BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00000217
         (616 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_175268.1| 50S ribosomal protein L18 [Arabidopsis thaliana...   222   4e-56
ref|XP_002891426.1| ribosomal protein L18 family protein [Arabid...   222   4e-56
ref|XP_002509912.1| 50S ribosomal protein L18, chloroplast precu...   216   3e-54
ref|XP_002314349.1| predicted protein [Populus trichocarpa] gi|1...   214   1e-53
ref|XP_002334329.1| predicted protein [Populus trichocarpa] gi|2...   212   4e-53

>ref|NP_175268.1| 50S ribosomal protein L18 [Arabidopsis thaliana]
           gi|73621536|sp|Q9SX68.1|RK18_ARATH RecName: Full=50S
           ribosomal protein L18, chloroplastic; AltName:
           Full=CL18; Flags: Precursor
           gi|5733872|gb|AAD49760.1|AC007932_8 Similar to 50S
           Ribosomal protein L18 from Thermotoga maritima
           gb|AE001798. ESTs gb|AI993387, gb|T75951 and gb|T22182
           come from this gene [Arabidopsis thaliana]
           gi|12484209|gb|AAG54003.1|AF336922_1 putative ribosomal
           protein L18 [Arabidopsis thaliana]
           gi|110740956|dbj|BAE98573.1| hypothetical protein
           [Arabidopsis thaliana] gi|332194156|gb|AEE32277.1| 50S
           ribosomal protein L18 [Arabidopsis thaliana]
          Length = 170

 Score =  222 bits (566), Expect = 4e-56
 Identities = 110/128 (85%), Positives = 120/128 (93%), Gaps = 2/128 (1%)
 Frame = +3

Query: 36  SLVFQARTRT--EDRQARHARIRKKVEGTTERPRLCVFRSNKHMYVQVIDDSKMHTLASA 209
           S+V +A+T+T  EDR ARH+RIRKKV GTTERPRLCVFRSNKH+YVQVIDD+KMHTLASA
Sbjct: 43  SMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASA 102

Query: 210 STVQKPIAEEFDYTSGPTIEIAKKVGEVIAKACLEKGIQKVAFDRGGYPYHGRIEALADA 389
           ST QKPI+EEFDYTSGPTIE+AKKVGEVIAK+CLEKGI KVAFDRGGYPYHGRIEALA A
Sbjct: 103 STKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAA 162

Query: 390 AREHGLQF 413
           AREHGLQF
Sbjct: 163 AREHGLQF 170


>ref|XP_002891426.1| ribosomal protein L18 family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297337268|gb|EFH67685.1| ribosomal protein
           L18 family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 170

 Score =  222 bits (566), Expect = 4e-56
 Identities = 110/128 (85%), Positives = 120/128 (93%), Gaps = 2/128 (1%)
 Frame = +3

Query: 36  SLVFQARTRT--EDRQARHARIRKKVEGTTERPRLCVFRSNKHMYVQVIDDSKMHTLASA 209
           S+V +A+T+T  EDR ARH+RIRKKV GTTERPRLCVFRSNKH+YVQVIDD+KMHTLASA
Sbjct: 43  SMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASA 102

Query: 210 STVQKPIAEEFDYTSGPTIEIAKKVGEVIAKACLEKGIQKVAFDRGGYPYHGRIEALADA 389
           ST QKPI+EEFDYTSGPTIE+AKKVGEVIAK+CLEKGI KVAFDRGGYPYHGRIEALA A
Sbjct: 103 STKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAA 162

Query: 390 AREHGLQF 413
           AREHGLQF
Sbjct: 163 AREHGLQF 170


>ref|XP_002509912.1| 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus
           communis] gi|223549811|gb|EEF51299.1| 50S ribosomal
           protein L18, chloroplast precursor, putative [Ricinus
           communis]
          Length = 164

 Score =  216 bits (550), Expect = 3e-54
 Identities = 109/136 (80%), Positives = 120/136 (88%), Gaps = 2/136 (1%)
 Frame = +3

Query: 12  PKHQQRPTSLVFQARTRT--EDRQARHARIRKKVEGTTERPRLCVFRSNKHMYVQVIDDS 185
           P   Q P  L  +A T+T  E+R ARH RIRKKVEGT ERPRL VFRSNKH+YVQVIDDS
Sbjct: 29  PTPIQPPRFLRIEANTKTRRENRTARHVRIRKKVEGTPERPRLSVFRSNKHLYVQVIDDS 88

Query: 186 KMHTLASASTVQKPIAEEFDYTSGPTIEIAKKVGEVIAKACLEKGIQKVAFDRGGYPYHG 365
           KMHTLASAST+QKPI+EEFDY+SGPT+E+AKKVGEVIAK+CLEKGI KVAFDRGGYPYHG
Sbjct: 89  KMHTLASASTMQKPISEEFDYSSGPTLEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHG 148

Query: 366 RIEALADAAREHGLQF 413
           RIEALADAARE+GLQF
Sbjct: 149 RIEALADAARENGLQF 164


>ref|XP_002314349.1| predicted protein [Populus trichocarpa] gi|118487426|gb|ABK95541.1|
           unknown [Populus trichocarpa]
           gi|222863389|gb|EEF00520.1| predicted protein [Populus
           trichocarpa]
          Length = 165

 Score =  214 bits (545), Expect = 1e-53
 Identities = 101/122 (82%), Positives = 115/122 (94%)
 Frame = +3

Query: 48  QARTRTEDRQARHARIRKKVEGTTERPRLCVFRSNKHMYVQVIDDSKMHTLASASTVQKP 227
           +A+TR EDR ARH RIRKKVEGT +RPRLCVFRSNKH+YVQVIDD+KMHTLASAST+QKP
Sbjct: 44  KAKTRREDRTARHIRIRKKVEGTPDRPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKP 103

Query: 228 IAEEFDYTSGPTIEIAKKVGEVIAKACLEKGIQKVAFDRGGYPYHGRIEALADAAREHGL 407
            A++FDY+SGPTI++AKKVGEVIAK+CLEKGI KVAFDRGGYPYHGR+ ALADAARE+GL
Sbjct: 104 FAQDFDYSSGPTIDVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVAALADAARENGL 163

Query: 408 QF 413
           QF
Sbjct: 164 QF 165


>ref|XP_002334329.1| predicted protein [Populus trichocarpa] gi|222871392|gb|EEF08523.1|
           predicted protein [Populus trichocarpa]
          Length = 165

 Score =  212 bits (540), Expect = 4e-53
 Identities = 105/140 (75%), Positives = 120/140 (85%), Gaps = 5/140 (3%)
 Frame = +3

Query: 9   APKHQQRPTSLVF-----QARTRTEDRQARHARIRKKVEGTTERPRLCVFRSNKHMYVQV 173
           A   Q+   SL F     + +TR EDR ARH RIRKKVEGT +RPRLCVFRSNKH+YVQV
Sbjct: 26  AAAQQRTSPSLSFVPFEAKPQTRREDRTARHIRIRKKVEGTPDRPRLCVFRSNKHLYVQV 85

Query: 174 IDDSKMHTLASASTVQKPIAEEFDYTSGPTIEIAKKVGEVIAKACLEKGIQKVAFDRGGY 353
           IDD+KMHTLASAST+QKP A++FDY+SGPTI++AKKVGEVIAK+CLEKGI KVAFDRGGY
Sbjct: 86  IDDTKMHTLASASTMQKPFAQDFDYSSGPTIDVAKKVGEVIAKSCLEKGITKVAFDRGGY 145

Query: 354 PYHGRIEALADAAREHGLQF 413
           PYHGR+ ALADAARE+GLQF
Sbjct: 146 PYHGRVAALADAARENGLQF 165