BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00061802
         (309 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|WP_008481306.1| putative RNA-directed DNA polymerase [Nitrol...   153   2e-35
ref|XP_004308263.1| PREDICTED: uncharacterized protein LOC101303...   152   4e-35
ref|XP_004292410.1| PREDICTED: uncharacterized protein LOC101297...   152   6e-35
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   151   8e-35
ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607...   150   2e-34
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             150   2e-34
ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623...   149   3e-34
ref|XP_006464891.1| PREDICTED: uncharacterized protein LOC102626...   149   3e-34
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             149   3e-34
ref|XP_004308201.1| PREDICTED: uncharacterized protein LOC101305...   148   7e-34
ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614...   148   9e-34
gb|ABW81181.1| gag-pol20 [Arabidopsis cebennensis]                    148   9e-34
ref|XP_006495009.1| PREDICTED: uncharacterized protein LOC102608...   147   2e-33
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   146   3e-33
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...   145   4e-33
emb|CAN69925.1| hypothetical protein VITISV_027208 [Vitis vinifera]   142   5e-32
gb|AGX45505.1| reverse transcriptase, partial [Prunus salicina]       141   8e-32
ref|XP_006492207.1| PREDICTED: uncharacterized protein LOC102617...   140   1e-31
emb|CAN64192.1| hypothetical protein VITISV_027121 [Vitis vinifera]   140   1e-31
emb|CAN73809.1| hypothetical protein VITISV_037590 [Vitis vinifera]   140   1e-31

>ref|WP_008481306.1| putative RNA-directed DNA polymerase [Nitrolancea hollandica]
           gi|390170668|emb|CCF85946.1| putative RNA-directed DNA
           polymerase [Nitrolancea hollandica Lb]
          Length = 178

 Score =  153 bits (387), Expect = 2e-35
 Identities = 72/96 (75%), Positives = 82/96 (85%)
 Frame = -1

Query: 306 VMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQILM 127
           V+VKK NGK R C+DF DLNKACPKD +PLP ID++V +TAG+ELLTFMDA SGYNQI+M
Sbjct: 11  VVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFSGYNQIMM 70

Query: 126 HPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
           +P  Q KTSFITD  +YCYKVMPFGLKNAG TYQRL
Sbjct: 71  NPEDQEKTSFITDRGIYCYKVMPFGLKNAGATYQRL 106


>ref|XP_004308263.1| PREDICTED: uncharacterized protein LOC101303281 [Fragaria vesca
           subsp. vesca]
          Length = 488

 Score =  152 bits (385), Expect = 4e-35
 Identities = 72/104 (69%), Positives = 85/104 (81%), Gaps = 2/104 (1%)
 Frame = -1

Query: 309 VVMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQIL 130
           VVMV KPNGKWR CVD+ +LNKACP D +PLPRIDQ+V++T G ++L+F+DA SGYNQI 
Sbjct: 351 VVMVPKPNGKWRMCVDYTNLNKACPMDSFPLPRIDQLVDSTVGFKMLSFLDAYSGYNQIK 410

Query: 129 MHPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL--ARSEE 4
           MHP  Q  T+F+TD  LYCY+VMPFGLKNAG TYQRL  A SEE
Sbjct: 411 MHPTDQEHTTFVTDKGLYCYEVMPFGLKNAGATYQRLVNAMSEE 454


>ref|XP_004292410.1| PREDICTED: uncharacterized protein LOC101297116 [Fragaria vesca
           subsp. vesca]
          Length = 727

 Score =  152 bits (383), Expect = 6e-35
 Identities = 69/100 (69%), Positives = 81/100 (81%)
 Frame = -1

Query: 309 VVMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQIL 130
           VVMV KPNGKWR CVD+ +LNKACP D +PL RIDQ+VN+TAG+++L F+DA SGYNQI 
Sbjct: 142 VVMVPKPNGKWRMCVDYTNLNKACPMDSFPLSRIDQLVNSTAGYKMLNFLDAYSGYNQIK 201

Query: 129 MHPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRLARS 10
           MHP  Q  T+F+TD  LYCY VMPFGLKNAG TYQRL  +
Sbjct: 202 MHPTNQEHTTFVTDKGLYCYGVMPFGLKNAGATYQRLVNA 241


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  151 bits (382), Expect = 8e-35
 Identities = 71/96 (73%), Positives = 79/96 (82%)
 Frame = -1

Query: 306  VMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQILM 127
            V+VKK NGKWR C+DF DLNKACPKD +PLP ID++V ATAG+ELL+FMDA SGYNQILM
Sbjct: 824  VVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILM 883

Query: 126  HPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
            H   + KT FITD   YCYKVMPFGLKNAG TY RL
Sbjct: 884  HQNDREKTVFITDQGTYCYKVMPFGLKNAGATYPRL 919


>ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607673 [Citrus sinensis]
          Length = 1866

 Score =  150 bits (378), Expect = 2e-34
 Identities = 69/97 (71%), Positives = 82/97 (84%)
 Frame = -1

Query: 309  VVMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQIL 130
            VV+VKK NGKWR CVDF DLNKACPKD +PLP+IDQ+V++TAGH LL+FMDA SGYNQI 
Sbjct: 900  VVLVKKANGKWRMCVDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLLSFMDAFSGYNQIP 959

Query: 129  MHPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
            M+   +  T+FIT+  L+CY+VMPFGLKNAG TYQRL
Sbjct: 960  MNEQDEESTTFITNMGLFCYRVMPFGLKNAGATYQRL 996


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  150 bits (378), Expect = 2e-34
 Identities = 71/96 (73%), Positives = 81/96 (84%)
 Frame = -1

Query: 306 VMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQILM 127
           V+VKK NGK R C+DF DLNKACPKD +PLP ID++V +TAG+ELLTFMDA SG NQI+M
Sbjct: 63  VVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFSGSNQIMM 122

Query: 126 HPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
           +P  Q KTSFITD  +YCYKVMPFGLKNAG TYQRL
Sbjct: 123 NPEDQEKTSFITDRGIYCYKVMPFGLKNAGATYQRL 158


>ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623105 [Citrus sinensis]
          Length = 1407

 Score =  149 bits (377), Expect = 3e-34
 Identities = 69/97 (71%), Positives = 82/97 (84%)
 Frame = -1

Query: 309  VVMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQIL 130
            VV+VKK NGKWR CVDF DLNKACPKD +PLP+IDQ+V++TAGH LL+FMDA SGYNQI 
Sbjct: 913  VVLVKKANGKWRMCVDFTDLNKACPKDSFPLPKIDQLVDSTAGHGLLSFMDAFSGYNQIP 972

Query: 129  MHPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
            M+   +  T+FIT+  L+CY+VMPFGLKNAG TYQRL
Sbjct: 973  MYEPDEESTAFITNQGLFCYRVMPFGLKNAGATYQRL 1009


>ref|XP_006464891.1| PREDICTED: uncharacterized protein LOC102626228 [Citrus sinensis]
          Length = 1189

 Score =  149 bits (377), Expect = 3e-34
 Identities = 69/97 (71%), Positives = 82/97 (84%)
 Frame = -1

Query: 309  VVMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQIL 130
            VV+VKK NGKWR CVDF DLNKACPKD +PLP+IDQ+V++TAGH LL+FMDA SGYNQI 
Sbjct: 835  VVLVKKANGKWRMCVDFTDLNKACPKDSFPLPKIDQLVDSTAGHGLLSFMDAFSGYNQIP 894

Query: 129  MHPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
            M+   +  T+FIT+  L+CY+VMPFGLKNAG TYQRL
Sbjct: 895  MYEPDEESTAFITNQGLFCYRVMPFGLKNAGATYQRL 931


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  149 bits (377), Expect = 3e-34
 Identities = 70/95 (73%), Positives = 78/95 (82%)
 Frame = -1

Query: 306  VMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQILM 127
            V+VKK NGKWR CVD+ DLNKACPKD YPLP ID++V AT+G+ LL+FMDA SGYNQILM
Sbjct: 866  VVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILM 925

Query: 126  HPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQR 22
            H   Q KTSF+TD   YCYKVM FGLKNAG TYQR
Sbjct: 926  HKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQR 960


>ref|XP_004308201.1| PREDICTED: uncharacterized protein LOC101305990 [Fragaria vesca
           subsp. vesca]
          Length = 989

 Score =  148 bits (374), Expect = 7e-34
 Identities = 67/100 (67%), Positives = 82/100 (82%)
 Frame = -1

Query: 309 VVMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQIL 130
           VVMV KPNGKWR CVD+ +LNKACP D +PLP+IDQ+V++TAG ++L+F+DA SGYNQI 
Sbjct: 62  VVMVPKPNGKWRMCVDYTNLNKACPMDSFPLPQIDQLVDSTAGFKMLSFLDAYSGYNQIK 121

Query: 129 MHPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRLARS 10
           M P  Q  T+F+TD  LYCY+VMPFGLKNAG TYQRL  +
Sbjct: 122 MQPTDQDHTTFVTDKGLYCYEVMPFGLKNAGATYQRLVNA 161


>ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614166 [Citrus sinensis]
          Length = 1089

 Score =  148 bits (373), Expect = 9e-34
 Identities = 68/97 (70%), Positives = 82/97 (84%)
 Frame = -1

Query: 309  VVMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQIL 130
            VV+VKK NGKWR CVDF DLNKACPKD +PLP+IDQ+V++TAGH LL+FMDA SGYNQI 
Sbjct: 733  VVLVKKANGKWRMCVDFTDLNKACPKDSFPLPKIDQLVDSTAGHGLLSFMDAFSGYNQIP 792

Query: 129  MHPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
            M+   +  T+FIT+  L+CY++MPFGLKNAG TYQRL
Sbjct: 793  MNEQDEENTTFITNMGLFCYRMMPFGLKNAGATYQRL 829


>gb|ABW81181.1| gag-pol20 [Arabidopsis cebennensis]
          Length = 498

 Score =  148 bits (373), Expect = 9e-34
 Identities = 70/96 (72%), Positives = 80/96 (83%)
 Frame = -1

Query: 306 VMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQILM 127
           V+VKK NGKWR CVDF DLNKACPKD +PLP ID++V ATAG++LL+FM A +GYNQILM
Sbjct: 248 VVVKKKNGKWRVCVDFTDLNKACPKDSFPLPHIDRLVEATAGNKLLSFMVAFAGYNQILM 307

Query: 126 HPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
           HP    KT+FITD  +YCYKVM FGLKNAG TYQRL
Sbjct: 308 HPDDCEKTTFITDRGIYCYKVMLFGLKNAGATYQRL 343


>ref|XP_006495009.1| PREDICTED: uncharacterized protein LOC102608416 [Citrus sinensis]
          Length = 1313

 Score =  147 bits (370), Expect = 2e-33
 Identities = 68/97 (70%), Positives = 81/97 (83%)
 Frame = -1

Query: 309  VVMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQIL 130
            VV+VKK NGKWR CVDF DLNKACPKD +PL +IDQ+V++TAGH LL+FMDA SGYNQI 
Sbjct: 745  VVLVKKANGKWRMCVDFTDLNKACPKDSFPLQKIDQLVDSTAGHSLLSFMDAFSGYNQIP 804

Query: 129  MHPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
            M+   +  T+FIT+  L+CY+VMPFGLKNAG TYQRL
Sbjct: 805  MNEQDEESTTFITNMGLFCYRVMPFGLKNAGATYQRL 841


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  146 bits (368), Expect = 3e-33
 Identities = 68/96 (70%), Positives = 80/96 (83%)
 Frame = -1

Query: 306 VMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQILM 127
           V+VKK NGK R C+DF DLNKACPKD +PLP ID++V +TAG+ELL+FMDA SGYNQI+M
Sbjct: 506 VVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMM 565

Query: 126 HPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
           +P  Q KT FITD  +YCYKVMPFGL+NAG TY RL
Sbjct: 566 NPEDQEKTLFITDRGIYCYKVMPFGLRNAGATYPRL 601


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score =  145 bits (367), Expect = 4e-33
 Identities = 69/96 (71%), Positives = 75/96 (78%)
 Frame = -1

Query: 306 VMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQILM 127
           V+VKK N KWR C+DF DLNKACPKD +PLP ID+MV AT G+ELL+FMDA SGYNQI M
Sbjct: 539 VVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQIPM 598

Query: 126 HPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
           H   Q KTSFI D   YCYKVMPFGLKN G  YQRL
Sbjct: 599 HKDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRL 634


>emb|CAN69925.1| hypothetical protein VITISV_027208 [Vitis vinifera]
          Length = 982

 Score =  142 bits (358), Expect = 5e-32
 Identities = 66/97 (68%), Positives = 79/97 (81%)
 Frame = -1

Query: 309 VVMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQIL 130
           VV+V K  GKWR CVD+ +LN ACPKD +PLPRIDQ+V++TAG  +L+F+DA SGY+QI 
Sbjct: 62  VVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTAGQRMLSFLDAFSGYHQIP 121

Query: 129 MHPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
           M PA + KT+FIT   LYCYKVMPFGLKNAG TYQRL
Sbjct: 122 MSPADEEKTAFITPHGLYCYKVMPFGLKNAGATYQRL 158


>gb|AGX45505.1| reverse transcriptase, partial [Prunus salicina]
          Length = 101

 Score =  141 bits (356), Expect = 8e-32
 Identities = 66/89 (74%), Positives = 73/89 (82%)
 Frame = -1

Query: 276 RTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQILMHPAYQTKTSF 97
           R CVD+ +LN+ACPKD +PLPRIDQ+V+ATAGH LL+FMDA SGYNQI MHP  Q  TSF
Sbjct: 1   RMCVDYTNLNRACPKDSFPLPRIDQLVDATAGHALLSFMDAYSGYNQIFMHPEDQAHTSF 60

Query: 96  ITD*ALYCYKVMPFGLKNAGVTYQRLARS 10
           ITD  LYCYKVMPFGLKNAG TYQ L  S
Sbjct: 61  ITDRGLYCYKVMPFGLKNAGATYQHLVNS 89


>ref|XP_006492207.1| PREDICTED: uncharacterized protein LOC102617447 [Citrus sinensis]
          Length = 1100

 Score =  140 bits (354), Expect = 1e-31
 Identities = 65/96 (67%), Positives = 78/96 (81%)
 Frame = -1

Query: 309 VVMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQIL 130
           VV+VKK NGKWR CVDF DLNKAC KD +PLP IDQ+V++TAGH LL+F+DA SGYNQI 
Sbjct: 599 VVLVKKANGKWRMCVDFTDLNKACQKDSFPLPMIDQLVDSTAGHSLLSFIDAFSGYNQIP 658

Query: 129 MHPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQR 22
           M    +  T++IT+  L+CY+VMPFGLKNAG TYQR
Sbjct: 659 MDEQDEENTTYITNMGLFCYRVMPFGLKNAGATYQR 694


>emb|CAN64192.1| hypothetical protein VITISV_027121 [Vitis vinifera]
          Length = 1023

 Score =  140 bits (354), Expect = 1e-31
 Identities = 64/97 (65%), Positives = 79/97 (81%)
 Frame = -1

Query: 309 VVMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQIL 130
           VV++ K  GKWR CVD+ +LN ACPKD +PLPRIDQ++++TAG  +L+F+DA SGY+QIL
Sbjct: 62  VVVIPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIIDSTAGQGMLSFLDAFSGYHQIL 121

Query: 129 MHPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
           M PA + KT+FIT   LYCYKVMPFGLKNA  TYQRL
Sbjct: 122 MAPADEEKTAFITPYGLYCYKVMPFGLKNASATYQRL 158


>emb|CAN73809.1| hypothetical protein VITISV_037590 [Vitis vinifera]
          Length = 1092

 Score =  140 bits (354), Expect = 1e-31
 Identities = 65/97 (67%), Positives = 79/97 (81%)
 Frame = -1

Query: 309 VVMVKKPNGKWRTCVDFLDLNKACPKDCYPLPRIDQMVNATAGHELLTFMDA*SGYNQIL 130
           VV+V K  GKWR CVD+ +LN ACPKD +PLPRIDQ+V++T+G  +L+F+DA SGY+QIL
Sbjct: 62  VVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQIL 121

Query: 129 MHPAYQTKTSFITD*ALYCYKVMPFGLKNAGVTYQRL 19
           M P  + KT+FIT   LYCYKVMPFGLKNAG TYQRL
Sbjct: 122 MSPDDEEKTAFITPHGLYCYKVMPFGLKNAGATYQRL 158