BLASTX nr result
ID: Cocculus23_contig00057432
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00057432
(289 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g... 139 4e-31
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 139 5e-31
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 137 1e-30
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 137 2e-30
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 137 2e-30
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 137 2e-30
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 136 3e-30
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 135 4e-30
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 135 4e-30
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 134 1e-29
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 134 1e-29
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 134 1e-29
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 129 3e-28
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 129 3e-28
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 128 7e-28
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 128 9e-28
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 128 9e-28
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 124 1e-27
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 126 3e-27
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 126 4e-27
>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
Japonica Group]
Length = 778
Score = 139 bits (350), Expect = 4e-31
Identities = 63/88 (71%), Positives = 73/88 (82%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C +EGIVRH TI HTPQQNG+AERMNRT++ K RCMLSNAGLPK+FWAEAV+
Sbjct: 533 CSKIFKSYCKSEGIVRHYTIPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVS 592
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSPL 265
TACYL+NRSPS AI+ KTP EVWS SP+
Sbjct: 593 TACYLINRSPSYAIDKKTPIEVWSGSPV 620
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 139 bits (349), Expect = 5e-31
Identities = 62/87 (71%), Positives = 73/87 (83%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C +EGIVRH T+ HTPQQNG+AERMNRT++ K RCMLSNAGLPK+FWAEAV+
Sbjct: 388 CSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVS 447
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TACYL+NRSPS AI+ KTP EVWS+SP
Sbjct: 448 TACYLINRSPSYAIDKKTPIEVWSSSP 474
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 137 bits (346), Expect = 1e-30
Identities = 59/84 (70%), Positives = 72/84 (85%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C E ++FC +EGI RHRT+R+TPQQNG+AERMN+TLLE+ RCMLSNAGL + FWAEAV+
Sbjct: 545 CWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVS 604
Query: 182 TACYLVNRSPSTAIECKTP*EVWS 253
TACYL+NR P T I+CKTP E+WS
Sbjct: 605 TACYLINRGPHTGIQCKTPMEMWS 628
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 137 bits (345), Expect = 2e-30
Identities = 61/87 (70%), Positives = 72/87 (82%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C +EGIVRH T+ HTPQQNG+AERMNRT++ K RC+LSNAGLPK+FWAEAV+
Sbjct: 774 CSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVS 833
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TACYL+NRSPS AI+ KTP EVWS SP
Sbjct: 834 TACYLINRSPSYAIDKKTPIEVWSGSP 860
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 137 bits (345), Expect = 2e-30
Identities = 61/87 (70%), Positives = 72/87 (82%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C +EGIVRH T+ HTPQQNG+AERMNRT++ K RC+LSNAGLPK+FWAEAV+
Sbjct: 567 CSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVS 626
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TACYL+NRSPS AI+ KTP EVWS SP
Sbjct: 627 TACYLINRSPSYAIDKKTPIEVWSGSP 653
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 137 bits (344), Expect = 2e-30
Identities = 61/87 (70%), Positives = 72/87 (82%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C +EGIVRH T+ HTPQQNG+AERMNRT++ K RCMLSNAGLPK+FWAEAV+
Sbjct: 528 CSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVS 587
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TACYL+NRSPS AI+ KTP +VWS SP
Sbjct: 588 TACYLINRSPSYAIDKKTPIKVWSGSP 614
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 136 bits (342), Expect = 3e-30
Identities = 61/87 (70%), Positives = 71/87 (81%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C +EGIVRH T+ HTPQQNG+AERMNRT++ K RCMLSNA LPK+FWAEAV+
Sbjct: 476 CSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVS 535
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TACYL+NRSPS AI+ KTP EVWS SP
Sbjct: 536 TACYLINRSPSYAIDKKTPIEVWSGSP 562
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 135 bits (341), Expect = 4e-30
Identities = 61/87 (70%), Positives = 72/87 (82%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C + + FC EGIVRHRT+RHTPQQNG+AERMN+TL+++ RCM +AGL K+FWAEAVN
Sbjct: 666 CNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVN 725
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TA YLVNRSPSTAI+ KTP EVWS P
Sbjct: 726 TAAYLVNRSPSTAIDFKTPQEVWSGKP 752
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 135 bits (341), Expect = 4e-30
Identities = 61/87 (70%), Positives = 72/87 (82%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C + + FC EGIVRHRT+RHTPQQNG+AERMN+TL+++ RCM +AGL K+FWAEAVN
Sbjct: 879 CNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVN 938
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TA YLVNRSPSTAI+ KTP EVWS P
Sbjct: 939 TAAYLVNRSPSTAIDFKTPQEVWSGKP 965
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 134 bits (337), Expect = 1e-29
Identities = 58/87 (66%), Positives = 70/87 (80%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C + +C +EGIVRH T+ HTPQQNG+ ERMNRT++ K RCMLSNAGLP+ FWAEA +
Sbjct: 506 CSRQFKSYCRSEGIVRHYTVSHTPQQNGVVERMNRTIISKARCMLSNAGLPRRFWAEAAS 565
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TACYL+NRSPS AI+ KTP E+WS SP
Sbjct: 566 TACYLINRSPSYAIDKKTPIEMWSGSP 592
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 134 bits (337), Expect = 1e-29
Identities = 59/87 (67%), Positives = 71/87 (81%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C +EGI+RH T+ HTPQQNG+AERMNRT++ K RCMLSNAGLPK+FWAEAV+
Sbjct: 384 CSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVS 443
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TACYL+NRSP AI+ KTP +VWS SP
Sbjct: 444 TACYLINRSPGYAIDKKTPIKVWSGSP 470
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 134 bits (337), Expect = 1e-29
Identities = 59/87 (67%), Positives = 71/87 (81%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C +EGI+RH T+ HTPQQNG+AERMNRT++ K RCMLSNAGLPK+FWAEAV+
Sbjct: 552 CSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVS 611
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TACYL+NRSP AI+ KTP +VWS SP
Sbjct: 612 TACYLINRSPGYAIDKKTPIKVWSGSP 638
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 129 bits (325), Expect = 3e-28
Identities = 60/87 (68%), Positives = 70/87 (80%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C +EGIVRH T+ HTPQQNG+AERMNR ++ K RCMLSNAGLPK+FWAEAV+
Sbjct: 567 CSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVS 626
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TACYL+NRSPS A + KTP EVWS SP
Sbjct: 627 TACYLINRSPSYANK-KTPIEVWSGSP 652
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 129 bits (325), Expect = 3e-28
Identities = 59/87 (67%), Positives = 68/87 (78%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C +EGIV H T HTPQQN +AERMNRT++ K RCMLSNAGLPK+FWAEAV+
Sbjct: 539 CSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEAVS 598
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TACYL+NRSP AI+ KTP EVWS SP
Sbjct: 599 TACYLINRSPGYAIDKKTPIEVWSGSP 625
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549746|gb|ABA92543.1|
retrotransposon protein, putative, Ty1-copia subclass,
expressed [Oryza sativa Japonica Group]
Length = 1170
Score = 128 bits (322), Expect = 7e-28
Identities = 58/87 (66%), Positives = 68/87 (78%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C EGIVRH T+ HTPQQNG+AERM RT++ K+RCML GLPK+FWAEAV+
Sbjct: 602 CSKIFKSYCKCEGIVRHYTVPHTPQQNGVAERMKRTIISKSRCMLPYVGLPKQFWAEAVS 661
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TACYL+NRSPS AI+ KTP EVWS SP
Sbjct: 662 TACYLINRSPSYAIDKKTPIEVWSGSP 688
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 128 bits (321), Expect = 9e-28
Identities = 58/86 (67%), Positives = 67/86 (77%)
Frame = +2
Query: 8 GELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVNTA 187
GE FC EGIVR T+ HTPQQNG+AERMNRTLLE+TR ML AG+ K FWAEAV TA
Sbjct: 558 GEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTA 617
Query: 188 CYLVNRSPSTAIECKTP*EVWSNSPL 265
CY++NRSPSTAI+ KTP E+W P+
Sbjct: 618 CYVINRSPSTAIDLKTPMEMWKGKPV 643
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 128 bits (321), Expect = 9e-28
Identities = 58/86 (67%), Positives = 67/86 (77%)
Frame = +2
Query: 8 GELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVNTA 187
GE FC EGIVR T+ HTPQQNG+AERMNRTLLE+TR ML AG+ K FWAEAV TA
Sbjct: 558 GEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTA 617
Query: 188 CYLVNRSPSTAIECKTP*EVWSNSPL 265
CY++NRSPSTAI+ KTP E+W P+
Sbjct: 618 CYVINRSPSTAIDLKTPMEMWKGKPV 643
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 124 bits (311), Expect(2) = 1e-27
Identities = 56/87 (64%), Positives = 67/87 (77%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C GI RH+T+R TPQQNG+AERMNRTL++KTRCML N+ LP+ FWAEAVN
Sbjct: 557 CSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKTRCMLINSKLPRSFWAEAVN 616
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
TA YLVNRSPS+AI KTP E+W+ P
Sbjct: 617 TASYLVNRSPSSAIGFKTPEELWNGKP 643
Score = 24.3 bits (51), Expect(2) = 1e-27
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 259 PSNYQNLRVF 288
P+NYQNLRVF
Sbjct: 643 PANYQNLRVF 652
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 126 bits (317), Expect = 3e-27
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +2
Query: 8 GELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVNTA 187
GE FC EGIVR T+ HTPQQNG+AERMNRTLLE+TR ML AG+ K FWAEA TA
Sbjct: 558 GEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAAKTA 617
Query: 188 CYLVNRSPSTAIECKTP*EVWSNSPL 265
CY++NRSPSTAI+ KTP E+W P+
Sbjct: 618 CYVINRSPSTAIDLKTPMEMWKGKPV 643
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 126 bits (316), Expect = 4e-27
Identities = 56/87 (64%), Positives = 66/87 (75%)
Frame = +2
Query: 2 CGGELNRFCSNEGIVRHRTIRHTPQQNGIAERMNRTLLEKTRCMLSNAGLPKEFWAEAVN 181
C +C +EGIV H T+ HTPQQNG+AERMN ++ K RCMLSNA LPK+FWAEAV+
Sbjct: 602 CSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVS 661
Query: 182 TACYLVNRSPSTAIECKTP*EVWSNSP 262
T CYL+NRSPS A + KTP EVWS SP
Sbjct: 662 TTCYLINRSPSYATDKKTPIEVWSGSP 688