPDIVVY 459

Query: 1161 NAVLNACAQRKQWEGAFWVLQQIKQQGLQPSSTTYGLIMEVMFACEKYNLVYEFFKKVEK 982
            NAVLNAC QRKQWEGAFWVLQQ+KQQGLQPS+TTYGLIMEVMFAC KYNLV+EFF+KV+K
Sbjct: 460  NAVLNACVQRKQWEGAFWVLQQLKQQGLQPSTTTYGLIMEVMFACGKYNLVHEFFRKVQK 519

Query: 981  ITIPNSLNYKVLVNTLWKEGQADEAVLAVKDMERRGVVGSASLYYDLARCLCSAGRCQEA 802
             +IPN+L YKVLVNTLW+EG+ DEAVLAV++MERRG+VG A+LYYDLARCLCSAGRCQEA
Sbjct: 520  SSIPNALVYKVLVNTLWREGKTDEAVLAVEEMERRGIVGFAALYYDLARCLCSAGRCQEA 579

Query: 801  LMQMDKICKVAHKPLVVTYTGLIQACLDAGSVQDGAFIFKQMQEFCSPNLVTCNIMLKAY 622
            L+Q++KIC+VA+KPLVVTYTGLIQACLD+G++ +  +IF QM+ FCSPNLVT N+MLKAY
Sbjct: 580  LLQIEKICRVANKPLVVTYTGLIQACLDSGNIHNAVYIFNQMKHFCSPNLVTFNVMLKAY 639

Query: 621  LEHKMFEEAKDLFQKMLDGSCHITKRSDCKNTVTPDSYSFNTMLDSCAAENKWDYFTYCF 442
             EH +FE+AK+LF KM + S HI    D K  V PD Y+FNTMLD+C +E  WD F Y +
Sbjct: 640  FEHGLFEDAKELFHKMTEDSNHIRGNHDYKVRVIPDIYTFNTMLDACISEKSWDDFEYVY 699

Query: 441  QQMLHRGYNFNTKRHQRMILEACRAGKVELLETTWKHLVRANRVPPPPLVKERFCMKLEK 262
            ++MLH G++FN KRH RMIL+A RAGKVE LE TWKHL RA+R+PPP L+KERF + LEK
Sbjct: 700  RRMLHHGFHFNGKRHLRMILDASRAGKVEPLEMTWKHLARADRIPPPNLIKERFRIMLEK 759

Query: 261  NDYDTAISSISSHPPNELRLQAFSEKGWLDLLKANTDRFQKDTITSLTHKLSILVAGNEQ 82
            +D  +A++ I+++P  E    AF +  WL+L K N ++ ++DT+  L H++S+LV     
Sbjct: 760  DDCKSALACITTNPMGE--SPAFHKVAWLNLFKENAEQIRRDTLIQLKHEVSMLV---NP 814

Query: 81   PLPAIKNLISSCKEYIRTQTLAAE 10
            P P ++NL++SC +++ +Q + +E
Sbjct: 815  PDPVLQNLLASCNDFLNSQVIVSE 838


>ref|XP_003539000.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
            chloroplastic-like [Glycine max]
          Length = 893

 Score =  769 bits (1985), Expect = 0.0
 Identities = 363/554 (65%), Positives = 454/554 (81%)
 Frame = -2

Query: 1677 RPRVSWMEMEERIQNLAKWLNGTDINMPEWLFSKMIHSARIKFSDHSVLRVIQILGTLGN 1498
            + + S  EMEE+IQ LA  LNG DIN+PEW+FSKMI SAR+KF+D+++ R+I ILG LGN
Sbjct: 333  KSQFSHKEMEEKIQKLANSLNGADINLPEWMFSKMIRSARLKFNDYAITRIIIILGKLGN 392

Query: 1497 WRRVLQIIQWLQSRERFKSYKTRYIYTAALDVLGKAKRPVEALNVFHSMREGFSSYPDLA 1318
            WRRV+Q+I+WLQ RERFKS+K R+IYTAALD LGK++RPVEALN+FH+M++  SSYPDL 
Sbjct: 393  WRRVIQVIEWLQKRERFKSHKLRHIYTAALDALGKSRRPVEALNIFHAMQQQMSSYPDLV 452

Query: 1317 AYRCIAVTLGQAGHMKELFDVIDCMRSPPQHKFKTGLIEKWDPRLEPDIIVYNAVLNACA 1138
            AY  IAVTLGQAGHMKELFDVID MRSPP+ KFKTG+ E WDPRLEPDI+VY+AVLNAC 
Sbjct: 453  AYHSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGIFENWDPRLEPDIVVYHAVLNACV 512

Query: 1137 QRKQWEGAFWVLQQIKQQGLQPSSTTYGLIMEVMFACEKYNLVYEFFKKVEKITIPNSLN 958
            +RKQWEGAFWVLQQ+K+QG  PS+TTYGL+MEVM +C KYNLV+EFF+K++K   PNSL 
Sbjct: 513  RRKQWEGAFWVLQQLKKQGQPPSATTYGLVMEVMLSCGKYNLVHEFFRKLQKSFSPNSLT 572

Query: 957  YKVLVNTLWKEGQADEAVLAVKDMERRGVVGSASLYYDLARCLCSAGRCQEALMQMDKIC 778
            Y+VLVNTLW+EG+ DEA+LAV++MERRG+VGSASLYYDLARCL +AGR  EAL Q+DKIC
Sbjct: 573  YRVLVNTLWQEGKPDEAILAVQEMERRGIVGSASLYYDLARCLSAAGRSHEALKQIDKIC 632

Query: 777  KVAHKPLVVTYTGLIQACLDAGSVQDGAFIFKQMQEFCSPNLVTCNIMLKAYLEHKMFEE 598
            KVA+KPLVVTYTGL+QA LDAG++QDGA+IF++M+E C+PNLVTCNI+LKAYLEH MF+E
Sbjct: 633  KVANKPLVVTYTGLMQASLDAGNIQDGAYIFEKMKEICAPNLVTCNIILKAYLEHGMFQE 692

Query: 597  AKDLFQKMLDGSCHITKRSDCKNTVTPDSYSFNTMLDSCAAENKWDYFTYCFQQMLHRGY 418
            AK LF++M + +  +   +D K  V PD+YSFNTMLD+C AE +WDYF + +Q+ML+ GY
Sbjct: 693  AKVLFEQMSENANRLRGNTDYKMLVVPDTYSFNTMLDACVAEKRWDYFDHVYQRMLYHGY 752

Query: 417  NFNTKRHQRMILEACRAGKVELLETTWKHLVRANRVPPPPLVKERFCMKLEKNDYDTAIS 238
            +FN KRH RMILEA +AGK   LE TWKHL   +R+PP PL+KERFC KLEK+DY  A++
Sbjct: 753  HFNPKRHLRMILEASKAGKERPLEITWKHLTDTDRIPPAPLIKERFCAKLEKDDYVAALT 812

Query: 237  SISSHPPNELRLQAFSEKGWLDLLKANTDRFQKDTITSLTHKLSILVAGNEQPLPAIKNL 58
             I ++PP +  LQ FS+  WL L K N+ RFQKDTI  L ++ S +V+ N  P P ++ L
Sbjct: 813  CIINNPPKD--LQPFSKSSWLKLFKENSQRFQKDTIVGLMNEASNIVSNNSFPNPTLEYL 870

Query: 57   ISSCKEYIRTQTLA 16
            I SCKE++    L+
Sbjct: 871  IQSCKEFLFATVLS 884


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