BLASTX nr result
ID: Cocculus23_contig00056559
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00056559
(344 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN73347.1| hypothetical protein VITISV_037919 [Vitis vinifera] 94 2e-17
ref|XP_004235452.1| PREDICTED: pentatricopeptide repeat-containi... 91 2e-16
ref|XP_006356467.1| PREDICTED: pentatricopeptide repeat-containi... 88 1e-15
ref|NP_181553.1| pentatricopeptide repeat-containing protein [Ar... 87 2e-15
ref|XP_004512635.1| PREDICTED: pentatricopeptide repeat-containi... 87 3e-15
ref|XP_002879856.1| pentatricopeptide repeat-containing protein ... 87 3e-15
ref|XP_002512332.1| pentatricopeptide repeat-containing protein,... 87 3e-15
ref|XP_006292480.1| hypothetical protein CARUB_v10018709mg [Caps... 85 9e-15
ref|XP_006403033.1| hypothetical protein EUTSA_v10006093mg [Eutr... 85 1e-14
emb|CAB87857.1| putative protein [Arabidopsis thaliana] gi|26450... 84 2e-14
ref|XP_002272959.2| PREDICTED: uncharacterized protein LOC100251... 84 2e-14
ref|NP_191162.2| pentatricopeptide repeat-containing protein [Ar... 84 2e-14
ref|XP_007219888.1| hypothetical protein PRUPE_ppb013270mg, part... 82 6e-14
ref|XP_004515109.1| PREDICTED: pentatricopeptide repeat-containi... 81 1e-13
emb|CBI25450.3| unnamed protein product [Vitis vinifera] 81 2e-13
ref|XP_006294563.1| hypothetical protein CARUB_v10023599mg [Caps... 80 2e-13
ref|XP_002876347.1| hypothetical protein ARALYDRAFT_486042 [Arab... 80 3e-13
ref|XP_004308947.1| PREDICTED: pentatricopeptide repeat-containi... 78 1e-12
gb|EYU43433.1| hypothetical protein MIMGU_mgv1a021376mg [Mimulus... 76 5e-12
ref|XP_007008912.1| Tetratricopeptide repeat-like superfamily pr... 74 3e-11
>emb|CAN73347.1| hypothetical protein VITISV_037919 [Vitis vinifera]
Length = 330
Score = 94.0 bits (232), Expect = 2e-17
Identities = 46/93 (49%), Positives = 64/93 (68%)
Frame = +1
Query: 4 LLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSILV 183
+LRRM ++ VP +YSTHAHVI GL+ LG + +AVEFV GG+D++LD E+FG LGS L+
Sbjct: 232 VLRRMEDDGVPILYSTHAHVINGLLKLGYYAQAVEFVMICGGKDKKLDEESFGILGSRLI 291
Query: 184 RKRRVVEAKIVFDEMDERELVVGEKLRRDYMSL 282
+R EAK+V EM R +V+ +D+ L
Sbjct: 292 NLKRFEEAKLVLKEMRRRGIVMRSNELQDFYEL 324
>ref|XP_004235452.1| PREDICTED: pentatricopeptide repeat-containing protein At2g40240,
mitochondrial-like [Solanum lycopersicum]
Length = 366
Score = 90.9 bits (224), Expect = 2e-16
Identities = 45/97 (46%), Positives = 66/97 (68%)
Frame = +1
Query: 1 ALLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSIL 180
A++RRM ++ VP +YSTHAH+I+ L+ + +AVEFVR+ GRD +LD ENFG L + L
Sbjct: 229 AVVRRMLDDGVPPLYSTHAHIIRALLKYNYYEQAVEFVRSYAGRDAKLDAENFGILATRL 288
Query: 181 VRKRRVVEAKIVFDEMDERELVVGEKLRRDYMSLLEA 291
+ + ++ EAK + EM ER LV+G +L+ Y L A
Sbjct: 289 ITRSKLEEAKKLVKEMSERRLVMGPRLKDFYELSLHA 325
>ref|XP_006356467.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56030-like isoform X1 [Solanum tuberosum]
gi|565380133|ref|XP_006356468.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g56030-like isoform X2 [Solanum tuberosum]
Length = 329
Score = 87.8 bits (216), Expect = 1e-15
Identities = 43/101 (42%), Positives = 66/101 (65%)
Frame = +1
Query: 1 ALLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSIL 180
A++RRM ++ VP +Y THAH+I + + +AVEFVR+ GRD +LD ENFG L + L
Sbjct: 229 AVVRRMLDDGVPPLYCTHAHIIGAFLKYNYYEQAVEFVRSYAGRDAKLDAENFGILATRL 288
Query: 181 VRKRRVVEAKIVFDEMDERELVVGEKLRRDYMSLLEATGLQ 303
+ + ++ EAK + EM ER LV+G +L+ Y + + GL+
Sbjct: 289 ITRSKLEEAKKLVKEMSERRLVMGPRLKDFYELYVRSDGLR 329
>ref|NP_181553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75265350|sp|Q9S733.1|PP196_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g40240, mitochondrial; Flags: Precursor
gi|4587998|gb|AAD25939.1|AF085279_12 hypothetical
protein [Arabidopsis thaliana] gi|4586041|gb|AAD25659.1|
hypothetical protein [Arabidopsis thaliana]
gi|28393486|gb|AAO42164.1| unknown protein [Arabidopsis
thaliana] gi|28973567|gb|AAO64108.1| unknown protein
[Arabidopsis thaliana] gi|110737021|dbj|BAF00465.1|
hypothetical protein [Arabidopsis thaliana]
gi|330254707|gb|AEC09801.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 351
Score = 87.4 bits (215), Expect = 2e-15
Identities = 47/91 (51%), Positives = 61/91 (67%)
Frame = +1
Query: 1 ALLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSIL 180
A+LRRM E+ V +YSTHAHVI GLV G + +EFV A G+D LD E+FGFL L
Sbjct: 233 AILRRMEEDGVTVLYSTHAHVITGLVEGGYYALGLEFVMAYAGKDLRLDSESFGFLAGKL 292
Query: 181 VRKRRVVEAKIVFDEMDERELVVGEKLRRDY 273
V+++R EA IV EM R L +G++LR+ Y
Sbjct: 293 VKRKRYEEAMIVVKEMVMRGLRMGDELRQFY 323
>ref|XP_004512635.1| PREDICTED: pentatricopeptide repeat-containing protein At2g40240,
mitochondrial-like [Cicer arietinum]
Length = 336
Score = 86.7 bits (213), Expect = 3e-15
Identities = 47/96 (48%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Frame = +1
Query: 4 LLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSILV 183
++RRM ++ VP +YSTH HVI+GL+ + F EA+++VR G+D+ LD E FG LGS LV
Sbjct: 231 VVRRMVDDGVPMLYSTHMHVIEGLLKMNCFEEAMKYVRCFSGKDKALDCELFGCLGSKLV 290
Query: 184 RKRRVVEAKIVFDEMDERELVVGEKLRRDY-MSLLE 288
RV EA V EM++R L++G KL+ Y M+L E
Sbjct: 291 GFNRVKEAMFVLGEMEKRGLLMGYKLKNFYEMNLRE 326
>ref|XP_002879856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297325695|gb|EFH56115.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 338
Score = 86.7 bits (213), Expect = 3e-15
Identities = 47/89 (52%), Positives = 61/89 (68%)
Frame = +1
Query: 1 ALLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSIL 180
A+LRRM E+ V +YSTHAHVI GLV G + +EFV A G+D LD E+FGFL L
Sbjct: 233 AILRRMEEDCVTVLYSTHAHVIAGLVEGGYYALGLEFVMAYAGKDLGLDGESFGFLAGKL 292
Query: 181 VRKRRVVEAKIVFDEMDERELVVGEKLRR 267
V+++R EAKIV EM R L +G++LR+
Sbjct: 293 VKRKRFEEAKIVVKEMVMRGLRMGDELRQ 321
>ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548293|gb|EEF49784.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 619
Score = 86.7 bits (213), Expect = 3e-15
Identities = 46/90 (51%), Positives = 60/90 (66%)
Frame = +1
Query: 4 LLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSILV 183
+LRRM ++ V +YSTH HVI L+ LG + +A +FV GGRD D E FG L S L+
Sbjct: 522 VLRRMVDDGVHVLYSTHVHVINALLRLGCYVQATKFVMIFGGRDIAFDTEIFGILASKLI 581
Query: 184 RKRRVVEAKIVFDEMDERELVVGEKLRRDY 273
+ R EAK+V EM+ER LV+G+KL RDY
Sbjct: 582 KLERFEEAKLVLKEMEERGLVMGDKL-RDY 610
>ref|XP_006292480.1| hypothetical protein CARUB_v10018709mg [Capsella rubella]
gi|482561187|gb|EOA25378.1| hypothetical protein
CARUB_v10018709mg [Capsella rubella]
Length = 336
Score = 85.1 bits (209), Expect = 9e-15
Identities = 44/91 (48%), Positives = 61/91 (67%)
Frame = +1
Query: 1 ALLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSIL 180
A+LRRM E+ +P +Y+THAHVI +V G + +VEFV A G+D+ LD EN G L S L
Sbjct: 239 AILRRMDEQGLPVLYATHAHVIGVMVESGYYTLSVEFVMAYAGKDKRLDEENLGSLASKL 298
Query: 181 VRKRRVVEAKIVFDEMDERELVVGEKLRRDY 273
++++R EAK+V EM R L +G+ LR Y
Sbjct: 299 IKRKRFNEAKLVLKEMSVRGLRMGDALRGFY 329
>ref|XP_006403033.1| hypothetical protein EUTSA_v10006093mg [Eutrema salsugineum]
gi|557104132|gb|ESQ44486.1| hypothetical protein
EUTSA_v10006093mg [Eutrema salsugineum]
Length = 330
Score = 84.7 bits (208), Expect = 1e-14
Identities = 44/91 (48%), Positives = 59/91 (64%)
Frame = +1
Query: 1 ALLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSIL 180
A+LRRM EE +P +Y+THAHVI ++ G + VEFV A G+D+ LD EN G L S L
Sbjct: 231 AILRRMEEEGLPVLYATHAHVIAEMIESGYYALGVEFVMAYAGKDKRLDEENLGSLASKL 290
Query: 181 VRKRRVVEAKIVFDEMDERELVVGEKLRRDY 273
++++R EAK+V EM R L +G LR Y
Sbjct: 291 IKRKRFKEAKLVLKEMCVRGLRMGIALRDFY 321
>emb|CAB87857.1| putative protein [Arabidopsis thaliana] gi|26450191|dbj|BAC42214.1|
unknown protein [Arabidopsis thaliana]
gi|114050667|gb|ABI49483.1| At3g56030 [Arabidopsis
thaliana]
Length = 336
Score = 84.0 bits (206), Expect = 2e-14
Identities = 43/88 (48%), Positives = 59/88 (67%)
Frame = +1
Query: 1 ALLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSIL 180
A+LRRM EE + +Y+THAHVI +V G + +VEFV A G+D+ LD EN G L S L
Sbjct: 239 AILRRMEEEGLSVLYATHAHVIGEMVESGYYALSVEFVMAYAGKDKRLDEENLGSLASKL 298
Query: 181 VRKRRVVEAKIVFDEMDERELVVGEKLR 264
++++R EAK+V EM R L +G+ LR
Sbjct: 299 IKRKRFKEAKMVLKEMSVRGLRMGDALR 326
>ref|XP_002272959.2| PREDICTED: uncharacterized protein LOC100251820 [Vitis vinifera]
Length = 613
Score = 84.0 bits (206), Expect = 2e-14
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = +1
Query: 4 LLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSILV 183
+LRRM ++ VP +YSTHAHVI GL+ LG + +AVEFV GG+D++LD E+FG LGS L+
Sbjct: 232 VLRRMEDDGVPILYSTHAHVINGLLKLGYYAQAVEFVMICGGKDKKLDEESFGILGSRLI 291
Query: 184 RKRRVVEAKIVFD 222
+R EAK+ D
Sbjct: 292 NLKRFEEAKLGAD 304
>ref|NP_191162.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546756|sp|Q9LY43.2|PP283_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g56030 gi|332645947|gb|AEE79468.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 351
Score = 84.0 bits (206), Expect = 2e-14
Identities = 43/88 (48%), Positives = 59/88 (67%)
Frame = +1
Query: 1 ALLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSIL 180
A+LRRM EE + +Y+THAHVI +V G + +VEFV A G+D+ LD EN G L S L
Sbjct: 254 AILRRMEEEGLSVLYATHAHVIGEMVESGYYALSVEFVMAYAGKDKRLDEENLGSLASKL 313
Query: 181 VRKRRVVEAKIVFDEMDERELVVGEKLR 264
++++R EAK+V EM R L +G+ LR
Sbjct: 314 IKRKRFKEAKMVLKEMSVRGLRMGDALR 341
>ref|XP_007219888.1| hypothetical protein PRUPE_ppb013270mg, partial [Prunus persica]
gi|462416350|gb|EMJ21087.1| hypothetical protein
PRUPE_ppb013270mg, partial [Prunus persica]
Length = 199
Score = 82.4 bits (202), Expect = 6e-14
Identities = 41/90 (45%), Positives = 60/90 (66%)
Frame = +1
Query: 4 LLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSILV 183
LLRRM ++ VP STH ++I L+ + +AV+FVR+ GRD L+++NFG LG L+
Sbjct: 107 LLRRMVDDGVPMQLSTHVYMIDSLLNASFYDQAVKFVRSFSGRDTWLNKKNFGSLGYRLI 166
Query: 184 RKRRVVEAKIVFDEMDERELVVGEKLRRDY 273
+ +R +AK+V DEM R L +GEKL+ Y
Sbjct: 167 KLKRFDKAKLVLDEMKSRGLDMGEKLKEKY 196
>ref|XP_004515109.1| PREDICTED: pentatricopeptide repeat-containing protein At2g40240,
mitochondrial-like isoform X1 [Cicer arietinum]
gi|502171829|ref|XP_004515110.1| PREDICTED:
pentatricopeptide repeat-containing protein At2g40240,
mitochondrial-like isoform X2 [Cicer arietinum]
gi|502171834|ref|XP_004515111.1| PREDICTED:
pentatricopeptide repeat-containing protein At2g40240,
mitochondrial-like isoform X3 [Cicer arietinum]
Length = 334
Score = 81.3 bits (199), Expect = 1e-13
Identities = 42/90 (46%), Positives = 61/90 (67%)
Frame = +1
Query: 4 LLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSILV 183
++RRM ++ VP +YSTH +VI+GL+ + EA+++VR G+D+ LD E FG LG+ LV
Sbjct: 230 VVRRMVDDGVPMLYSTHMYVIEGLLKMNCCEEAMKYVRLFSGKDKALDCELFGCLGNKLV 289
Query: 184 RKRRVVEAKIVFDEMDERELVVGEKLRRDY 273
RV EA V DEM++R L +G KL+ Y
Sbjct: 290 GLNRVKEAMFVLDEMEKRGLSMGYKLKNFY 319
>emb|CBI25450.3| unnamed protein product [Vitis vinifera]
Length = 527
Score = 80.9 bits (198), Expect = 2e-13
Identities = 37/67 (55%), Positives = 51/67 (76%)
Frame = +1
Query: 4 LLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSILV 183
+LRRM ++ VP +YSTHAHVI GL+ LG + +AVEFV GG+D++LD E+FG LGS L+
Sbjct: 232 VLRRMEDDGVPILYSTHAHVINGLLKLGYYAQAVEFVMICGGKDKKLDEESFGILGSRLI 291
Query: 184 RKRRVVE 204
+R +E
Sbjct: 292 NLKRTME 298
>ref|XP_006294563.1| hypothetical protein CARUB_v10023599mg [Capsella rubella]
gi|482563271|gb|EOA27461.1| hypothetical protein
CARUB_v10023599mg [Capsella rubella]
Length = 331
Score = 80.5 bits (197), Expect = 2e-13
Identities = 45/93 (48%), Positives = 60/93 (64%)
Frame = +1
Query: 1 ALLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSIL 180
A+LRRM EE V +YSTHAHVI GLV G + +EFV A G+D LD ++FG L L
Sbjct: 231 AMLRRMEEEGVTVLYSTHAHVIAGLVEGGYYALGLEFVIANAGKDLRLDAKSFGCLAGKL 290
Query: 181 VRKRRVVEAKIVFDEMDERELVVGEKLRRDYMS 279
++++R EAK V EM R L + ++LR+ Y S
Sbjct: 291 MKRKRFEEAKTVLKEMVMRGLRMSDELRQFYES 323
>ref|XP_002876347.1| hypothetical protein ARALYDRAFT_486042 [Arabidopsis lyrata subsp.
lyrata] gi|297322185|gb|EFH52606.1| hypothetical protein
ARALYDRAFT_486042 [Arabidopsis lyrata subsp. lyrata]
Length = 334
Score = 80.1 bits (196), Expect = 3e-13
Identities = 41/87 (47%), Positives = 58/87 (66%)
Frame = +1
Query: 4 LLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSILV 183
+LRRM EE + +Y+THA+VI L+ G + +VEFV A G+D+ LD EN G L S L+
Sbjct: 238 ILRRMEEEGLSVLYATHAYVIGELLESGYYALSVEFVMAYAGKDKRLDEENLGSLASKLI 297
Query: 184 RKRRVVEAKIVFDEMDERELVVGEKLR 264
+++R EAK+V EM R L +G+ LR
Sbjct: 298 KRKRFKEAKLVLKEMSVRGLRMGDALR 324
>ref|XP_004308947.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56030-like [Fragaria vesca subsp. vesca]
Length = 331
Score = 77.8 bits (190), Expect = 1e-12
Identities = 43/92 (46%), Positives = 60/92 (65%)
Frame = +1
Query: 4 LLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSILV 183
LLRRMA++ VP + STH +V+ L+ G + +AV+FVR G+D LD E FG L L+
Sbjct: 234 LLRRMADDGVPVLLSTHVYVVNSLLSRGFYEQAVKFVRGFSGKDTWLDTEAFGRLAVKLI 293
Query: 184 RKRRVVEAKIVFDEMDERELVVGEKLRRDYMS 279
+ R EAK V DEM +R LV+ ++L +DY S
Sbjct: 294 KLERFGEAKEVLDEMRKRGLVIVDQL-KDYES 324
>gb|EYU43433.1| hypothetical protein MIMGU_mgv1a021376mg [Mimulus guttatus]
Length = 322
Score = 75.9 bits (185), Expect = 5e-12
Identities = 36/88 (40%), Positives = 58/88 (65%)
Frame = +1
Query: 1 ALLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSIL 180
A++RRM ++ V A++STH H++K +VG G + AV++VR G D +LD ENFG+L L
Sbjct: 222 AVMRRMVDDGVVALFSTHGHILKEMVGCGYYAAAVDYVRMYAGGDEKLDAENFGYLARRL 281
Query: 181 VRKRRVVEAKIVFDEMDERELVVGEKLR 264
+R+ EA V EM++R + + + L+
Sbjct: 282 KYVKRIEEAGSVVVEMEKRGIQIDDGLK 309
>ref|XP_007008912.1| Tetratricopeptide repeat-like superfamily protein, putative
[Theobroma cacao] gi|508725825|gb|EOY17722.1|
Tetratricopeptide repeat-like superfamily protein,
putative [Theobroma cacao]
Length = 361
Score = 73.6 bits (179), Expect = 3e-11
Identities = 41/90 (45%), Positives = 54/90 (60%)
Frame = +1
Query: 4 LLRRMAEERVPAMYSTHAHVIKGLVGLGGFGEAVEFVRAVGGRDRELDRENFGFLGSILV 183
LLR M + M+STH HVI G++ LG + AV FV A GRD +LD+E+FG L + L+
Sbjct: 259 LLRSMVGDGFHVMHSTHTHVINGMLRLGYWDPAVRFVMACRGRDEKLDQESFGVLANKLI 318
Query: 184 RKRRVVEAKIVFDEMDERELVVGEKLRRDY 273
RR EA +V EM + L +G KL Y
Sbjct: 319 GLRRRDEAMLVLSEMRKMGLTMGRKLTDFY 348