BLASTX nr result
ID: Coptis21_contig00000008
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00000008 (599 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002274485.2| PREDICTED: uncharacterized protein LOC100252... 91 1e-19 emb|CBI25982.3| unnamed protein product [Vitis vinifera] 91 1e-19 ref|XP_002884587.1| hypothetical protein ARALYDRAFT_477953 [Arab... 94 2e-17 ref|NP_187299.1| DEAD-box ATP-dependent RNA helicase 40 [Arabido... 93 4e-17 ref|XP_003547347.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 91 2e-16 >ref|XP_002274485.2| PREDICTED: uncharacterized protein LOC100252874 [Vitis vinifera] Length = 1165 Score = 91.3 bits (225), Expect(2) = 1e-19 Identities = 38/52 (73%), Positives = 48/52 (92%) Frame = +2 Query: 44 MASSEVALASQGPQYAPEDPTLLKPWKGLIDGSSGVLYYWNPESNVTQYERP 199 MA++E A +S GP+YAP+DPTL KPWKGLIDGS+G+LYYWNPE+N+TQYE+P Sbjct: 1 MATAEPAPSSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKP 52 Score = 30.8 bits (68), Expect(2) = 1e-19 Identities = 15/28 (53%), Positives = 20/28 (71%) Frame = +1 Query: 316 KLAPIPMARAVVHNNGTMAAPGQEFNQS 399 KLAPIP AR + NG++A GQ+ NQ+ Sbjct: 71 KLAPIPAARTM-QTNGSLAHHGQQMNQA 97 >emb|CBI25982.3| unnamed protein product [Vitis vinifera] Length = 539 Score = 91.3 bits (225), Expect(2) = 1e-19 Identities = 38/52 (73%), Positives = 48/52 (92%) Frame = +2 Query: 44 MASSEVALASQGPQYAPEDPTLLKPWKGLIDGSSGVLYYWNPESNVTQYERP 199 MA++E A +S GP+YAP+DPTL KPWKGLIDGS+G+LYYWNPE+N+TQYE+P Sbjct: 1 MATAEPAPSSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKP 52 Score = 30.8 bits (68), Expect(2) = 1e-19 Identities = 15/28 (53%), Positives = 20/28 (71%) Frame = +1 Query: 316 KLAPIPMARAVVHNNGTMAAPGQEFNQS 399 KLAPIP AR + NG++A GQ+ NQ+ Sbjct: 71 KLAPIPAARTM-QTNGSLAHHGQQMNQA 97 >ref|XP_002884587.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp. lyrata] gi|297330427|gb|EFH60846.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp. lyrata] Length = 1097 Score = 94.0 bits (232), Expect = 2e-17 Identities = 40/52 (76%), Positives = 47/52 (90%) Frame = +2 Query: 44 MASSEVALASQGPQYAPEDPTLLKPWKGLIDGSSGVLYYWNPESNVTQYERP 199 MA++E AS GP+YAPEDPTL +PWKGLIDGS+G+LYYWNPE+NVTQYERP Sbjct: 1 MATTEATPASAGPRYAPEDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERP 52 >ref|NP_187299.1| DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] gi|75313790|sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gi|6437557|gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gi|332640879|gb|AEE74400.1| DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] Length = 1088 Score = 92.8 bits (229), Expect = 4e-17 Identities = 40/52 (76%), Positives = 47/52 (90%) Frame = +2 Query: 44 MASSEVALASQGPQYAPEDPTLLKPWKGLIDGSSGVLYYWNPESNVTQYERP 199 MA++E AS GP+YAPEDPTL +PWKGLIDGS+G+LYYWNPE+NVTQYERP Sbjct: 1 MATTEDTPASAGPRYAPEDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERP 52 >ref|XP_003547347.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like [Glycine max] Length = 1188 Score = 90.9 bits (224), Expect = 2e-16 Identities = 38/52 (73%), Positives = 47/52 (90%) Frame = +2 Query: 44 MASSEVALASQGPQYAPEDPTLLKPWKGLIDGSSGVLYYWNPESNVTQYERP 199 MA++E A A GP+YAP+DPTL +PWKGLIDGS+G+LYYWNPE+NVTQYE+P Sbjct: 1 MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKP 52