BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00000099
         (2935 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522097.1| Heterogeneous nuclear ribonucleoprotein A1, ...   163   2e-62
dbj|BAE71267.1| hypothetical protein [Trifolium pratense]             161   7e-60
dbj|BAE71253.1| hypothetical protein [Trifolium pratense]             161   7e-60
ref|NP_181639.1| RNA recognition motif-containing protein [Arabi...   156   9e-60
emb|CBI24383.3| unnamed protein product [Vitis vinifera]              159   2e-59

>ref|XP_002522097.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
           communis] gi|223538696|gb|EEF40297.1| Heterogeneous
           nuclear ribonucleoprotein A1, putative [Ricinus
           communis]
          Length = 478

 Score =  163 bits (413), Expect(2) = 2e-62
 Identities = 80/141 (56%), Positives = 102/141 (72%)
 Frame = +3

Query: 114 QNDSNSDSKSQEENVDVSKILEPFTKEQLIELLKTAVTTNPKLIDQINLIADSDPTQRKL 293
           Q D N+D    +++  +  +LEPF KEQL+ LLK A   +  + D+I  IAD+DP  RK+
Sbjct: 81  QGDVNND---YDDDDPIENLLEPFGKEQLVNLLKEASDKHRDVADRIRKIADADPAHRKI 137

Query: 294 FIHGLGWETSSEKLGEYFSQYGEIEDCNVVTDKITGKSKGYGFICFKTRKDAEKALKEPQ 473
           F+HGLGW++++E L   F QYGEIEDC  V DK++GKSKGYGFI FK R  A KAL+EPQ
Sbjct: 138 FVHGLGWDSTAETLTNAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKKRSGARKALEEPQ 197

Query: 474 KKIESRMTACQLASAGPVMTN 536
           KKI +RMTACQLAS GPV T+
Sbjct: 198 KKIGNRMTACQLASMGPVPTS 218



 Score =  105 bits (262), Expect(2) = 2e-62
 Identities = 49/75 (65%), Positives = 61/75 (81%)
 Frame = +2

Query: 656 NVHSDISSEKLLAFFTKYGEIEEGPLGVDKMTGKFKGFALFIYKTVEGAKKALEEQTKNF 835
           NV +D+  ++L +FF+K+GEIEEGPLG+DK+TGK KGF LF+YK+VE AKKALEE  KNF
Sbjct: 244 NVGADLDPQQLTSFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSVESAKKALEEPHKNF 303

Query: 836 EGHQLVCQRATDNHK 880
           EGH L CQ+A D  K
Sbjct: 304 EGHILHCQKAVDGPK 318



 Score = 74.7 bits (182), Expect = 1e-10
 Identities = 37/92 (40%), Positives = 57/92 (61%)
 Frame = +3

Query: 270 SDPTQRKLFIHGLGWETSSEKLGEYFSQYGEIEDCNVVTDKITGKSKGYGFICFKTRKDA 449
           S+ TQRK++I  +G +   ++L  +FS++GEIE+  +  DK+TGK KG+    +K+ + A
Sbjct: 233 SEYTQRKIYISNVGADLDPQQLTSFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSVESA 292

Query: 450 EKALKEPQKKIESRMTACQLASAGPVMTNLQQ 545
           +KAL+EP K  E  +  CQ A  GP     QQ
Sbjct: 293 KKALEEPHKNFEGHILHCQKAVDGPKHGKSQQ 324


>dbj|BAE71267.1| hypothetical protein [Trifolium pratense]
          Length = 482

 Score =  161 bits (407), Expect(2) = 7e-60
 Identities = 78/132 (59%), Positives = 96/132 (72%)
 Frame = +3

Query: 147 EENVDVSKILEPFTKEQLIELLKTAVTTNPKLIDQINLIADSDPTQRKLFIHGLGWETSS 326
           E++  + K++EPFTKEQ+  LL  A + +  + D+I  IAD D + RK+F+HGLGW+T+S
Sbjct: 81  EDDEPIQKLIEPFTKEQIASLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTS 140

Query: 327 EKLGEYFSQYGEIEDCNVVTDKITGKSKGYGFICFKTRKDAEKALKEPQKKIESRMTACQ 506
             L   FSQYGEIEDC  VTDK++GKSKGYGFI FK R  A  ALKEPQKKI +RMTACQ
Sbjct: 141 ATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQ 200

Query: 507 LASAGPVMTNLQ 542
           LAS GPV    Q
Sbjct: 201 LASIGPVQQTPQ 212



 Score = 99.0 bits (245), Expect(2) = 7e-60
 Identities = 46/75 (61%), Positives = 56/75 (74%)
 Frame = +2

Query: 656 NVHSDISSEKLLAFFTKYGEIEEGPLGVDKMTGKFKGFALFIYKTVEGAKKALEEQTKNF 835
           NV  D+   KL  FF+++GEIEEGPLG+DK+TGK KGF LF+YK+ E A++ALEE  K F
Sbjct: 233 NVGPDLDGSKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEF 292

Query: 836 EGHQLVCQRATDNHK 880
           EGH L CQRA D  K
Sbjct: 293 EGHILHCQRAIDGPK 307



 Score = 77.0 bits (188), Expect = 3e-11
 Identities = 39/104 (37%), Positives = 62/104 (59%)
 Frame = +3

Query: 234 PKLIDQINLIADSDPTQRKLFIHGLGWETSSEKLGEYFSQYGEIEDCNVVTDKITGKSKG 413
           P+L+ Q      S+ TQRK+++  +G +    KL  +FS++GEIE+  +  DK+TGK KG
Sbjct: 215 PQLVPQ-----GSEYTQRKIYVSNVGPDLDGSKLFGFFSRFGEIEEGPLGLDKVTGKPKG 269

Query: 414 YGFICFKTRKDAEKALKEPQKKIESRMTACQLASAGPVMTNLQQ 545
           +    +K+ + A +AL+EP K+ E  +  CQ A  GP +   QQ
Sbjct: 270 FCLFVYKSAESARRALEEPHKEFEGHILHCQRAIDGPKVVKTQQ 313


>dbj|BAE71253.1| hypothetical protein [Trifolium pratense]
          Length = 414

 Score =  161 bits (407), Expect(2) = 7e-60
 Identities = 78/132 (59%), Positives = 96/132 (72%)
 Frame = +3

Query: 147 EENVDVSKILEPFTKEQLIELLKTAVTTNPKLIDQINLIADSDPTQRKLFIHGLGWETSS 326
           E++  + K++EPFTKEQ+  LL  A + +  + D+I  IAD D + RK+F+HGLGW+T+S
Sbjct: 13  EDDEPIQKLIEPFTKEQIASLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTS 72

Query: 327 EKLGEYFSQYGEIEDCNVVTDKITGKSKGYGFICFKTRKDAEKALKEPQKKIESRMTACQ 506
             L   FSQYGEIEDC  VTDK++GKSKGYGFI FK R  A  ALKEPQKKI +RMTACQ
Sbjct: 73  ATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQ 132

Query: 507 LASAGPVMTNLQ 542
           LAS GPV    Q
Sbjct: 133 LASIGPVQQTPQ 144



 Score = 99.0 bits (245), Expect(2) = 7e-60
 Identities = 46/75 (61%), Positives = 56/75 (74%)
 Frame = +2

Query: 656 NVHSDISSEKLLAFFTKYGEIEEGPLGVDKMTGKFKGFALFIYKTVEGAKKALEEQTKNF 835
           NV  D+   KL  FF+++GEIEEGPLG+DK+TGK KGF LF+YK+ E A++ALEE  K F
Sbjct: 165 NVGPDLDGSKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEF 224

Query: 836 EGHQLVCQRATDNHK 880
           EGH L CQRA D  K
Sbjct: 225 EGHILHCQRAIDGPK 239



 Score = 77.0 bits (188), Expect = 3e-11
 Identities = 39/104 (37%), Positives = 62/104 (59%)
 Frame = +3

Query: 234 PKLIDQINLIADSDPTQRKLFIHGLGWETSSEKLGEYFSQYGEIEDCNVVTDKITGKSKG 413
           P+L+ Q      S+ TQRK+++  +G +    KL  +FS++GEIE+  +  DK+TGK KG
Sbjct: 147 PQLVPQ-----GSEYTQRKIYVSNVGPDLDGSKLFGFFSRFGEIEEGPLGLDKVTGKPKG 201

Query: 414 YGFICFKTRKDAEKALKEPQKKIESRMTACQLASAGPVMTNLQQ 545
           +    +K+ + A +AL+EP K+ E  +  CQ A  GP +   QQ
Sbjct: 202 FCLFVYKSAESARRALEEPHKEFEGHILHCQRAIDGPKVVKTQQ 245


>ref|NP_181639.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|145331087|ref|NP_001078035.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
           gi|16612302|gb|AAL27512.1|AF439844_1 At2g41060/T3K9.17
           [Arabidopsis thaliana] gi|3402711|gb|AAD12005.1|
           putative RNA-binding protein [Arabidopsis thaliana]
           gi|22137136|gb|AAM91413.1| At2g41060/T3K9.17
           [Arabidopsis thaliana] gi|110742573|dbj|BAE99200.1|
           putative RNA-binding protein [Arabidopsis thaliana]
           gi|330254826|gb|AEC09920.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
           gi|330254827|gb|AEC09921.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 451

 Score =  156 bits (395), Expect(2) = 9e-60
 Identities = 72/137 (52%), Positives = 98/137 (71%)
 Frame = +3

Query: 126 NSDSKSQEENVDVSKILEPFTKEQLIELLKTAVTTNPKLIDQINLIADSDPTQRKLFIHG 305
           N  ++  +E   +  +LEPF+K+QL+ LLK A   +  + ++I ++AD D   RK+F+HG
Sbjct: 75  NQGNEDDDEEEPIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHG 134

Query: 306 LGWETSSEKLGEYFSQYGEIEDCNVVTDKITGKSKGYGFICFKTRKDAEKALKEPQKKIE 485
           LGW+T ++ L + F QYGEIEDC  V DK++G+SKGYGFI FK+R  A  ALK+PQKKI 
Sbjct: 135 LGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIG 194

Query: 486 SRMTACQLASAGPVMTN 536
           +RMTACQLAS GPV  N
Sbjct: 195 TRMTACQLASIGPVQGN 211



 Score =  103 bits (256), Expect(2) = 9e-60
 Identities = 48/76 (63%), Positives = 60/76 (78%)
 Frame = +2

Query: 656 NVHSDISSEKLLAFFTKYGEIEEGPLGVDKMTGKFKGFALFIYKTVEGAKKALEEQTKNF 835
           NV +DI  +KLL FF+++GEIEEGPLG+DK TG+ KGFALF+Y+++E AKKALEE  K F
Sbjct: 233 NVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTF 292

Query: 836 EGHQLVCQRATDNHKQ 883
           EGH L C +A D  KQ
Sbjct: 293 EGHVLHCHKANDGPKQ 308



 Score = 68.2 bits (165), Expect = 1e-08
 Identities = 31/88 (35%), Positives = 52/88 (59%)
 Frame = +3

Query: 282 QRKLFIHGLGWETSSEKLGEYFSQYGEIEDCNVVTDKITGKSKGYGFICFKTRKDAEKAL 461
           QRK+++  +  +   +KL E+FS++GEIE+  +  DK TG+ KG+    +++ + A+KAL
Sbjct: 226 QRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285

Query: 462 KEPQKKIESRMTACQLASAGPVMTNLQQ 545
           +EP K  E  +  C  A+ GP      Q
Sbjct: 286 EEPHKTFEGHVLHCHKANDGPKQVKQHQ 313


>emb|CBI24383.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  159 bits (402), Expect(2) = 2e-59
 Identities = 73/125 (58%), Positives = 95/125 (76%)
 Frame = +3

Query: 162 VSKILEPFTKEQLIELLKTAVTTNPKLIDQINLIADSDPTQRKLFIHGLGWETSSEKLGE 341
           + K+L+PF K+Q+I LLK A  +NP  + +I    +SDP  RK+F+HGLGW+ ++E L  
Sbjct: 171 IRKLLQPFGKDQIIALLKEAADSNPATLSKILPAVESDPVHRKIFVHGLGWDATNETLTS 230

Query: 342 YFSQYGEIEDCNVVTDKITGKSKGYGFICFKTRKDAEKALKEPQKKIESRMTACQLASAG 521
            F QYG+IE+CNVVTDKITG+SKGYGF+ FKTR  A KALK+PQKKI +RM AC LA+AG
Sbjct: 231 AFKQYGQIEECNVVTDKITGRSKGYGFVLFKTRSGARKALKQPQKKIGNRMAACHLAAAG 290

Query: 522 PVMTN 536
           P  +N
Sbjct: 291 PSGSN 295



 Score = 99.4 bits (246), Expect(2) = 2e-59
 Identities = 80/234 (34%), Positives = 99/234 (42%), Gaps = 23/234 (9%)
 Frame = +2

Query: 653  GNVHSDISSEKLLAFFTKYGEIEEGPLGVDKMTGKFKGFALFIYKTVEGAKKALEEQTKN 832
            GNV   IS+EKL  FF K+GEIE+GPLG DK TGKF+GFA+ ++KT EG K+ALEE  K 
Sbjct: 310  GNVGPQISAEKLRTFFAKFGEIEDGPLGFDKATGKFRGFAIIVFKTAEGMKRALEEPIKT 369

Query: 833  FEGHQLVCQR---ATDNHKQKGAAGNVSLKTPTI-----XXXXXXXXXXXXXXTAPNAVM 988
            FE  +L C R    T   +Q+  AG+     P                       P  V+
Sbjct: 370  FESCKLQCSRKVAKTTPVQQQAVAGSTGATLPPSNYQLQAYQMGLNQGLIGQNVNPQGVL 429

Query: 989  ASQGLAV---NPAFYGQGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGVPQVMPGYG 1159
                 AV   NP   G                                 FG PQ+  G  
Sbjct: 430  VGHNQAVGILNPVL-GAAAALNQPGLSQGFAGGLSQPVNRAPPVGLSAGFG-PQL--GMN 485

Query: 1160 MVNPG----YQNPQAHQA-NPYQSGPVGQ-------GSAPRPNSAMGPKGGGYR 1285
             +NPG    Y +P A Q    YQS  +GQ         A RP+  +G K G YR
Sbjct: 486  SINPGVLGAYGSPAAFQGLGAYQSSQLGQSPASAAAAGAGRPHPGVGSKKGKYR 539



 Score = 69.7 bits (169), Expect = 4e-09
 Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
 Frame = +3

Query: 255 NLIADSDPTQRKLFIHGLGWETSSEKLGEYFSQYGEIEDCNVVTDKITGKSKGYGFICFK 434
           N  A +D  +R+L++  +G + S+EKL  +F+++GEIED  +  DK TGK +G+  I FK
Sbjct: 295 NPAAGADVNERRLYVGNVGPQISAEKLRTFFAKFGEIEDGPLGFDKATGKFRGFAIIVFK 354

Query: 435 TRKDAEKALKEPQKKIESRMTAC--QLASAGPV 527
           T +  ++AL+EP K  ES    C  ++A   PV
Sbjct: 355 TAEGMKRALEEPIKTFESCKLQCSRKVAKTTPV 387