BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00056524
         (265 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHE41633.1| RNA polymerase beta subunit protein (chloroplast)...   176   2e-42
gb|ADD31205.1| RNA polymerase beta subunit protein [Liquidambar ...   176   2e-42
ref|YP_008592631.1| RNA polymerase beta subunit (chloroplast) [B...   173   3e-41
ref|YP_008963683.1| RNA polymerase beta subunit (chloroplast) [L...   172   6e-41
ref|YP_002836082.1| RNA polymerase beta subunit [Megaleranthis s...   171   8e-41
ref|YP_740642.1| RNA polymerase beta subunit [Nandina domestica]...   171   8e-41
ref|YP_004563859.1| RNA polymerase beta subunit [Nelumbo lutea] ...   171   1e-40
ref|YP_004564095.1| RNA polymerase beta subunit [Nelumbo nucifer...   171   1e-40
ref|YP_740557.1| RNA polymerase beta subunit [Platanus occidenta...   171   1e-40
gb|AHE41629.1| RNA polymerase beta subunit protein, partial (chl...   170   2e-40
ref|YP_001123022.1| RNA polymerase beta subunit [Aethionema gran...   170   2e-40
gb|AHE41627.1| RNA polymerase beta subunit protein, partial (chl...   169   3e-40
gb|AHE41617.1| RNA polymerase beta subunit protein (chloroplast)...   169   3e-40
ref|YP_008081357.1| RNA polymerase beta subunit (chloroplast) [T...   169   5e-40
ref|YP_005090170.1| rpoB gene product (chloroplast) [Ricinus com...   169   5e-40
ref|YP_004327649.1| RNA polymerase beta subunit [Hevea brasilien...   169   5e-40
ref|YP_008081449.1| RNA polymerase beta subunit (chloroplast) [T...   169   5e-40
gb|ADD31209.1| RNA polymerase beta subunit protein [Staphylea co...   169   5e-40
ref|YP_001718429.1| RNA polymerase beta subunit [Manihot esculen...   169   5e-40
gb|ADD31188.1| RNA polymerase beta subunit protein [Dillenia ind...   168   6e-40

>gb|AHE41633.1| RNA polymerase beta subunit protein (chloroplast) [Paeonia obovata]
          Length = 1070

 Score =  176 bits (447), Expect = 2e-42
 Identities = 85/87 (97%), Positives = 87/87 (100%)
 Frame = -3

Query: 263 FEDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 84
           FEDAVLISECL+YGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLD+NGIV
Sbjct: 667 FEDAVLISECLVYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDKNGIV 726

Query: 83  MLGSWVETGDILVGKLTPQMAKESSYA 3
           MLGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 727 MLGSWVETGDILVGKLTPQMAKESSYA 753


>gb|ADD31205.1| RNA polymerase beta subunit protein [Liquidambar styraciflua]
          Length = 1070

 Score =  176 bits (447), Expect = 2e-42
 Identities = 85/87 (97%), Positives = 87/87 (100%)
 Frame = -3

Query: 263 FEDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 84
           FEDAVLISECL+YGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLD+NGIV
Sbjct: 667 FEDAVLISECLVYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDKNGIV 726

Query: 83  MLGSWVETGDILVGKLTPQMAKESSYA 3
           MLGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 727 MLGSWVETGDILVGKLTPQMAKESSYA 753


>ref|YP_008592631.1| RNA polymerase beta subunit (chloroplast) [Berberis bealei]
           gi|536462672|gb|AGU37037.1| RNA polymerase beta subunit
           (chloroplast) [Berberis bealei]
          Length = 1070

 Score =  173 bits (438), Expect = 3e-41
 Identities = 85/87 (97%), Positives = 86/87 (98%)
 Frame = -3

Query: 263 FEDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 84
           FEDAVLISE L+YGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV
Sbjct: 667 FEDAVLISERLVYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 726

Query: 83  MLGSWVETGDILVGKLTPQMAKESSYA 3
           MLGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 727 MLGSWVETGDILVGKLTPQMAKESSYA 753


>ref|YP_008963683.1| RNA polymerase beta subunit (chloroplast) [Liquidambar formosana]
           gi|491650363|gb|AGL13423.1| RNA polymerase beta subunit
           (chloroplast) [Liquidambar formosana]
          Length = 1070

 Score =  172 bits (435), Expect = 6e-41
 Identities = 84/87 (96%), Positives = 86/87 (98%)
 Frame = -3

Query: 263 FEDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 84
           FEDAVLISE L+YGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLD+NGIV
Sbjct: 667 FEDAVLISERLVYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDKNGIV 726

Query: 83  MLGSWVETGDILVGKLTPQMAKESSYA 3
           MLGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 727 MLGSWVETGDILVGKLTPQMAKESSYA 753


>ref|YP_002836082.1| RNA polymerase beta subunit [Megaleranthis saniculifolia]
           gi|226933874|gb|ACO92007.1| RNA polymerase beta subunit
           [Megaleranthis saniculifolia]
          Length = 1071

 Score =  171 bits (434), Expect = 8e-41
 Identities = 84/87 (96%), Positives = 86/87 (98%)
 Frame = -3

Query: 263 FEDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 84
           FEDAVLISE L+YGDIYTSFHIRKYEI+THVTSQGPERITNEIPHLEAHLLRNLDRNGIV
Sbjct: 668 FEDAVLISERLVYGDIYTSFHIRKYEIKTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 727

Query: 83  MLGSWVETGDILVGKLTPQMAKESSYA 3
           MLGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 728 MLGSWVETGDILVGKLTPQMAKESSYA 754


>ref|YP_740642.1| RNA polymerase beta subunit [Nandina domestica]
           gi|122165969|sp|Q09FW9.1|RPOB_NANDO RecName:
           Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|114054462|gb|ABI49855.1| RNA polymerase beta subunit
           [Nandina domestica]
          Length = 1070

 Score =  171 bits (434), Expect = 8e-41
 Identities = 84/87 (96%), Positives = 86/87 (98%)
 Frame = -3

Query: 263 FEDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 84
           FEDAVLISE L+YGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV
Sbjct: 667 FEDAVLISERLVYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 726

Query: 83  MLGSWVETGDILVGKLTPQMAKESSYA 3
           MLGSWVETGDILVGKLTPQ+AKESSYA
Sbjct: 727 MLGSWVETGDILVGKLTPQVAKESSYA 753


>ref|YP_004563859.1| RNA polymerase beta subunit [Nelumbo lutea]
           gi|224474126|gb|ACN49315.1| RNA polymerase beta subunit
           [Nelumbo lutea] gi|383286884|gb|AFH01533.1| RNA
           polymerase beta subunit (chloroplast) [Nelumbo lutea]
          Length = 1070

 Score =  171 bits (432), Expect = 1e-40
 Identities = 84/86 (97%), Positives = 85/86 (98%)
 Frame = -3

Query: 260 EDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM 81
           EDAVLISE L+YGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM
Sbjct: 668 EDAVLISERLVYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM 727

Query: 80  LGSWVETGDILVGKLTPQMAKESSYA 3
           LGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 728 LGSWVETGDILVGKLTPQMAKESSYA 753


>ref|YP_004564095.1| RNA polymerase beta subunit [Nelumbo nucifera]
           gi|224474214|gb|ACN49400.1| RNA polymerase beta subunit
           [Nelumbo nucifera] gi|290489618|gb|ADD31193.1| RNA
           polymerase beta subunit protein [Nelumbo nucifera]
           gi|383286789|gb|AFH01439.1| RNA polymerase beta subunit
           (chloroplast) [Nelumbo nucifera]
           gi|519666904|gb|AGO98516.1| RNA polymerase beta subunit
           (chloroplast) [Nelumbo nucifera]
          Length = 1070

 Score =  171 bits (432), Expect = 1e-40
 Identities = 84/86 (97%), Positives = 85/86 (98%)
 Frame = -3

Query: 260 EDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM 81
           EDAVLISE L+YGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM
Sbjct: 668 EDAVLISERLVYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM 727

Query: 80  LGSWVETGDILVGKLTPQMAKESSYA 3
           LGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 728 LGSWVETGDILVGKLTPQMAKESSYA 753


>ref|YP_740557.1| RNA polymerase beta subunit [Platanus occidentalis]
           gi|122166043|sp|Q09G54.1|RPOB_PLAOC RecName:
           Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|114054376|gb|ABI49770.1| RNA polymerase beta subunit
           [Platanus occidentalis]
          Length = 1070

 Score =  171 bits (432), Expect = 1e-40
 Identities = 84/86 (97%), Positives = 85/86 (98%)
 Frame = -3

Query: 260 EDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM 81
           EDAVLISE L+YGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM
Sbjct: 668 EDAVLISERLVYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM 727

Query: 80  LGSWVETGDILVGKLTPQMAKESSYA 3
           LGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 728 LGSWVETGDILVGKLTPQMAKESSYA 753


>gb|AHE41629.1| RNA polymerase beta subunit protein, partial (chloroplast)
           [Philadelphus coronarius]
          Length = 794

 Score =  170 bits (430), Expect = 2e-40
 Identities = 82/87 (94%), Positives = 85/87 (97%)
 Frame = -3

Query: 263 FEDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 84
           FEDAVLISE L+YGDIYTSFHIRKYEIQTHVTSQGPER+TNEIPHLEAHLLRNLD+NGIV
Sbjct: 651 FEDAVLISERLVYGDIYTSFHIRKYEIQTHVTSQGPERVTNEIPHLEAHLLRNLDKNGIV 710

Query: 83  MLGSWVETGDILVGKLTPQMAKESSYA 3
           MLGSWVETGDILVGKLTPQM KESSYA
Sbjct: 711 MLGSWVETGDILVGKLTPQMVKESSYA 737


>ref|YP_001123022.1| RNA polymerase beta subunit [Aethionema grandiflorum]
           gi|158513606|sp|A4QJJ1.1|RPOB_AETGR RecName:
           Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|134286218|dbj|BAF49846.1| RNA polymerase beta subunit
           [Aethionema grandiflorum]
          Length = 1073

 Score =  170 bits (430), Expect = 2e-40
 Identities = 81/87 (93%), Positives = 85/87 (97%)
 Frame = -3

Query: 263 FEDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 84
           FEDAVLISECL+YGDIYTSFHIRKYEIQTHVT+QGPERIT EIPHLE HLLRNLD+NGIV
Sbjct: 670 FEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGHLLRNLDKNGIV 729

Query: 83  MLGSWVETGDILVGKLTPQMAKESSYA 3
           MLGSWVETGDILVGKLTPQ+AKESSYA
Sbjct: 730 MLGSWVETGDILVGKLTPQVAKESSYA 756


>gb|AHE41627.1| RNA polymerase beta subunit protein, partial (chloroplast)
           [Mytilaria laosensis]
          Length = 793

 Score =  169 bits (429), Expect = 3e-40
 Identities = 83/86 (96%), Positives = 85/86 (98%)
 Frame = -3

Query: 260 EDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM 81
           EDAVLISE L+YGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLD+NGIVM
Sbjct: 651 EDAVLISERLVYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDKNGIVM 710

Query: 80  LGSWVETGDILVGKLTPQMAKESSYA 3
           LGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 711 LGSWVETGDILVGKLTPQMAKESSYA 736


>gb|AHE41617.1| RNA polymerase beta subunit protein (chloroplast) [Hamamelis
           mollis]
          Length = 1070

 Score =  169 bits (429), Expect = 3e-40
 Identities = 83/86 (96%), Positives = 85/86 (98%)
 Frame = -3

Query: 260 EDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM 81
           EDAVLISE L+YGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLD+NGIVM
Sbjct: 668 EDAVLISERLVYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDKNGIVM 727

Query: 80  LGSWVETGDILVGKLTPQMAKESSYA 3
           LGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 728 LGSWVETGDILVGKLTPQMAKESSYA 753


>ref|YP_008081357.1| RNA polymerase beta subunit (chloroplast) [Tetracentron sinense]
           gi|479279195|gb|AGJ72049.1| RNA polymerase beta subunit
           (chloroplast) [Tetracentron sinense]
          Length = 1070

 Score =  169 bits (427), Expect = 5e-40
 Identities = 83/86 (96%), Positives = 85/86 (98%)
 Frame = -3

Query: 260 EDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM 81
           EDAVLISE L+YGDIYTSFHIRKYEIQTHVTSQGPERIT+EIPHLEAHLLRNLDRNGIVM
Sbjct: 668 EDAVLISERLVYGDIYTSFHIRKYEIQTHVTSQGPERITSEIPHLEAHLLRNLDRNGIVM 727

Query: 80  LGSWVETGDILVGKLTPQMAKESSYA 3
           LGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 728 LGSWVETGDILVGKLTPQMAKESSYA 753


>ref|YP_005090170.1| rpoB gene product (chloroplast) [Ricinus communis]
           gi|339516157|gb|AEJ82547.1| RNA polymerase beta subunit
           [Ricinus communis]
          Length = 1070

 Score =  169 bits (427), Expect = 5e-40
 Identities = 83/87 (95%), Positives = 85/87 (97%)
 Frame = -3

Query: 263 FEDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 84
           FEDAVLISE L+Y DIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLD+NGIV
Sbjct: 667 FEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDKNGIV 726

Query: 83  MLGSWVETGDILVGKLTPQMAKESSYA 3
           MLGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 727 MLGSWVETGDILVGKLTPQMAKESSYA 753


>ref|YP_004327649.1| RNA polymerase beta subunit [Hevea brasiliensis]
           gi|308523494|gb|ADO33544.1| RNA polymerase beta subunit
           [Hevea brasiliensis]
          Length = 1070

 Score =  169 bits (427), Expect = 5e-40
 Identities = 83/87 (95%), Positives = 85/87 (97%)
 Frame = -3

Query: 263 FEDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 84
           FEDAVLISE L+Y DIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLD+NGIV
Sbjct: 667 FEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDKNGIV 726

Query: 83  MLGSWVETGDILVGKLTPQMAKESSYA 3
           MLGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 727 MLGSWVETGDILVGKLTPQMAKESSYA 753


>ref|YP_008081449.1| RNA polymerase beta subunit (chloroplast) [Trochodendron
           aralioides] gi|290489652|gb|ADD31210.1| RNA polymerase
           beta subunit protein [Trochodendron aralioides]
           gi|479279288|gb|AGJ72141.1| RNA polymerase beta subunit
           (chloroplast) [Trochodendron aralioides]
          Length = 1070

 Score =  169 bits (427), Expect = 5e-40
 Identities = 83/86 (96%), Positives = 85/86 (98%)
 Frame = -3

Query: 260 EDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM 81
           EDAVLISE L+YGDIYTSFHIRKYEIQTHVTSQGPERIT+EIPHLEAHLLRNLDRNGIVM
Sbjct: 668 EDAVLISERLVYGDIYTSFHIRKYEIQTHVTSQGPERITSEIPHLEAHLLRNLDRNGIVM 727

Query: 80  LGSWVETGDILVGKLTPQMAKESSYA 3
           LGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 728 LGSWVETGDILVGKLTPQMAKESSYA 753


>gb|ADD31209.1| RNA polymerase beta subunit protein [Staphylea colchica]
          Length = 1070

 Score =  169 bits (427), Expect = 5e-40
 Identities = 82/87 (94%), Positives = 86/87 (98%)
 Frame = -3

Query: 263 FEDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 84
           FEDAVLISE L+YGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLD+NGIV
Sbjct: 667 FEDAVLISERLVYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDKNGIV 726

Query: 83  MLGSWVETGDILVGKLTPQMAKESSYA 3
           MLGSWVETGDILVGKLTP++AKESSYA
Sbjct: 727 MLGSWVETGDILVGKLTPRVAKESSYA 753


>ref|YP_001718429.1| RNA polymerase beta subunit [Manihot esculenta]
           gi|157695877|gb|ABV66146.1| RNA polymerase beta subunit
           [Manihot esculenta]
          Length = 1070

 Score =  169 bits (427), Expect = 5e-40
 Identities = 83/87 (95%), Positives = 85/87 (97%)
 Frame = -3

Query: 263 FEDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIV 84
           FEDAVLISE L+Y DIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLD+NGIV
Sbjct: 667 FEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDKNGIV 726

Query: 83  MLGSWVETGDILVGKLTPQMAKESSYA 3
           MLGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 727 MLGSWVETGDILVGKLTPQMAKESSYA 753


>gb|ADD31188.1| RNA polymerase beta subunit protein [Dillenia indica]
          Length = 1072

 Score =  168 bits (426), Expect = 6e-40
 Identities = 81/86 (94%), Positives = 85/86 (98%)
 Frame = -3

Query: 260 EDAVLISECLLYGDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDRNGIVM 81
           EDAVLISE ++YGD+YTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLD+NGIVM
Sbjct: 670 EDAVLISERMVYGDVYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDKNGIVM 729

Query: 80  LGSWVETGDILVGKLTPQMAKESSYA 3
           LGSWVETGDILVGKLTPQMAKESSYA
Sbjct: 730 LGSWVETGDILVGKLTPQMAKESSYA 755