BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00057266
         (569 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE58379.1| hypothetical protein OsJ_09535 [Oryza sativa Japo...   254   4e-87
gb|EEC74578.1| hypothetical protein OsI_10148 [Oryza sativa Indi...   254   4e-87
ref|NP_001173278.1| Os03g0165000 [Oryza sativa Japonica Group] g...   254   4e-87
gb|AAM15783.1|AC104428_4 Putative DNA topoisomerase III [Oryza s...   254   4e-87
ref|XP_006649448.1| PREDICTED: DNA topoisomerase 3-alpha-like [O...   254   5e-87
ref|XP_004985595.1| PREDICTED: DNA topoisomerase 3-alpha-like [S...   253   1e-86
ref|XP_002465810.1| hypothetical protein SORBIDRAFT_01g046210 [S...   253   1e-86
tpg|DAA43538.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea m...   252   4e-86
gb|EEC84165.1| hypothetical protein OsI_30540 [Oryza sativa Indi...   249   8e-86
ref|XP_004502963.1| PREDICTED: DNA topoisomerase 3-alpha-like [C...   250   9e-85
ref|XP_003558748.1| PREDICTED: DNA topoisomerase 3-alpha [Brachy...   251   3e-84
ref|XP_002307047.1| hypothetical protein POPTR_0005s06810g [Popu...   252   3e-84
gb|EMT33584.1| DNA topoisomerase 3-alpha [Aegilops tauschii]          247   4e-83
ref|NP_201197.1| topoisomerase 3alpha [Arabidopsis thaliana] gi|...   249   2e-82
ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arab...   249   2e-82
ref|XP_006279975.1| hypothetical protein CARUB_v10025845mg [Caps...   247   5e-82
tpg|DAA43539.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea m...   252   3e-81
emb|CBI37515.3| unnamed protein product [Vitis vinifera]              272   4e-71
ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis ...   272   4e-71
gb|EYU20555.1| hypothetical protein MIMGU_mgv1a019308mg [Mimulus...   226   2e-69

>gb|EEE58379.1| hypothetical protein OsJ_09535 [Oryza sativa Japonica Group]
          Length = 983

 Score =  254 bits (649), Expect(2) = 4e-87
 Identities = 116/140 (82%), Positives = 131/140 (93%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IHEA Q L RPN+LFADAVD RQEIDLRIGASFTRFQTMLL+DAFV+D 
Sbjct: 251 RARFSALIDREIHEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDD 310

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TGDDRN++LSYGPCQFPTLGF+VER+WEIQAHEPEEFW INCSHTS+EGTA+F W+RGH+
Sbjct: 311 TGDDRNIILSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHL 370

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY+ AV+IYEMCV+EP AT
Sbjct: 371 FDYSSAVVIYEMCVEEPMAT 390



 Score = 93.6 bits (231), Expect(2) = 4e-87
 Identities = 45/58 (77%), Positives = 51/58 (87%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV   P+  V  VR+Q+KLKYPPYPL+TIEL+KRASRYFRMSSEHTMKVAE+LYQAGF
Sbjct: 383 CV-EEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGF 439


>gb|EEC74578.1| hypothetical protein OsI_10148 [Oryza sativa Indica Group]
          Length = 981

 Score =  254 bits (649), Expect(2) = 4e-87
 Identities = 116/140 (82%), Positives = 131/140 (93%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IHEA Q L RPN+LFADAVD RQEIDLRIGASFTRFQTMLL+DAFV+D 
Sbjct: 251 RARFSALIDREIHEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDD 310

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TGDDRN++LSYGPCQFPTLGF+VER+WEIQAHEPEEFW INCSHTS+EGTA+F W+RGH+
Sbjct: 311 TGDDRNIILSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHL 370

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY+ AV+IYEMCV+EP AT
Sbjct: 371 FDYSSAVVIYEMCVEEPMAT 390



 Score = 93.6 bits (231), Expect(2) = 4e-87
 Identities = 45/58 (77%), Positives = 51/58 (87%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV   P+  V  VR+Q+KLKYPPYPL+TIEL+KRASRYFRMSSEHTMKVAE+LYQAGF
Sbjct: 383 CV-EEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGF 439


>ref|NP_001173278.1| Os03g0165000 [Oryza sativa Japonica Group]
           gi|255674230|dbj|BAH92006.1| Os03g0165000 [Oryza sativa
           Japonica Group]
          Length = 928

 Score =  254 bits (649), Expect(2) = 4e-87
 Identities = 116/140 (82%), Positives = 131/140 (93%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IHEA Q L RPN+LFADAVD RQEIDLRIGASFTRFQTMLL+DAFV+D 
Sbjct: 153 RARFSALIDREIHEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDD 212

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TGDDRN++LSYGPCQFPTLGF+VER+WEIQAHEPEEFW INCSHTS+EGTA+F W+RGH+
Sbjct: 213 TGDDRNIILSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHL 272

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY+ AV+IYEMCV+EP AT
Sbjct: 273 FDYSSAVVIYEMCVEEPMAT 292



 Score = 93.6 bits (231), Expect(2) = 4e-87
 Identities = 45/58 (77%), Positives = 51/58 (87%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV   P+  V  VR+Q+KLKYPPYPL+TIEL+KRASRYFRMSSEHTMKVAE+LYQAGF
Sbjct: 285 CV-EEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGF 341


>gb|AAM15783.1|AC104428_4 Putative DNA topoisomerase III [Oryza sativa Japonica Group]
           gi|108706350|gb|ABF94145.1| DNA topoisomerase family
           protein, expressed [Oryza sativa Japonica Group]
          Length = 912

 Score =  254 bits (649), Expect(2) = 4e-87
 Identities = 116/140 (82%), Positives = 131/140 (93%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IHEA Q L RPN+LFADAVD RQEIDLRIGASFTRFQTMLL+DAFV+D 
Sbjct: 251 RARFSALIDREIHEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDD 310

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TGDDRN++LSYGPCQFPTLGF+VER+WEIQAHEPEEFW INCSHTS+EGTA+F W+RGH+
Sbjct: 311 TGDDRNIILSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHL 370

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY+ AV+IYEMCV+EP AT
Sbjct: 371 FDYSSAVVIYEMCVEEPMAT 390



 Score = 93.6 bits (231), Expect(2) = 4e-87
 Identities = 45/58 (77%), Positives = 51/58 (87%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV   P+  V  VR+Q+KLKYPPYPL+TIEL+KRASRYFRMSSEHTMKVAE+LYQAGF
Sbjct: 383 CV-EEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGF 439


>ref|XP_006649448.1| PREDICTED: DNA topoisomerase 3-alpha-like [Oryza brachyantha]
          Length = 923

 Score =  254 bits (648), Expect(2) = 5e-87
 Identities = 116/140 (82%), Positives = 131/140 (93%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IHEA Q L RPN+LFADAVD RQEIDLRIGASFTRFQTMLLRDAFV+D 
Sbjct: 153 RARFSALIDREIHEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTMLLRDAFVLDD 212

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TGD+RN++LSYGPCQFPTLGF+VER+WEIQAHEPEEFW INCSHTS+EGTA+F W+RGH+
Sbjct: 213 TGDERNMILSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHL 272

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY+ AV+IYEMCV+EP AT
Sbjct: 273 FDYSSAVVIYEMCVEEPMAT 292



 Score = 93.6 bits (231), Expect(2) = 5e-87
 Identities = 45/58 (77%), Positives = 51/58 (87%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV   P+  V  VR+Q+KLKYPPYPL+TIEL+KRASRYFRMSSEHTMKVAE+LYQAGF
Sbjct: 285 CV-EEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGF 341


>ref|XP_004985595.1| PREDICTED: DNA topoisomerase 3-alpha-like [Setaria italica]
          Length = 917

 Score =  253 bits (647), Expect(2) = 1e-86
 Identities = 116/140 (82%), Positives = 130/140 (92%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IHE+ Q L RPN+LFADAVD RQEIDLRIGASFTRFQTMLL+DAFV+D 
Sbjct: 151 RARFSALIDREIHESVQHLGRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVIDV 210

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TGDDRNLVLSYGPCQFPTLGF+VER+WEIQAHEPEEFW INC+HTS+EGTA+F W+RGH+
Sbjct: 211 TGDDRNLVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCTHTSDEGTASFGWIRGHL 270

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY  AVI+YEMCV+EP AT
Sbjct: 271 FDYPSAVILYEMCVEEPMAT 290



 Score = 92.8 bits (229), Expect(2) = 1e-86
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV   P+  V  VR+Q+KLKYPPYPL+T+EL+KRASRYFRMSSEHTMKVAE+LYQAGF
Sbjct: 283 CV-EEPMATVQNVRNQEKLKYPPYPLSTLELQKRASRYFRMSSEHTMKVAEELYQAGF 339


>ref|XP_002465810.1| hypothetical protein SORBIDRAFT_01g046210 [Sorghum bicolor]
           gi|241919664|gb|EER92808.1| hypothetical protein
           SORBIDRAFT_01g046210 [Sorghum bicolor]
          Length = 860

 Score =  253 bits (647), Expect(2) = 1e-86
 Identities = 115/140 (82%), Positives = 130/140 (92%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IHE+ Q L RPN+LFADAVD RQEIDLRIGASFTRFQTMLL+DAFV++ 
Sbjct: 150 RARFSALIDREIHESVQHLGRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVINV 209

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TGDDRNLVLSYGPCQFPTLGF+VER+WEIQAHEPEEFW INC+HTS+EGTA+F W+RGH+
Sbjct: 210 TGDDRNLVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCTHTSDEGTASFGWIRGHL 269

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY+CA+ IYEMCV EP AT
Sbjct: 270 FDYSCAISIYEMCVSEPMAT 289



 Score = 92.8 bits (229), Expect(2) = 1e-86
 Identities = 42/53 (79%), Positives = 49/53 (92%)
 Frame = +2

Query: 410 PLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           P+  V  VR+Q+KLKYPPYPL+T+EL+KRASRYFRMSSEHTMKVAE+LYQAGF
Sbjct: 286 PMATVQNVRNQEKLKYPPYPLSTVELQKRASRYFRMSSEHTMKVAEELYQAGF 338


>tpg|DAA43538.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea mays]
          Length = 915

 Score =  252 bits (643), Expect(2) = 4e-86
 Identities = 114/140 (81%), Positives = 130/140 (92%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IHE+ Q L RPN+LFADAVD RQEIDLRIGASFTRFQTMLL+DAFV+D 
Sbjct: 150 RARFSALIDREIHESVQHLGRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVIDV 209

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TGD+R+LVLSYGPCQFPTLGF+VER+WEIQAHEPEEFW INC+HTS+EGTA+F W+RGH+
Sbjct: 210 TGDERSLVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCTHTSDEGTASFGWIRGHL 269

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY+CA+ IYEMCV EP AT
Sbjct: 270 FDYSCAISIYEMCVSEPMAT 289



 Score = 92.8 bits (229), Expect(2) = 4e-86
 Identities = 42/53 (79%), Positives = 49/53 (92%)
 Frame = +2

Query: 410 PLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           P+  V  VR+Q+KLKYPPYPL+T+EL+KRASRYFRMSSEHTMKVAE+LYQAGF
Sbjct: 286 PMATVQNVRNQEKLKYPPYPLSTVELQKRASRYFRMSSEHTMKVAEELYQAGF 338


>gb|EEC84165.1| hypothetical protein OsI_30540 [Oryza sativa Indica Group]
          Length = 897

 Score =  249 bits (636), Expect(2) = 8e-86
 Identities = 114/140 (81%), Positives = 130/140 (92%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RA FSALIDR+IHEA Q L RPN+LFADAVD RQEIDLRIGASFTRFQT+LL+DAFV+D 
Sbjct: 153 RACFSALIDREIHEAVQHLDRPNKLFADAVDARQEIDLRIGASFTRFQTVLLKDAFVLDD 212

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TGDDRN++LSYGPCQFPTLGF+VER+WEIQAHEPEEFW INCSHTS+EGTA+F W+RGH+
Sbjct: 213 TGDDRNIILSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHL 272

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY+ AV+IYEMCV+EP AT
Sbjct: 273 FDYSSAVVIYEMCVKEPMAT 292



 Score = 94.4 bits (233), Expect(2) = 8e-86
 Identities = 45/58 (77%), Positives = 52/58 (89%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV + P+  V  VR+Q+KLKYPPYPL+TIEL+KRASRYFRMSSEHTMKVAE+LYQAGF
Sbjct: 285 CV-KEPMATVQNVRNQEKLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGF 341


>ref|XP_004502963.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cicer arietinum]
          Length = 920

 Score =  250 bits (638), Expect(2) = 9e-85
 Identities = 113/140 (80%), Positives = 127/140 (90%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IH+A Q LV PN+ FADAVD RQEIDLRIGASFTRFQTML++DAF++D 
Sbjct: 148 RARFSALIDREIHQAVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMKDAFIIDT 207

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
             DDRN++LSYGPCQFPTLGFVVERYWEIQAHEPEEFW+INCSH S+EG A F+W RGH+
Sbjct: 208 ITDDRNIILSYGPCQFPTLGFVVERYWEIQAHEPEEFWSINCSHRSDEGVANFSWGRGHL 267

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDYTCAVIIYEMC +EPTAT
Sbjct: 268 FDYTCAVIIYEMCTEEPTAT 287



 Score = 90.1 bits (222), Expect(2) = 9e-85
 Identities = 42/53 (79%), Positives = 47/53 (88%)
 Frame = +2

Query: 410 PLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           P   V  VR Q+KLKYPP+PL+TIELEKRASRYFRMSSEHTMKVAE+LYQ+GF
Sbjct: 284 PTATVTNVRQQEKLKYPPHPLSTIELEKRASRYFRMSSEHTMKVAEELYQSGF 336


>ref|XP_003558748.1| PREDICTED: DNA topoisomerase 3-alpha [Brachypodium distachyon]
          Length = 924

 Score =  251 bits (642), Expect(2) = 3e-84
 Identities = 114/140 (81%), Positives = 131/140 (93%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IHEA Q L RPN+LFADAVD RQEIDLRIGASFTRFQTMLL+DAFV+D 
Sbjct: 152 RARFSALIDREIHEAVQHLGRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDV 211

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           +G++RN+VLSYGPCQFPTLGF+VER+WEIQAHEPEEFW INCSHTS+EGTA+F W+RGH+
Sbjct: 212 SGEERNMVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFGWIRGHL 271

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY+ A++IYEMCVQEP AT
Sbjct: 272 FDYSSAIVIYEMCVQEPMAT 291



 Score = 86.7 bits (213), Expect(2) = 3e-84
 Identities = 42/58 (72%), Positives = 50/58 (86%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV + P+  V  VR+Q+KLKYPPYPL+T+EL+KRASR  RMSSEHTMKVAE+LYQAGF
Sbjct: 284 CV-QEPMATVQNVRNQEKLKYPPYPLSTLELQKRASRCCRMSSEHTMKVAEELYQAGF 340


>ref|XP_002307047.1| hypothetical protein POPTR_0005s06810g [Populus trichocarpa]
           gi|222856496|gb|EEE94043.1| hypothetical protein
           POPTR_0005s06810g [Populus trichocarpa]
          Length = 910

 Score =  252 bits (644), Expect(2) = 3e-84
 Identities = 116/140 (82%), Positives = 128/140 (91%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALI+RDIHEAAQ L+ PNQ F+DAVD RQEIDLRIGASFTRFQTMLLRD FV+D 
Sbjct: 143 RARFSALIERDIHEAAQNLIAPNQWFSDAVDARQEIDLRIGASFTRFQTMLLRDRFVIDS 202

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
             DDRNLVLSYGPCQFPTLGFVVERYWEIQ+HEPEEFW INC+H S+EG A+FNWMRGH+
Sbjct: 203 AQDDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFWTINCTHRSDEGLASFNWMRGHL 262

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDYT +VI+YEMCV+EPTAT
Sbjct: 263 FDYTSSVILYEMCVEEPTAT 282



 Score = 85.9 bits (211), Expect(2) = 3e-84
 Identities = 42/58 (72%), Positives = 46/58 (79%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV      +  +   Q+KLKYPPYPL+TIELEKRASRYFRMSSE TMKVAEDLYQAGF
Sbjct: 275 CVEEPTATVSNRNHQQEKLKYPPYPLSTIELEKRASRYFRMSSEQTMKVAEDLYQAGF 332


>gb|EMT33584.1| DNA topoisomerase 3-alpha [Aegilops tauschii]
          Length = 745

 Score =  247 bits (631), Expect(2) = 4e-83
 Identities = 113/140 (80%), Positives = 129/140 (92%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALI R+IHEA Q L RPN+LFADAVD RQEIDLRIGASFTRFQTMLL+DAFV+D 
Sbjct: 118 RARFSALIPREIHEAVQHLARPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDV 177

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           +G++RN+VLSYGPCQFPTLGF+VER+WEIQAHEPEEFW INCSHTS+EGTA+F W+RGH+
Sbjct: 178 SGEERNMVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGTASFIWIRGHL 237

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY+ AV+IYEMCV EP AT
Sbjct: 238 FDYSSAVVIYEMCVHEPMAT 257



 Score = 87.4 bits (215), Expect(2) = 4e-83
 Identities = 42/58 (72%), Positives = 50/58 (86%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV+  P+  V  VR+Q+KLKYPPYPL+T+EL+KRASR  RMSSEHTMKVAE+LYQAGF
Sbjct: 250 CVHE-PMATVQNVRNQEKLKYPPYPLSTVELQKRASRCCRMSSEHTMKVAEELYQAGF 306


>ref|NP_201197.1| topoisomerase 3alpha [Arabidopsis thaliana]
           gi|8777305|dbj|BAA96895.1| DNA topoisomerase III
           [Arabidopsis thaliana] gi|169218912|gb|ACA50279.1|
           topoisomerase 3 alpha [Arabidopsis thaliana]
           gi|332010433|gb|AED97816.1| topoisomerase 3alpha
           [Arabidopsis thaliana]
          Length = 926

 Score =  249 bits (635), Expect(2) = 2e-82
 Identities = 115/140 (82%), Positives = 125/140 (89%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RA FSALIDRDIHEA Q L  PNQLFA+AVD RQEIDLRIGASFTRFQTMLLRD F +D 
Sbjct: 150 RAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQEIDLRIGASFTRFQTMLLRDRFAIDS 209

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TG++R+ V+SYGPCQFPTLGF+VERYWEIQAHEPEEFW INCSH SEEG ATFNWMRGH+
Sbjct: 210 TGEERSRVISYGPCQFPTLGFIVERYWEIQAHEPEEFWTINCSHQSEEGLATFNWMRGHL 269

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY  AVI+YEMCV+EPTAT
Sbjct: 270 FDYASAVILYEMCVEEPTAT 289



 Score = 83.6 bits (205), Expect(2) = 2e-82
 Identities = 39/58 (67%), Positives = 46/58 (79%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV      ++     +++ KYPPYPLNTIELEKRASRYFR+SSEHTMKVAE+LYQAGF
Sbjct: 282 CVEEPTATVMNVPHPRERFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGF 339


>ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
           lyrata] gi|297310711|gb|EFH41135.1| hypothetical protein
           ARALYDRAFT_496584 [Arabidopsis lyrata subsp. lyrata]
          Length = 923

 Score =  249 bits (635), Expect(2) = 2e-82
 Identities = 115/140 (82%), Positives = 125/140 (89%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RA FSALIDRDIHEA Q L  PNQLFA+AVD RQEIDLRIGASFTRFQTMLLRD F +D 
Sbjct: 150 RAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQEIDLRIGASFTRFQTMLLRDRFAIDS 209

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TG++R+ V+SYGPCQFPTLGF+VERYWEIQAHEPEEFW INCSH SEEG ATFNWMRGH+
Sbjct: 210 TGEERSRVISYGPCQFPTLGFIVERYWEIQAHEPEEFWTINCSHQSEEGLATFNWMRGHL 269

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY  AVI+YEMCV+EPTAT
Sbjct: 270 FDYASAVILYEMCVEEPTAT 289



 Score = 83.6 bits (205), Expect(2) = 2e-82
 Identities = 39/58 (67%), Positives = 46/58 (79%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV      ++     +++ KYPPYPLNTIELEKRASRYFR+SSEHTMKVAE+LYQAGF
Sbjct: 282 CVEEPTATVMNVPHPRERFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGF 339


>ref|XP_006279975.1| hypothetical protein CARUB_v10025845mg [Capsella rubella]
           gi|482548679|gb|EOA12873.1| hypothetical protein
           CARUB_v10025845mg [Capsella rubella]
          Length = 919

 Score =  247 bits (631), Expect(2) = 5e-82
 Identities = 114/140 (81%), Positives = 125/140 (89%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RA FSALIDR+IHEA Q L  PNQLFA+AVD RQEIDLRIGASFTRFQTMLLRD F +D 
Sbjct: 150 RAHFSALIDREIHEAVQNLRDPNQLFAEAVDARQEIDLRIGASFTRFQTMLLRDRFAIDS 209

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TG++R+ V+SYGPCQFPTLGF+VERYWEIQAHEPEEFW INCSH SEEG ATFNWMRGH+
Sbjct: 210 TGEERSRVISYGPCQFPTLGFIVERYWEIQAHEPEEFWTINCSHQSEEGIATFNWMRGHL 269

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY  AVI+YEMCV+EPTAT
Sbjct: 270 FDYASAVILYEMCVEEPTAT 289



 Score = 83.6 bits (205), Expect(2) = 5e-82
 Identities = 39/58 (67%), Positives = 46/58 (79%)
 Frame = +2

Query: 395 CVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGF 568
           CV      ++     +++ KYPPYPLNTIELEKRASRYFR+SSEHTMKVAE+LYQAGF
Sbjct: 282 CVEEPTATVMNVPHPRERFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGF 339


>tpg|DAA43539.1| TPA: hypothetical protein ZEAMMB73_751776 [Zea mays]
          Length = 329

 Score =  252 bits (643), Expect(2) = 3e-81
 Identities = 114/140 (81%), Positives = 130/140 (92%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IHE+ Q L RPN+LFADAVD RQEIDLRIGASFTRFQTMLL+DAFV+D 
Sbjct: 150 RARFSALIDREIHESVQHLGRPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVIDV 209

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
           TGD+R+LVLSYGPCQFPTLGF+VER+WEIQAHEPEEFW INC+HTS+EGTA+F W+RGH+
Sbjct: 210 TGDERSLVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCTHTSDEGTASFGWIRGHL 269

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDY+CA+ IYEMCV EP AT
Sbjct: 270 FDYSCAISIYEMCVSEPMAT 289



 Score = 76.3 bits (186), Expect(2) = 3e-81
 Identities = 34/44 (77%), Positives = 40/44 (90%)
 Frame = +2

Query: 410 PLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKV 541
           P+  V  VR+Q+KLKYPPYPL+T+EL+KRASRYFRMSSEHTMKV
Sbjct: 286 PMATVQNVRNQEKLKYPPYPLSTVELQKRASRYFRMSSEHTMKV 329


>emb|CBI37515.3| unnamed protein product [Vitis vinifera]
          Length = 373

 Score =  272 bits (696), Expect = 4e-71
 Identities = 128/154 (83%), Positives = 138/154 (89%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IHE+ Q LVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFV+DF
Sbjct: 143 RARFSALIDREIHESVQNLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVLDF 202

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
             DDRNLVLSYGPCQFPTLGFVVERYWEIQ+HEPEEFW INCSH S+EGT+TFNWMR H+
Sbjct: 203 AADDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFWTINCSHKSDEGTSTFNWMRAHL 262

Query: 361 FDYTCAVIIYEMCVQEPTATGCKS*RSTKAEVSP 462
           FDYTCAVIIYEMC+QEPTAT  K  +  K +  P
Sbjct: 263 FDYTCAVIIYEMCIQEPTATVTKVRQQEKLKYPP 296



 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 46/67 (68%), Positives = 53/67 (79%)
 Frame = +2

Query: 368 TLVLL*FMRCVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAE 547
           T  ++ +  C+ + P   V KVR Q+KLKYPP+PLNTIELEKRASRYF MSSEHTMKVAE
Sbjct: 266 TCAVIIYEMCI-QEPTATVTKVRQQEKLKYPPHPLNTIELEKRASRYFHMSSEHTMKVAE 324

Query: 548 DLYQAGF 568
           DLYQ GF
Sbjct: 325 DLYQTGF 331


>ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
          Length = 914

 Score =  272 bits (696), Expect = 4e-71
 Identities = 128/154 (83%), Positives = 138/154 (89%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IHE+ Q LVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFV+DF
Sbjct: 143 RARFSALIDREIHESVQNLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVLDF 202

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
             DDRNLVLSYGPCQFPTLGFVVERYWEIQ+HEPEEFW INCSH S+EGT+TFNWMR H+
Sbjct: 203 AADDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFWTINCSHKSDEGTSTFNWMRAHL 262

Query: 361 FDYTCAVIIYEMCVQEPTATGCKS*RSTKAEVSP 462
           FDYTCAVIIYEMC+QEPTAT  K  +  K +  P
Sbjct: 263 FDYTCAVIIYEMCIQEPTATVTKVRQQEKLKYPP 296



 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 46/67 (68%), Positives = 53/67 (79%)
 Frame = +2

Query: 368 TLVLL*FMRCVYRNPLQLVAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAE 547
           T  ++ +  C+ + P   V KVR Q+KLKYPP+PLNTIELEKRASRYF MSSEHTMKVAE
Sbjct: 266 TCAVIIYEMCI-QEPTATVTKVRQQEKLKYPPHPLNTIELEKRASRYFHMSSEHTMKVAE 324

Query: 548 DLYQAGF 568
           DLYQ GF
Sbjct: 325 DLYQTGF 331


>gb|EYU20555.1| hypothetical protein MIMGU_mgv1a019308mg [Mimulus guttatus]
          Length = 346

 Score =  226 bits (575), Expect(2) = 2e-69
 Identities = 107/140 (76%), Positives = 120/140 (85%)
 Frame = +1

Query: 1   RARFSALIDRDIHEAAQGLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVVDF 180
           RARFSALIDR+IH+A Q LVRPNQLFADAVDVRQEIDL IGASFTRFQTMLL+DAFV+DF
Sbjct: 154 RARFSALIDREIHDAVQHLVRPNQLFADAVDVRQEIDLWIGASFTRFQTMLLKDAFVLDF 213

Query: 181 TGDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWAINCSHTSEEGTATFNWMRGHI 360
             ++RN++LSYGPCQ         R+WEIQ+HEPEEFW INC+H SEEGTATF+WMRGH+
Sbjct: 214 ATEERNVILSYGPCQ---------RFWEIQSHEPEEFWTINCTHNSEEGTATFSWMRGHL 264

Query: 361 FDYTCAVIIYEMCVQEPTAT 420
           FDYTCA IIYEMCV E  AT
Sbjct: 265 FDYTCATIIYEMCVLESNAT 284



 Score = 63.2 bits (152), Expect(2) = 2e-69
 Identities = 29/38 (76%), Positives = 34/38 (89%)
 Frame = +2

Query: 422 VAKVRDQQKLKYPPYPLNTIELEKRASRYFRMSSEHTM 535
           V  VR+Q+K +YPP+PL+TIELEKRASRYFRMSSE TM
Sbjct: 285 VTNVRNQEKPRYPPHPLSTIELEKRASRYFRMSSEQTM 322