BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00000045
         (494 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, I...    75   5e-16
ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycin...    75   2e-15
ref|XP_002323257.1| predicted protein [Populus trichocarpa] gi|2...    71   4e-15
ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ri...    72   5e-15
emb|CBI30093.3| unnamed protein product [Vitis vinifera]               74   3e-14

>ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
           gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1-like
           [Cucumis sativus]
          Length = 227

 Score = 75.5 bits (184), Expect(2) = 5e-16
 Identities = 38/65 (58%), Positives = 42/65 (64%)
 Frame = -2

Query: 490 KTETFQITDLLVNIMKHVLMPXXXXXXXXXXXXXXXKYSVGENQIPRMLETDAVARYYGL 311
           K E FQITDLLVNI KH L P               +YS+ E Q+PRML TDA+ARYYGL
Sbjct: 143 KVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGL 202

Query: 310 EKGQV 296
           EKGQV
Sbjct: 203 EKGQV 207



 Score = 33.5 bits (75), Expect(2) = 5e-16
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -3

Query: 231 QVVKVTSDDDVAESHATYRCV 169
           QVVKVT D D+  +H TYRCV
Sbjct: 206 QVVKVTYDGDMTRAHITYRCV 226


>ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
           gi|255627335|gb|ACU14012.1| unknown [Glycine max]
          Length = 237

 Score = 75.5 bits (184), Expect(2) = 2e-15
 Identities = 38/65 (58%), Positives = 44/65 (67%)
 Frame = -2

Query: 490 KTETFQITDLLVNIMKHVLMPXXXXXXXXXXXXXXXKYSVGENQIPRMLETDAVARYYGL 311
           K E FQITDLLVNI KHVL P               KY++ E Q+PRML+TDA+ARYYGL
Sbjct: 153 KVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIARYYGL 212

Query: 310 EKGQV 296
           E+GQV
Sbjct: 213 ERGQV 217



 Score = 31.2 bits (69), Expect(2) = 2e-15
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -3

Query: 231 QVVKVTSDDDVAESHATYRCV 169
           QVVKVT   +V + H TYRCV
Sbjct: 216 QVVKVTYSGEVTQMHVTYRCV 236


>ref|XP_002323257.1| predicted protein [Populus trichocarpa] gi|222867887|gb|EEF05018.1|
           predicted protein [Populus trichocarpa]
          Length = 216

 Score = 70.9 bits (172), Expect(2) = 4e-15
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = -2

Query: 490 KTETFQITDLLVNIMKHVLMPXXXXXXXXXXXXXXXKYSVGENQIPRMLETDAVARYYGL 311
           K E FQITDLLVNI KH+L P               KYS+ E Q+PR+L+ DA++RYYGL
Sbjct: 132 KIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLLKKDAISRYYGL 191

Query: 310 EKGQV 296
           E+GQV
Sbjct: 192 ERGQV 196



 Score = 35.0 bits (79), Expect(2) = 4e-15
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = -3

Query: 231 QVVKVTSDDDVAESHATYRCV 169
           QVVKVT D D+  SH TYRCV
Sbjct: 195 QVVKVTYDGDITGSHVTYRCV 215


>ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
           gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase
           II, putative [Ricinus communis]
          Length = 238

 Score = 71.6 bits (174), Expect(2) = 5e-15
 Identities = 36/65 (55%), Positives = 40/65 (61%)
 Frame = -2

Query: 490 KTETFQITDLLVNIMKHVLMPXXXXXXXXXXXXXXXKYSVGENQIPRMLETDAVARYYGL 311
           K E FQITDLLVNI KHVL P                Y + E Q+PR+L  DA+ARYYGL
Sbjct: 154 KVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRLLRKDAIARYYGL 213

Query: 310 EKGQV 296
           EKGQV
Sbjct: 214 EKGQV 218



 Score = 33.9 bits (76), Expect(2) = 5e-15
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -3

Query: 231 QVVKVTSDDDVAESHATYRCV 169
           QVVKVT   ++ ESH TYRCV
Sbjct: 217 QVVKVTYSGEITESHVTYRCV 237


>emb|CBI30093.3| unnamed protein product [Vitis vinifera]
          Length = 330

 Score = 73.9 bits (180), Expect(2) = 3e-14
 Identities = 38/65 (58%), Positives = 43/65 (66%)
 Frame = -2

Query: 490 KTETFQITDLLVNIMKHVLMPXXXXXXXXXXXXXXXKYSVGENQIPRMLETDAVARYYGL 311
           + E FQITDLLVNI KHVL P               KYS+ E Q+PRML+ DA+ARYYGL
Sbjct: 246 QVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQDAIARYYGL 305

Query: 310 EKGQV 296
           EKGQV
Sbjct: 306 EKGQV 310



 Score = 29.3 bits (64), Expect(2) = 3e-14
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 231 QVVKVTSDDDVAESHATYRCV 169
           QVVKV  + ++  SH TYRCV
Sbjct: 309 QVVKVIYNGEITGSHVTYRCV 329