BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00057207
         (342 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus]          229   3e-58
gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira]        223   3e-56
ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]...   200   2e-49
ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucife...   200   2e-49
gb|ABD93723.1| RNA polymerase beta chain [Nelumbo nucifera]           200   2e-49
gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra]         200   2e-49
ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) ...   197   1e-48
ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) ...   197   1e-48
gb|ABD93717.1| RNA polymerase beta chain [Trochodendron aralioides]   197   1e-48
gb|ABD93718.1| RNA polymerase beta chain [Tetracentron sinense]       197   1e-48
gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berb...   195   6e-48
gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri]     195   6e-48
gb|AHE41665.1| RNA polymerase beta' subunit, partial (chloroplas...   194   1e-47
gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Stap...   193   2e-47
gb|ABD93773.1| RNA polymerase beta chain [Chimonanthus praecox]       193   2e-47
gb|ABV65782.1| RNA polymerase beta'' subunit, partial (chloropla...   192   3e-47
ref|YP_001294174.1| RNA polymerase beta' subunit [Buxus microphy...   192   3e-47
gb|ABD93716.1| RNA polymerase beta chain [Buxus sempervirens]         192   3e-47
sp|Q7YJY0.1|RPOC2_CALFG RecName: Full=DNA-directed RNA polymeras...   192   4e-47
ref|YP_001671673.1| RNA polymerase beta'' subunit [Carica papaya...   192   4e-47

>gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus]
          Length = 865

 Score =  229 bits (584), Expect = 3e-58
 Identities = 113/113 (100%), Positives = 113/113 (100%)
 Frame = +2

Query: 2   ADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRR 181
           ADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRR
Sbjct: 117 ADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRR 176

Query: 182 NSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           NSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP
Sbjct: 177 NSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 229


>gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira]
          Length = 774

 Score =  223 bits (567), Expect = 3e-56
 Identities = 108/112 (96%), Positives = 111/112 (99%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           DSDLLAKRRRNRFIIPFRSNQEQE+E+IPRSGISMEIPINGIFRRNSILAYFDDPRYRRN
Sbjct: 32  DSDLLAKRRRNRFIIPFRSNQEQEEEIIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 91

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQ KIDRFFFIPEEVHILP
Sbjct: 92  SSGITKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQMKIDRFFFIPEEVHILP 143


>ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]
           gi|224474124|gb|ACN49313.1| RNA polymerase beta' subunit
           [Nelumbo lutea] gi|383286882|gb|AFH01531.1| RNA
           polymerase beta'' subunit (chloroplast) [Nelumbo lutea]
          Length = 1390

 Score =  200 bits (508), Expect = 2e-49
 Identities = 97/112 (86%), Positives = 106/112 (94%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFIIPF+SNQE+EKEL+PR+GIS+EIPINGIFRRNSILAYFDDPRYRRN
Sbjct: 568 NSDLLAKRRRNRFIIPFQSNQEREKELMPRAGISIEIPINGIFRRNSILAYFDDPRYRRN 627

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYR  KEFR KYQKK+DRFFFIPEEVHILP
Sbjct: 628 SSGITKYGTIEVHSIVKKEDLIEYRRAKEFRPKYQKKVDRFFFIPEEVHILP 679


>ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucifera]
           gi|224474212|gb|ACN49398.1| RNA polymerase beta' subunit
           [Nelumbo nucifera] gi|290489544|gb|ADD31156.1| RNA
           polymerase beta'' subunit protein [Nelumbo nucifera]
           gi|383286787|gb|AFH01437.1| RNA polymerase beta''
           subunit (chloroplast) [Nelumbo nucifera]
           gi|519666902|gb|AGO98514.1| RNA polymerase beta' subunit
           (chloroplast) [Nelumbo nucifera]
          Length = 1390

 Score =  200 bits (508), Expect = 2e-49
 Identities = 97/112 (86%), Positives = 106/112 (94%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFIIPF+SNQE+EKEL+PR+GIS+EIPINGIFRRNSILAYFDDPRYRRN
Sbjct: 568 NSDLLAKRRRNRFIIPFQSNQEREKELMPRAGISIEIPINGIFRRNSILAYFDDPRYRRN 627

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYR  KEFR KYQKK+DRFFFIPEEVHILP
Sbjct: 628 SSGITKYGTIEVHSIVKKEDLIEYRRAKEFRPKYQKKVDRFFFIPEEVHILP 679


>gb|ABD93723.1| RNA polymerase beta chain [Nelumbo nucifera]
          Length = 866

 Score =  200 bits (508), Expect = 2e-49
 Identities = 97/112 (86%), Positives = 106/112 (94%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFIIPF+SNQE+EKEL+PR+GIS+EIPINGIFRRNSILAYFDDPRYRRN
Sbjct: 119 NSDLLAKRRRNRFIIPFQSNQEREKELMPRAGISIEIPINGIFRRNSILAYFDDPRYRRN 178

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYR  KEFR KYQKK+DRFFFIPEEVHILP
Sbjct: 179 SSGITKYGTIEVHSIVKKEDLIEYRRAKEFRPKYQKKVDRFFFIPEEVHILP 230


>gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra]
          Length = 796

 Score =  200 bits (508), Expect = 2e-49
 Identities = 97/112 (86%), Positives = 104/112 (92%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SD LAKRRRNRFIIPF+SNQE+EKELIPRSGIS+EIPINGIFRRNSILAYFDDPRYRRN
Sbjct: 118 NSDFLAKRRRNRFIIPFQSNQEREKELIPRSGISIEIPINGIFRRNSILAYFDDPRYRRN 177

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYRG KEFR KYQ K+DRFFFIPEEVHI P
Sbjct: 178 SSGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFFFIPEEVHIFP 229


>ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense]
           gi|479279193|gb|AGJ72047.1| RNA polymerase beta''
           subunit (chloroplast) [Tetracentron sinense]
          Length = 1378

 Score =  197 bits (501), Expect = 1e-48
 Identities = 96/112 (85%), Positives = 105/112 (93%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFIIPF+SNQE+EKEL+PRSGIS+EIPINGIFRRNSILAYFDDPRYRR 
Sbjct: 567 NSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIEIPINGIFRRNSILAYFDDPRYRRK 626

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYRG KEFR KYQ K+DRFFFIPEEV+ILP
Sbjct: 627 SSGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFFFIPEEVYILP 678


>ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron
           aralioides] gi|157690196|gb|ABV65785.1| RNA polymerase
           beta'' subunit (chloroplast) [Trochodendron aralioides]
           gi|479279286|gb|AGJ72139.1| RNA polymerase beta''
           subunit (chloroplast) [Trochodendron aralioides]
          Length = 1381

 Score =  197 bits (501), Expect = 1e-48
 Identities = 96/112 (85%), Positives = 105/112 (93%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFIIPF+SNQE+EKEL+PRSGIS+EIPINGIFRRNSILAYFDDPRYRR 
Sbjct: 567 NSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIEIPINGIFRRNSILAYFDDPRYRRK 626

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYRG KEFR KYQ K+DRFFFIPEEV+ILP
Sbjct: 627 SSGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFFFIPEEVYILP 678


>gb|ABD93717.1| RNA polymerase beta chain [Trochodendron aralioides]
          Length = 865

 Score =  197 bits (501), Expect = 1e-48
 Identities = 96/112 (85%), Positives = 105/112 (93%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFIIPF+SNQE+EKEL+PRSGIS+EIPINGIFRRNSILAYFDDPRYRR 
Sbjct: 118 NSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIEIPINGIFRRNSILAYFDDPRYRRK 177

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYRG KEFR KYQ K+DRFFFIPEEV+ILP
Sbjct: 178 SSGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFFFIPEEVYILP 229


>gb|ABD93718.1| RNA polymerase beta chain [Tetracentron sinense]
          Length = 792

 Score =  197 bits (501), Expect = 1e-48
 Identities = 96/112 (85%), Positives = 105/112 (93%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFIIPF+SNQE+EKEL+PRSGIS+EIPINGIFRRNSILAYFDDPRYRR 
Sbjct: 48  NSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIEIPINGIFRRNSILAYFDDPRYRRK 107

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYRG KEFR KYQ K+DRFFFIPEEV+ILP
Sbjct: 108 SSGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQMKVDRFFFIPEEVYILP 159


>gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis
           corallina]
          Length = 1389

 Score =  195 bits (495), Expect = 6e-48
 Identities = 95/112 (84%), Positives = 104/112 (92%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRR+NRFIIPF+S QE+EKEL+PRSGIS+EIPINGIFRRNSILAYFDDPRYRR 
Sbjct: 567 NSDLLAKRRKNRFIIPFQSIQEREKELMPRSGISIEIPINGIFRRNSILAYFDDPRYRRK 626

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYRG KEFR KYQ K+DRFFFIPEEVHILP
Sbjct: 627 SSGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEVHILP 678


>gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri]
          Length = 829

 Score =  195 bits (495), Expect = 6e-48
 Identities = 95/112 (84%), Positives = 104/112 (92%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRR+NRFIIPF+S QE+EKEL+PRSGIS+EIPINGIFRRNSILAYFDDPRYRR 
Sbjct: 84  NSDLLAKRRKNRFIIPFQSIQEREKELMPRSGISIEIPINGIFRRNSILAYFDDPRYRRK 143

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYRG KEFR KYQ K+DRFFFIPEEVHILP
Sbjct: 144 SSGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEVHILP 195


>gb|AHE41665.1| RNA polymerase beta' subunit, partial (chloroplast) [Philadelphus
           coronarius]
          Length = 1368

 Score =  194 bits (492), Expect = 1e-47
 Identities = 95/112 (84%), Positives = 103/112 (91%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFIIP +S QE+EKEL+PRSGIS+EIPINGIFRRNSILAYFDDPRYRR 
Sbjct: 550 NSDLLAKRRRNRFIIPLQSIQEREKELMPRSGISIEIPINGIFRRNSILAYFDDPRYRRK 609

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYRG KEFR KYQ K+DRFFFIPEEVHILP
Sbjct: 610 SSGITKYGTIEVHSIVKKEDLIEYRGVKEFRRKYQMKVDRFFFIPEEVHILP 661


>gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Staphylea colchica]
          Length = 1390

 Score =  193 bits (491), Expect = 2e-47
 Identities = 94/112 (83%), Positives = 103/112 (91%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNR IIPF+S QEQEKEL+  SGIS+EIPINGIFRRNSILAYFDDPRYRRN
Sbjct: 567 NSDLLAKRRRNRLIIPFQSIQEQEKELLSHSGISIEIPINGIFRRNSILAYFDDPRYRRN 626

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT GVHSIVKK+ LIEYRG KEF+ KY+ K+DRFFFIPEEVHILP
Sbjct: 627 SSGITKYGTIGVHSIVKKEDLIEYRGVKEFKPKYKMKVDRFFFIPEEVHILP 678


>gb|ABD93773.1| RNA polymerase beta chain [Chimonanthus praecox]
          Length = 857

 Score =  193 bits (490), Expect = 2e-47
 Identities = 94/112 (83%), Positives = 104/112 (92%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFIIPF+S+QE+EKEL+PRSGIS+EIPINGI RRNSILAYFDDPRYRR+
Sbjct: 118 NSDLLAKRRRNRFIIPFQSDQEREKELMPRSGISIEIPINGILRRNSILAYFDDPRYRRS 177

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT GV SIVKK+ LIEYR  KEFR KYQ K+DRFFFIPEEVHILP
Sbjct: 178 SSGITKYGTTGVDSIVKKEDLIEYRRAKEFRPKYQMKVDRFFFIPEEVHILP 229


>gb|ABV65782.1| RNA polymerase beta'' subunit, partial (chloroplast) [Tapiscia
           sinensis]
          Length = 1280

 Score =  192 bits (489), Expect = 3e-47
 Identities = 92/110 (83%), Positives = 103/110 (93%)
 Frame = +2

Query: 11  DLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRNSS 190
           DLLAKRRRNRFIIPF+S QEQEKEL+PRSGIS+EIPINGIFRRNSILA+FDDP+YRRNSS
Sbjct: 536 DLLAKRRRNRFIIPFQSIQEQEKELMPRSGISIEIPINGIFRRNSILAFFDDPQYRRNSS 595

Query: 191 GVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           G+TKYGT G HSIVKK+ +IEYRG K+F+ KYQ K+DRFFFIPEEVHILP
Sbjct: 596 GITKYGTIGAHSIVKKEDVIEYRGVKKFKPKYQMKVDRFFFIPEEVHILP 645


>ref|YP_001294174.1| RNA polymerase beta' subunit [Buxus microphylla]
           gi|212277016|sp|A6MM26.1|RPOC2_BUXMI RecName:
           Full=DNA-directed RNA polymerase subunit beta'';
           AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
           polymerase subunit beta''; Short=RNA polymerase subunit
           beta'' gi|146762275|gb|ABQ45239.1| RNA polymerase beta'
           subunit [Buxus microphylla]
          Length = 1391

 Score =  192 bits (489), Expect = 3e-47
 Identities = 94/112 (83%), Positives = 103/112 (91%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFI+P +SNQE+EKEL+P SGIS+EIPINGIFRRNSILAYFDDP YRR 
Sbjct: 567 NSDLLAKRRRNRFILPLQSNQEREKELMPCSGISIEIPINGIFRRNSILAYFDDPLYRRK 626

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYRG KEFRSKYQ K+DRFFFIPEEVHILP
Sbjct: 627 SSGITKYGTIEVHSIVKKEDLIEYRGAKEFRSKYQMKVDRFFFIPEEVHILP 678


>gb|ABD93716.1| RNA polymerase beta chain [Buxus sempervirens]
          Length = 865

 Score =  192 bits (489), Expect = 3e-47
 Identities = 94/112 (83%), Positives = 103/112 (91%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFI+P +SNQE+EKEL+P SGIS+EIPINGIFRRNSILAYFDDP YRR 
Sbjct: 118 NSDLLAKRRRNRFILPLQSNQEREKELMPCSGISIEIPINGIFRRNSILAYFDDPLYRRK 177

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT  VHSIVKK+ LIEYRG KEFRSKYQ K+DRFFFIPEEVHILP
Sbjct: 178 SSGITKYGTIEVHSIVKKEDLIEYRGAKEFRSKYQMKVDRFFFIPEEVHILP 229


>sp|Q7YJY0.1|RPOC2_CALFG RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta''; Short=RNA polymerase subunit beta''
           gi|32399369|emb|CAD28711.1| RNA polymerase beta'
           subunit-2 [Calycanthus floridus var. glaucus]
          Length = 1377

 Score =  192 bits (488), Expect = 4e-47
 Identities = 94/112 (83%), Positives = 104/112 (92%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFIIPF+S+QE+EKEL+PRSGIS+EIPINGI RRNSILAYFDDPRYRR+
Sbjct: 568 NSDLLAKRRRNRFIIPFQSDQEREKELMPRSGISIEIPINGILRRNSILAYFDDPRYRRS 627

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+TKYGT GV SIVKK+ LIEYR  KEFR KYQ K+DRFFFIPEEVHILP
Sbjct: 628 SSGITKYGTIGVDSIVKKEDLIEYRRAKEFRPKYQMKVDRFFFIPEEVHILP 679


>ref|YP_001671673.1| RNA polymerase beta'' subunit [Carica papaya]
           gi|212277035|sp|B1A925.1|RPOC2_CARPA RecName:
           Full=DNA-directed RNA polymerase subunit beta'';
           AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
           polymerase subunit beta''; Short=RNA polymerase subunit
           beta'' gi|166344122|gb|ABY86772.1| RNA polymerase beta''
           chain [Carica papaya]
          Length = 1387

 Score =  192 bits (488), Expect = 4e-47
 Identities = 92/112 (82%), Positives = 104/112 (92%)
 Frame = +2

Query: 5   DSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIPINGIFRRNSILAYFDDPRYRRN 184
           +SDLLAKRRRNRFIIPF+S QEQEKEL+PRSGIS+EIPINGIFRRNSILA+FDDPRYRR 
Sbjct: 563 NSDLLAKRRRNRFIIPFQSIQEQEKELMPRSGISIEIPINGIFRRNSILAFFDDPRYRRK 622

Query: 185 SSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKIDRFFFIPEEVHILP 340
           SSG+ KYGT G HSIVKK+ +IEYRG K+F++KYQ K+DRFFFIPEEVHILP
Sbjct: 623 SSGILKYGTIGAHSIVKKEDVIEYRGVKKFKTKYQMKVDRFFFIPEEVHILP 674