BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00000048
         (1886 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase ...   381   e-173
ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase...   378   e-173
ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase...   372   e-171
emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]   372   e-171
gb|ADD60243.1| rubisco activase [Glycine max]                         375   e-170

>ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
           precursor, putative [Ricinus communis]
           gi|223536483|gb|EEF38130.1| Ribulose bisphosphate
           carboxylase/oxygenase activase 1, chloroplast precursor,
           putative [Ricinus communis]
          Length = 473

 Score =  381 bits (978), Expect(2) = e-173
 Identities = 183/237 (77%), Positives = 204/237 (86%)
 Frame = -2

Query: 871 NPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGI 692
           NPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCTGI
Sbjct: 259 NPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGI 318

Query: 691 FKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDGIGRKLVNSKDG 512
           FKTD +APEDV+K+VDTFPGQSIDFFGALRARVYDDEVRKWI GVGV+ IG+ LVNSK+G
Sbjct: 319 FKTDGVAPEDVVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGGVGVEKIGKSLVNSKEG 378

Query: 511 PPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNEASLGEANADAINSGNFFXXX 332
           PPTFEQPKMT+EKLLEYG M+VQEQ+NVKRVQLADKY++EA+LGEAN D+I  G F+   
Sbjct: 379 PPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYMSEAALGEANQDSIERGTFY--- 435

Query: 331 XXXXXXXXXXXXXXXXXXXXGKAAQQVHVPVPEGCTDPSAQNFDPTARSDNGSCLYE 161
                               GKAAQQV++PVPEGCTDP+AQNFDPTARSD+GSC Y+
Sbjct: 436 --------------------GKAAQQVNIPVPEGCTDPTAQNFDPTARSDDGSCTYK 472



 Score =  256 bits (654), Expect(2) = e-173
 Identities = 120/129 (93%), Positives = 127/129 (98%)
 Frame = -3

Query: 1350 SYDYISRGLREYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG 1171
            SY+Y+S GLR+YN DNNMDGFYIAPAFMDKLVVHITKNFMTLPNIK+PLILGIWGGKGQG
Sbjct: 110  SYEYLSTGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKIPLILGIWGGKGQG 169

Query: 1170 KSFQCELVFAKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL 991
            KSFQCELVFAKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCLFINDL
Sbjct: 170  KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDL 229

Query: 990  DAGAGRMGG 964
            DAGAGRMGG
Sbjct: 230  DAGAGRMGG 238



 Score = 62.0 bits (149), Expect = 5e-07
 Identities = 37/75 (49%), Positives = 45/75 (60%)
 Frame = -1

Query: 1727 MAAPFSTVGAVNSALVNLPSSNTGASLPTSSFLGSNLKKVISSGYTNQKVSSRSFKVVXX 1548
            MAA  STVGAVN   + L  S  G+S+PTS+F GS+LKK+ S  ++  K SS SFKVV  
Sbjct: 1    MAATISTVGAVNRTPLALNGSGAGSSVPTSAFFGSSLKKLNSPRFS--KFSSGSFKVVSE 58

Query: 1547 XXXXXXKGQDRWKGL 1503
                     DRW GL
Sbjct: 59   YDEEKQTSADRWGGL 73


>ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
           chloroplastic-like [Vitis vinifera]
           gi|297740331|emb|CBI30513.3| unnamed protein product
           [Vitis vinifera]
          Length = 474

 Score =  378 bits (970), Expect(2) = e-173
 Identities = 181/237 (76%), Positives = 207/237 (87%)
 Frame = -2

Query: 871 NPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGI 692
           NPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCTGI
Sbjct: 260 NPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGI 319

Query: 691 FKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDGIGRKLVNSKDG 512
           F++DNI  ED++K+VDTFPGQSIDFFGALRARVYDDEVRKW++ VGV+GIG+KLVNSK+G
Sbjct: 320 FRSDNIPKEDMVKLVDTFPGQSIDFFGALRARVYDDEVRKWVASVGVEGIGKKLVNSKEG 379

Query: 511 PPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNEASLGEANADAINSGNFFXXX 332
           PPTFE+PKMT++KLLEYG M+VQEQ+NVKRVQLADKYL+EA+LG+AN DAI SG+F+   
Sbjct: 380 PPTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKSGSFY--- 436

Query: 331 XXXXXXXXXXXXXXXXXXXXGKAAQQVHVPVPEGCTDPSAQNFDPTARSDNGSCLYE 161
                               GKAAQQV++PVPEGCTDPSA NFDPTARSD+GSCLY+
Sbjct: 437 --------------------GKAAQQVNLPVPEGCTDPSANNFDPTARSDDGSCLYQ 473



 Score =  258 bits (658), Expect(2) = e-173
 Identities = 123/129 (95%), Positives = 126/129 (97%)
 Frame = -3

Query: 1350 SYDYISRGLREYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG 1171
            SYDYIS GLR+YN DN MDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG
Sbjct: 111  SYDYISTGLRQYNLDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG 170

Query: 1170 KSFQCELVFAKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL 991
            KSFQCELVFAKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL
Sbjct: 171  KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL 230

Query: 990  DAGAGRMGG 964
            DAGAGR+GG
Sbjct: 231  DAGAGRLGG 239



 Score = 70.5 bits (171), Expect = 1e-09
 Identities = 39/75 (52%), Positives = 51/75 (68%)
 Frame = -1

Query: 1727 MAAPFSTVGAVNSALVNLPSSNTGASLPTSSFLGSNLKKVISSGYTNQKVSSRSFKVVXX 1548
            MAA  ST+GAVN A +NL  S TGAS+P+S+FLG++LKKV SS   + + SS +FKVV  
Sbjct: 1    MAATISTLGAVNRAPLNLNGSGTGASVPSSAFLGNSLKKV-SSKIAHPRTSSGNFKVVAE 59

Query: 1547 XXXXXXKGQDRWKGL 1503
                    +D+WKGL
Sbjct: 60   VDEEKQTSKDKWKGL 74


>ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
           chloroplastic isoform 1 [Vitis vinifera]
           gi|297746032|emb|CBI16088.3| unnamed protein product
           [Vitis vinifera]
          Length = 472

 Score =  372 bits (956), Expect(2) = e-171
 Identities = 181/236 (76%), Positives = 199/236 (84%)
 Frame = -2

Query: 871 NPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGI 692
           NPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP R+DRIGVC GI
Sbjct: 260 NPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPNREDRIGVCKGI 319

Query: 691 FKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDGIGRKLVNSKDG 512
           F++DN+  +D++KIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVD IG+KLVNSK+G
Sbjct: 320 FRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDFIGKKLVNSKEG 379

Query: 511 PPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNEASLGEANADAINSGNFFXXX 332
           PPTFEQPKMT+EKLLEYG M+V EQ+NVKRVQLADKYL+EA+LG+AN D+I  G F+   
Sbjct: 380 PPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSEAALGDANVDSIERGTFY--- 436

Query: 331 XXXXXXXXXXXXXXXXXXXXGKAAQQVHVPVPEGCTDPSAQNFDPTARSDNGSCLY 164
                               GKAAQQV VPVPEGCTDPSA NFDPTARSDNGSC Y
Sbjct: 437 --------------------GKAAQQVGVPVPEGCTDPSAANFDPTARSDNGSCQY 472



 Score =  256 bits (655), Expect(2) = e-171
 Identities = 121/129 (93%), Positives = 127/129 (98%)
 Frame = -3

Query: 1350 SYDYISRGLREYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG 1171
            SY+Y+S GLR+YN DNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG
Sbjct: 111  SYEYLSTGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG 170

Query: 1170 KSFQCELVFAKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL 991
            KSFQCELVF+KMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL
Sbjct: 171  KSFQCELVFSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL 230

Query: 990  DAGAGRMGG 964
            DAGAGR+GG
Sbjct: 231  DAGAGRLGG 239



 Score = 73.2 bits (178), Expect = 2e-10
 Identities = 40/75 (53%), Positives = 52/75 (69%)
 Frame = -1

Query: 1727 MAAPFSTVGAVNSALVNLPSSNTGASLPTSSFLGSNLKKVISSGYTNQKVSSRSFKVVXX 1548
            MA   ST+GAVN   ++L SS TGAS+P+S+F GS+LKKV SS +T+ K++S SFKVV  
Sbjct: 1    MATTVSTIGAVNRTPLSLNSSGTGASVPSSAFFGSSLKKV-SSRFTHPKIASGSFKVVAE 59

Query: 1547 XXXXXXKGQDRWKGL 1503
                    +DRWKGL
Sbjct: 60   IDENEQTEKDRWKGL 74


>emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]
          Length = 472

 Score =  372 bits (956), Expect(2) = e-171
 Identities = 181/236 (76%), Positives = 199/236 (84%)
 Frame = -2

Query: 871 NPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGI 692
           NPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP R+DRIGVC GI
Sbjct: 260 NPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPNREDRIGVCKGI 319

Query: 691 FKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDGIGRKLVNSKDG 512
           F++DN+  +D++KIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVD IG+KLVNSK+G
Sbjct: 320 FRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDFIGKKLVNSKEG 379

Query: 511 PPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNEASLGEANADAINSGNFFXXX 332
           PPTFEQPKMT+EKLLEYG M+V EQ+NVKRVQLADKYL+EA+LG+AN D+I  G F+   
Sbjct: 380 PPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSEAALGDANVDSIERGTFY--- 436

Query: 331 XXXXXXXXXXXXXXXXXXXXGKAAQQVHVPVPEGCTDPSAQNFDPTARSDNGSCLY 164
                               GKAAQQV VPVPEGCTDPSA NFDPTARSDNGSC Y
Sbjct: 437 --------------------GKAAQQVGVPVPEGCTDPSAANFDPTARSDNGSCQY 472



 Score =  256 bits (655), Expect(2) = e-171
 Identities = 121/129 (93%), Positives = 127/129 (98%)
 Frame = -3

Query: 1350 SYDYISRGLREYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG 1171
            SY+Y+S GLR+YN DNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG
Sbjct: 111  SYEYLSTGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG 170

Query: 1170 KSFQCELVFAKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL 991
            KSFQCELVF+KMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL
Sbjct: 171  KSFQCELVFSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL 230

Query: 990  DAGAGRMGG 964
            DAGAGR+GG
Sbjct: 231  DAGAGRLGG 239



 Score = 71.2 bits (173), Expect = 9e-10
 Identities = 39/75 (52%), Positives = 51/75 (68%)
 Frame = -1

Query: 1727 MAAPFSTVGAVNSALVNLPSSNTGASLPTSSFLGSNLKKVISSGYTNQKVSSRSFKVVXX 1548
            MA   ST+GAVN   ++L SS TG S+P+S+F GS+LKKV SS +T+ K++S SFKVV  
Sbjct: 1    MATTVSTIGAVNRTPLSLNSSGTGXSVPSSAFFGSSLKKV-SSRFTHPKIASGSFKVVAE 59

Query: 1547 XXXXXXKGQDRWKGL 1503
                    +DRWKGL
Sbjct: 60   IDENEQTEKDRWKGL 74


>gb|ADD60243.1| rubisco activase [Glycine max]
          Length = 474

 Score =  375 bits (962), Expect(2) = e-170
 Identities = 181/237 (76%), Positives = 202/237 (85%)
 Frame = -2

Query: 871 NPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGI 692
           NPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVC GI
Sbjct: 260 NPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGI 319

Query: 691 FKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDGIGRKLVNSKDG 512
           F+TD +  ED+IK+VDTF GQSIDFFGALRARVYDDEVRKWISGVGV+ IG+KLVNSK+G
Sbjct: 320 FRTDGVLKEDIIKLVDTFLGQSIDFFGALRARVYDDEVRKWISGVGVENIGKKLVNSKEG 379

Query: 511 PPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNEASLGEANADAINSGNFFXXX 332
           PPTFEQPKMT+ KLLEYG M+VQEQ+NVKRVQLADKYLNEA+LG+AN DAI +GNF+   
Sbjct: 380 PPTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYLNEAALGDANDDAIKTGNFY--- 436

Query: 331 XXXXXXXXXXXXXXXXXXXXGKAAQQVHVPVPEGCTDPSAQNFDPTARSDNGSCLYE 161
                               G+ AQQVHVPVPEGCTDP+A+N+DPTARSD+GSC Y+
Sbjct: 437 --------------------GQGAQQVHVPVPEGCTDPTAENYDPTARSDDGSCTYK 473



 Score =  252 bits (644), Expect(2) = e-170
 Identities = 119/129 (92%), Positives = 125/129 (96%)
 Frame = -3

Query: 1350 SYDYISRGLREYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG 1171
            SYDYIS GLR+YN DN MDGFYIAPAFMDK+VVHITKNF+ LPNIKVPLILGIWGGKGQG
Sbjct: 111  SYDYISAGLRQYNLDNTMDGFYIAPAFMDKIVVHITKNFLNLPNIKVPLILGIWGGKGQG 170

Query: 1170 KSFQCELVFAKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL 991
            KSFQCELVFAKMG+NPI+MSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL
Sbjct: 171  KSFQCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDL 230

Query: 990  DAGAGRMGG 964
            DAGAGR+GG
Sbjct: 231  DAGAGRLGG 239