BLASTX nr result
ID: Cocculus23_contig00057066
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00057066
(264 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 70 8e-12
ref|XP_004977878.1| PREDICTED: uncharacterized protein LOC101763... 70 1e-11
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat... 69 1e-11
ref|XP_004980298.1| PREDICTED: uncharacterized protein LOC101759... 69 1e-11
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 68 3e-11
ref|XP_004292437.1| PREDICTED: uncharacterized protein LOC101306... 73 4e-11
gb|ABC49720.1| gag-pol polyprotein [Fargesia robusta] 68 4e-11
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 67 5e-11
gb|AAX14648.1| gag-pol polyprotein [Cenchrus compressus] 67 5e-11
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 67 7e-11
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 67 7e-11
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 67 7e-11
emb|CAE02904.3| OSJNBb0045P24.9 [Oryza sativa Japonica Group] 69 7e-11
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 63 8e-11
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 63 8e-11
gb|AAM74438.1|AC123594_21 Putative retroelement [Oryza sativa Ja... 66 1e-10
gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subc... 66 1e-10
gb|AAM08551.1|AC092749_4 Putative retroelement [Oryza sativa Jap... 66 1e-10
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group] 67 1e-10
emb|CAD40072.1| OSJNBa0085C10.25 [Oryza sativa Japonica Group] 71 2e-10
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 70.5 bits (171), Expect(2) = 8e-12
Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Frame = +1
Query: 13 LLAREAN-DQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSLPNLSH 189
LL+RE N ++ T+VP + L+Q F++VFP+EL GL P RGI H IDL+PGS LPN
Sbjct: 562 LLSREVNQEENTVVPTAVAPLIQRFQEVFPDELPSGLPPLRGIEHHIDLVPGSVLPNKPA 621
Query: 190 YRMSP 204
YR P
Sbjct: 622 YRCDP 626
Score = 25.0 bits (53), Expect(2) = 8e-12
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
EL Q+EEL+ KGF+R
Sbjct: 631 ELQHQIEELMAKGFVR 646
>ref|XP_004977878.1| PREDICTED: uncharacterized protein LOC101763064 [Setaria italica]
Length = 1131
Score = 69.7 bits (169), Expect(2) = 1e-11
Identities = 32/52 (61%), Positives = 40/52 (76%)
Frame = +1
Query: 49 VPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSLPNLSHYRMSP 204
+P +T LLQE+ D+FPNE+ GL P RGI HQIDLIPG+SLPN + YR +P
Sbjct: 704 LPPAVTNLLQEYADIFPNEVPPGLPPTRGIEHQIDLIPGASLPNRAPYRTNP 755
Score = 25.4 bits (54), Expect(2) = 1e-11
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQV+ELL KG++R
Sbjct: 760 EIQRQVQELLDKGYVR 775
>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
Length = 1358
Score = 69.3 bits (168), Expect(2) = 1e-11
Identities = 33/53 (62%), Positives = 40/53 (75%)
Frame = +1
Query: 46 IVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSLPNLSHYRMSP 204
I+P++++ LL EF DVFP EL GL P RGI HQIDLIPG+SLPN YR +P
Sbjct: 619 IIPSDVSALLSEFADVFPEELPKGLPPIRGIEHQIDLIPGASLPNRPAYRTNP 671
Score = 25.4 bits (54), Expect(2) = 1e-11
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 186 ALQNESHQYDEL*RQVEELLQKGFIR 263
A + + E+ RQV+ELLQ GFI+
Sbjct: 666 AYRTNPDEAKEIQRQVDELLQAGFIQ 691
>ref|XP_004980298.1| PREDICTED: uncharacterized protein LOC101759439 [Setaria italica]
Length = 696
Score = 69.3 bits (168), Expect(2) = 1e-11
Identities = 32/52 (61%), Positives = 40/52 (76%)
Frame = +1
Query: 49 VPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSLPNLSHYRMSP 204
+P +T LLQE+ D+FPNE+ GL P RGI HQIDLIPG+SLPN + YR +P
Sbjct: 312 LPPVVTNLLQEYADIFPNEVPPGLPPTRGIEHQIDLIPGASLPNRAPYRTNP 363
Score = 25.4 bits (54), Expect(2) = 1e-11
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQV+ELL KG++R
Sbjct: 368 EIQRQVQELLDKGYVR 383
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 68.2 bits (165), Expect(2) = 3e-11
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y L+ ++A D +P IT +LQE+ DVFP+E+ GL P RGI HQIDLIPG+SL
Sbjct: 662 YALVCKDALISIQDMQHSLPPVITNILQEYSDVFPSEIPEGLPPIRGIEHQIDLIPGASL 721
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 722 PNRAPYRTNP 731
Score = 25.4 bits (54), Expect(2) = 3e-11
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQV+ELL KG++R
Sbjct: 736 EIQRQVQELLDKGYVR 751
>ref|XP_004292437.1| PREDICTED: uncharacterized protein LOC101306407 [Fragaria vesca
subsp. vesca]
Length = 1300
Score = 73.2 bits (178), Expect = 4e-11
Identities = 37/66 (56%), Positives = 43/66 (65%)
Frame = +1
Query: 7 YELLAREANDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSLPNLS 186
Y L+ REAND P + +LL+EF DV P EL GL P R I H ID +PG+SLPN
Sbjct: 614 YMLIGREANDNAHEAPEVVASLLKEFVDVVPEELPVGLPPLRDIQHHIDFVPGASLPNKP 673
Query: 187 HYRMSP 204
HYRMSP
Sbjct: 674 HYRMSP 679
>gb|ABC49720.1| gag-pol polyprotein [Fargesia robusta]
Length = 222
Score = 67.8 bits (164), Expect(2) = 4e-11
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y LL ++A + + VP +T LLQE+ DVFP ++ GL P RGI HQIDLIPG+SL
Sbjct: 109 YALLCKQALFSFEEVPSSVPPAVTNLLQEYMDVFPKDVPPGLPPVRGIEHQIDLIPGASL 168
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 169 PNRAPYRTNP 178
Score = 25.4 bits (54), Expect(2) = 4e-11
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQV+ELL KG++R
Sbjct: 183 EIQRQVQELLDKGYVR 198
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 67.0 bits (162), Expect(2) = 5e-11
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y + +EA D + +P +T +LQEF DVFP ++ GL P RGI HQIDLIPG+SL
Sbjct: 703 YAFVCKEALFSFEDVPSSLPPAVTNILQEFTDVFPQDVPPGLPPIRGIEHQIDLIPGASL 762
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 763 PNRAPYRTNP 772
Score = 25.8 bits (55), Expect(2) = 5e-11
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQV+ELL KG+IR
Sbjct: 777 EIMRQVQELLDKGYIR 792
>gb|AAX14648.1| gag-pol polyprotein [Cenchrus compressus]
Length = 207
Score = 67.4 bits (163), Expect(2) = 5e-11
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y L+ ++A D +P I +LQE+ DVFP+E+ GL P RGI HQIDLIPG+SL
Sbjct: 92 YALVCKDALISIQDMQHSLPPAIANILQEYSDVFPSEIPAGLPPIRGIEHQIDLIPGASL 151
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 152 PNRAPYRTNP 161
Score = 25.4 bits (54), Expect(2) = 5e-11
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQV+ELL KG++R
Sbjct: 166 EIQRQVQELLDKGYVR 181
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 67.0 bits (162), Expect(2) = 7e-11
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y L+ +E D +P +T LLQE+ D+FP E+ GL P RGI HQIDLIPG+SL
Sbjct: 687 YALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASL 746
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 747 PNRAPYRTNP 756
Score = 25.4 bits (54), Expect(2) = 7e-11
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQV+ELL KG++R
Sbjct: 761 EIQRQVQELLDKGYVR 776
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 67.0 bits (162), Expect(2) = 7e-11
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y L+ +E D +P +T LLQE+ D+FP E+ GL P RGI HQIDLIPG+SL
Sbjct: 583 YALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASL 642
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 643 PNRAPYRTNP 652
Score = 25.4 bits (54), Expect(2) = 7e-11
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQV+ELL KG++R
Sbjct: 657 EIQRQVQELLDKGYVR 672
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 67.0 bits (162), Expect(2) = 7e-11
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y L+ +E D +P +T LLQE+ D+FP E+ GL P RGI HQIDLIPG+SL
Sbjct: 687 YALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASL 746
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 747 PNRAPYRTNP 756
Score = 25.4 bits (54), Expect(2) = 7e-11
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQV+ELL KG++R
Sbjct: 761 EIQRQVQELLDKGYVR 776
>emb|CAE02904.3| OSJNBb0045P24.9 [Oryza sativa Japonica Group]
Length = 1361
Score = 69.3 bits (168), Expect(2) = 7e-11
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y L+ ++A +D + +P +T LLQ++EDVFP E+ GL P RGI HQIDLIPG+SL
Sbjct: 713 YFLICKQALVSLDDIASSIPPVVTNLLQKYEDVFPAEIPPGLPPMRGIEHQIDLIPGASL 772
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 773 PNRAAYRTNP 782
Score = 23.1 bits (48), Expect(2) = 7e-11
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 186 ALQNESHQYDEL*RQVEELLQKGFIR 263
A + + E+ +QVE+LL +G++R
Sbjct: 777 AYRTNPDETKEIQQQVEDLLDRGYVR 802
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 63.2 bits (152), Expect(2) = 8e-11
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = +1
Query: 49 VPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSLPNLSHYRMSP 204
+P +++LLQ FEDVFP++ GL P RGI HQID +PGS LPN YR +P
Sbjct: 660 LPNSVSSLLQNFEDVFPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNP 711
Score = 28.9 bits (63), Expect(2) = 8e-11
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 186 ALQNESHQYDEL*RQVEELLQKGFIR 263
A ++ + EL RQVEELL KGF+R
Sbjct: 706 AYRSNPEETKELQRQVEELLVKGFVR 731
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 63.2 bits (152), Expect(2) = 8e-11
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = +1
Query: 49 VPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSLPNLSHYRMSP 204
+P +++LLQ FEDVFP++ GL P RGI HQID +PGS LPN YR +P
Sbjct: 660 LPNSVSSLLQNFEDVFPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNP 711
Score = 28.9 bits (63), Expect(2) = 8e-11
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 186 ALQNESHQYDEL*RQVEELLQKGFIR 263
A ++ + EL RQVEELL KGF+R
Sbjct: 706 AYRSNPEETKELQRQVEELLVKGFVR 731
>gb|AAM74438.1|AC123594_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1450
Score = 66.2 bits (160), Expect(2) = 1e-10
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y L+ +E D +P +T LLQE+ D+FP E+ GL P RGI HQIDLIPG+SL
Sbjct: 594 YALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPLGLPPIRGIEHQIDLIPGASL 653
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 654 PNRAPYRTNP 663
Score = 25.4 bits (54), Expect(2) = 1e-10
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQV+ELL KG++R
Sbjct: 668 EIQRQVQELLDKGYVR 683
>gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1392
Score = 66.2 bits (160), Expect(2) = 1e-10
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y L+ +E D +P +T LLQE+ D+FP E+ GL P RGI HQIDLIPG+SL
Sbjct: 536 YALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPLGLPPIRGIEHQIDLIPGASL 595
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 596 PNRAPYRTNP 605
Score = 25.4 bits (54), Expect(2) = 1e-10
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQV+ELL KG++R
Sbjct: 610 EIQRQVQELLDKGYVR 625
>gb|AAM08551.1|AC092749_4 Putative retroelement [Oryza sativa Japonica Group]
Length = 1357
Score = 66.2 bits (160), Expect(2) = 1e-10
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y L+ +E D +P +T LLQE+ D+FP E+ GL P RGI HQIDLIPG+SL
Sbjct: 501 YALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPLGLPPIRGIEHQIDLIPGASL 560
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 561 PNRAPYRTNP 570
Score = 25.4 bits (54), Expect(2) = 1e-10
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQV+ELL KG++R
Sbjct: 575 EIQRQVQELLDKGYVR 590
>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
Length = 1170
Score = 67.0 bits (162), Expect(2) = 1e-10
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y L+ +E D +P +T LLQE+ D+FP E+ GL P RGI HQIDLIPG+SL
Sbjct: 320 YALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASL 379
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 380 PNRAPYRTNP 389
Score = 24.3 bits (51), Expect(2) = 1e-10
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +3
Query: 216 EL*RQVEELLQKGFIR 263
E+ RQ++ELL KG++R
Sbjct: 394 EIQRQMQELLDKGYVR 409
>emb|CAD40072.1| OSJNBa0085C10.25 [Oryza sativa Japonica Group]
Length = 625
Score = 70.9 bits (172), Expect = 2e-10
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Frame = +1
Query: 7 YELLAREA----NDQ*TIVPAEITTLLQEFEDVFPNELIGGLLPKRGI*HQIDLIPGSSL 174
Y L+ ++A +D + +P +T LLQE+EDVFP E+ GL P RGI HQIDLIPG+SL
Sbjct: 364 YFLICKQALVSLDDIASSIPPVVTNLLQEYEDVFPAEIPPGLPPMRGIEHQIDLIPGASL 423
Query: 175 PNLSHYRMSP 204
PN + YR +P
Sbjct: 424 PNRAAYRTNP 433