BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00056257
         (780 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   102   2e-24
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    95   3e-22
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    96   3e-22
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    90   3e-21
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                95   4e-21
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 89   5e-21
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    96   5e-21
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   103   8e-21
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    91   2e-20
emb|CAB72467.1| putative protein [Arabidopsis thaliana]                92   4e-20
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...    92   5e-20
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    90   3e-19
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...    85   3e-18
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            81   3e-18
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...    82   2e-17
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...    95   2e-17
emb|CAN82456.1| hypothetical protein VITISV_010028 [Vitis vinifera]    60   8e-17
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta...    82   1e-16
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              92   3e-16
gb|ABW81094.1| RT6non-ltr [Cleome spinosa]                             78   1e-15

>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  102 bits (254), Expect(2) = 2e-24
 Identities = 63/181 (34%), Positives = 90/181 (49%), Gaps = 7/181 (3%)
 Frame = +3

Query: 102 IFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKS 281
           ++ AG++    Q             PV+YLG PL++ RLT     PL++ +  R+ +W S
Sbjct: 464 LYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTS 523

Query: 282 RLLSWAGRTVLVQVVL-------QNLCPLDGSSCNSF*DIQEARIYYEKVFGCKVVEEKI 440
           R LS+AGR  L+  VL        N   L     N    I  A ++     G ++  +K 
Sbjct: 524 RYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWS----GPELNPKKA 579

Query: 441 LFSWVEGHSSSKRRRGLKIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW 620
             SW E     K+  GL +++L++ NK   LKLIWRL + QDSLWVKW      KKES W
Sbjct: 580 KVSWDE-ICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFW 638

Query: 621 T 623
           +
Sbjct: 639 S 639



 Score = 37.4 bits (85), Expect(2) = 2e-24
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +2

Query: 659 KLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
           +L K R +A S  K  V NG +T FW DNW E+G
Sbjct: 653 RLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKG 686


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 94.7 bits (234), Expect(2) = 3e-22
 Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 6/179 (3%)
 Frame = +3

Query: 102 IFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKS 281
           ++FAGL+    Q             PV+YLG PL++ +L+    +PL+E ++ ++  W +
Sbjct: 125 VYFAGLSHTSPQEVMAHFPFAVGTLPVRYLGLPLVTKQLSSTDYLPLIEHIKKKIGSWSA 184

Query: 282 RLLSWAGRTVLVQVVLQNLCPLDGSSCNSF*DIQEARIYYEKVF------GCKVVEEKIL 443
           R LS+AGR  L+  VL ++C        +F   +E     +K+       G  +   K  
Sbjct: 185 RFLSYAGRLNLISSVLWSICNF---WMGAFRLPRECIREIDKMCSAYLWSGGDLNTSKAK 241

Query: 444 FSWVEGHSSSKRRRGLKIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW 620
            +W +     K   GL +R+LK+ N    LKLIWR+ ++ DSLWVKWI+    K+ S W
Sbjct: 242 IAWTDV-CKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFW 299



 Score = 37.7 bits (86), Expect(2) = 3e-22
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 656 EKLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
           +K+ K R  A+   K  V NG+ T FW DNW + G
Sbjct: 313 KKVLKFRDAAIQLCKAEVNNGAHTFFWYDNWSDMG 347


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 95.9 bits (237), Expect(2) = 3e-22
 Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 7/186 (3%)
 Frame = +3

Query: 102  IFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKS 281
            ++ AGL+                  PV+YLG PLI+ RL+   C+PL+E +  R+  W S
Sbjct: 743  VYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTS 802

Query: 282  RLLSWAGRTVLVQVVLQNLCP-------LDGSSCNSF*DIQEARIYYEKVFGCKVVEEKI 440
            R LS+AGR  L+  VL ++C        L          +  A ++     G ++   K 
Sbjct: 803  RFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWS----GTEMNSNKA 858

Query: 441  LFSWVEGHSSSKRRRGLKIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW 620
              SW       K   GL +R+LK+ N    LKL+W++ ++ +SLWVKW+ +   +  S W
Sbjct: 859  KISW-HMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFW 917

Query: 621  TANSTM 638
                T+
Sbjct: 918  EVKQTV 923



 Score = 36.2 bits (82), Expect(2) = 3e-22
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 656  EKLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
            +KL K R +A +  K  V NG  T FW DNW + G
Sbjct: 931  KKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLG 965


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 89.7 bits (221), Expect(2) = 3e-21
 Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 7/183 (3%)
 Frame = +3

Query: 102  IFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKS 281
            I+ AG++                  PV+YLG PL++ ++T     PL+E ++ ++  W +
Sbjct: 1040 IYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTA 1099

Query: 282  RLLSWAGRTVLVQVVLQNLCP-------LDGSSCNSF*DIQEARIYYEKVFGCKVVEEKI 440
            R LS+AGR  L+  V+ ++         L          +  A ++   V   K  + KI
Sbjct: 1100 RSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPK--KAKI 1157

Query: 441  LFSWVEGHSSSKRRRGLKIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW 620
             +S +      K+  GL I++L + NK   LKLIWRL + Q SLWV WI+    +K + W
Sbjct: 1158 AWSSI---CQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFW 1214

Query: 621  TAN 629
            +AN
Sbjct: 1215 SAN 1217



 Score = 38.9 bits (89), Expect(2) = 3e-21
 Identities = 19/35 (54%), Positives = 21/35 (60%)
 Frame = +2

Query: 656  EKLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
            +KL K R LA S  K  V NGSST FW D+W   G
Sbjct: 1228 KKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHLG 1262


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 95.1 bits (235), Expect(2) = 4e-21
 Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 14/203 (6%)
 Frame = +3

Query: 57  RRSNVSLSFHFNHGGIFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCI 236
           +RS + +S       ++ AG++P  +Q             PV+YLG PL++ RLT     
Sbjct: 377 KRSGLRISLE--KSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYS 434

Query: 237 PLVEMMEARLQLWKSRLLSWAGRTVLVQVVLQNLCPLDGSS--------------CNSF* 374
           PL+E ++ R+  W  R  S+AGR  L++ VL ++C    ++              C+SF 
Sbjct: 435 PLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSF- 493

Query: 375 DIQEARIYYEKVFGCKVVEEKILFSWVEGHSSSKRRRGLKIRTLKDMNKAGILKLIWRLT 554
                        G ++   K   SW +     K   GL +R LK+ N    LKL+WR+ 
Sbjct: 494 ----------LWSGSEMSSHKAKISW-DIVCKPKAEGGLGLRNLKEANDVSCLKLVWRII 542

Query: 555 ANQDSLWVKWIYERYFKKESLWT 623
           +N +SLW KW+ E   +K+S+W+
Sbjct: 543 SNSNSLWTKWVAEYLIRKKSIWS 565



 Score = 33.5 bits (75), Expect(2) = 4e-21
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 659 KLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
           K+ K+R +A S  +  V NG S  FW D+W   G
Sbjct: 579 KILKIRDVAKSFSRVEVGNGESASFWYDHWSAHG 612


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 89.0 bits (219), Expect(2) = 5e-21
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 15/191 (7%)
 Frame = +3

Query: 102 IFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKS 281
           ++ AG++     +            PV+YLG PL++ ++T     PL++ + +++  W +
Sbjct: 316 LYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTA 375

Query: 282 RLLSWAGRTVLVQVVLQNLCPLDGSSCNSF*DIQEARIYYEKVFGCKVVEEKIL--FSWV 455
           R LS+AGR  L+  V+ +L     S+             Y    GC    EK+   F W 
Sbjct: 376 RSLSYAGRLALINSVIVSLSNFWMSA-------------YRLPAGCIKEIEKLCSAFLWS 422

Query: 456 EGHSSSKRRR-------------GLKIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYER 596
               + K+ +             GL I++L + NK   LKLIWRL + Q SLWV W++  
Sbjct: 423 GPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTY 482

Query: 597 YFKKESLWTAN 629
             +K S W+AN
Sbjct: 483 IIRKGSFWSAN 493



 Score = 39.3 bits (90), Expect(2) = 5e-21
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +2

Query: 656 EKLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
           +KL K R +A S  K  + +GSST FW DNW + G
Sbjct: 504 KKLLKYRDVAKSMCKVEIKSGSSTSFWYDNWSQLG 538


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 95.9 bits (237), Expect(2) = 5e-21
 Identities = 62/170 (36%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
 Frame = +3

Query: 177 PVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKSRLLSWAGRTVLVQVVL-------QN 335
           PV+YLG PL++ RLT +   PL E +  R+  W SR LS+AGR  L+  VL        +
Sbjct: 173 PVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMS 232

Query: 336 LCPLDGSSCNSF*DIQEARIYYEKVFGCKVVEEKILFSWVEGHSSSKRRRGLKIRTLKDM 515
              L  +       I  A ++     G ++   K   SW +     K+  GL +R+L + 
Sbjct: 233 AFRLPSACLKEINSICSAFLWS----GPELHRRKAKVSW-DDICKPKQEGGLGLRSLTEA 287

Query: 516 NKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW--TANSTMVFLDYKK 659
           N   +LKLIWR+T+N DSLWVKW      K+ES W  T NS++    +KK
Sbjct: 288 NVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKK 337



 Score = 32.3 bits (72), Expect(2) = 5e-21
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 656 EKLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
           +K+ K R  A    +  V NG+ T FW DNW   G
Sbjct: 336 KKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMG 370


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  103 bits (256), Expect(2) = 8e-21
 Identities = 64/186 (34%), Positives = 98/186 (52%), Gaps = 12/186 (6%)
 Frame = +3

Query: 102  IFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKS 281
            IF AG++P  +              PVKYLG PL++ R+T    +PLVE + AR+  W +
Sbjct: 890  IFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTN 949

Query: 282  RLLSWAGRTVLVQVVLQNLCPLDGS------SCNSF*DIQEARIYYEKVF------GCKV 425
            R LS+AGR  L++ VL ++     S      +C     +QE     EK+F      G  +
Sbjct: 950  RFLSFAGRLQLIKSVLSSITNFWLSVFRLPKAC-----LQE----IEKMFSAFLWSGPDL 1000

Query: 426  VEEKILFSWVEGHSSSKRRRGLKIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFK 605
              +K   +W E     K   GL ++ LK+ N+  +LKLIWR+ + +DSLWVKW+ +   +
Sbjct: 1001 NTKKAKIAWSE-VCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIR 1059

Query: 606  KESLWT 623
            KE+ W+
Sbjct: 1060 KETFWS 1065



 Score = 24.3 bits (51), Expect(2) = 8e-21
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 650  LQEKLCKLRSLALSSIKTTVVNGSSTLFWLDNW 748
            L  K+ K R  A    +  V +G+ T FW D+W
Sbjct: 1076 LWRKILKQRDKARLFHRMEVRSGTFTSFWHDHW 1108


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 90.5 bits (223), Expect(2) = 2e-20
 Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 15/166 (9%)
 Frame = +3

Query: 177  PVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKSRLLSWAGRTVLVQVVLQNLCPLDGS 356
            PV+YLGFPL++ ++T     PL++ + +++  W +R LS+AGR  L+  V+ +L     S
Sbjct: 910  PVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMS 969

Query: 357  SCNSF*DIQEARIYYEKVFGCKVVEEKIL--FSWVEGHSSSKRRR-------------GL 491
            +             Y    GC    EK+   F W     + K+ +             GL
Sbjct: 970  A-------------YRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGL 1016

Query: 492  KIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLWTAN 629
             I++L + NK   LKLIWRL + Q SLWV W++    +K S W+AN
Sbjct: 1017 GIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSAN 1062



 Score = 35.8 bits (81), Expect(2) = 2e-20
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 656  EKLCKLRSLALSSIKTTVVNGSSTLFWLDNWHE 754
            +KL   R +A S  K  + +GSST FW DNW +
Sbjct: 1073 KKLLNYRDVAKSMCKVEIKSGSSTSFWYDNWSQ 1105


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score = 92.0 bits (227), Expect(2) = 4e-20
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 10/183 (5%)
 Frame = +3

Query: 102 IFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKS 281
           IF AGL+                  P++YLG PL++ RL+     PL+E +  R+  W S
Sbjct: 296 IFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSS 355

Query: 282 RLLSWAGRTVLVQVVLQNLCPLDGSSCNSF*D-IQEARIYYEKV---------FGCKVVE 431
           R LS+AGR  L+  ++        SSCN +    Q  R   +++          G  +  
Sbjct: 356 RFLSFAGRFNLISSII-------WSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNLNS 408

Query: 432 EKILFSWVEGHSSSKRRRGLKIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFKKE 611
           +K   SW +     K   GL +R+LK+ N    LKL+WR+ ++ DSLWVKW+     K+E
Sbjct: 409 KKAKISWNQ-VCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKRE 467

Query: 612 SLW 620
             W
Sbjct: 468 IFW 470



 Score = 33.1 bits (74), Expect(2) = 4e-20
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 656 EKLCKLRSLALSSIKTTVVNGSSTLFWLDNW 748
           +K+ K R +A    K  V NG ST FW D+W
Sbjct: 484 KKILKYRGVAKRFCKAEVGNGESTSFWFDDW 514


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score = 92.4 bits (228), Expect(2) = 5e-20
 Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
 Frame = +3

Query: 177  PVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKSRLLSWAGRTVLVQVVL-------QN 335
            PV+YLG PL++ RLT +   PL E +  R+  W SR LS+AGR  L+  VL        +
Sbjct: 685  PVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMS 744

Query: 336  LCPLDGSSCNSF*DIQEARIYYEKVFGCKVVEEKILFSWVEGHSSSKRRRGLKIRTLKDM 515
               L  +       I  A ++     G ++   K   SW +      ++ GL +R+L + 
Sbjct: 745  AFRLPSACLKEINSICSAFLWS----GPELNRRKAKVSWDD--ICKPKQGGLGLRSLTEA 798

Query: 516  NKAGILKLIWRLTANQDSLWVKWIYERYFKKESLWT--ANSTMVFLDYKK 659
            N   +LKLIWR+T+N DSLWVKW      K+ES W+   NS++    +KK
Sbjct: 799  NVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLKPNSSLGSWMWKK 848



 Score = 32.3 bits (72), Expect(2) = 5e-20
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 656 EKLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
           +K+ K R  A    +  V NG+ T FW DNW   G
Sbjct: 847 KKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMG 881


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 90.1 bits (222), Expect(2) = 3e-19
 Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 6/183 (3%)
 Frame = +3

Query: 102 IFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKS 281
           I+FAG++    +             PV+YL  PL++ R T Q   PL+E ++ R+  W +
Sbjct: 261 IYFAGISKSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTSQDYSPLLEQIKRRIGTWTA 320

Query: 282 RLLSWAGRTVLVQVVLQNLCPLDGSSCNSF*DIQEARIYYEKV------FGCKVVEEKIL 443
           R LS+AGR  LV  VL ++C       ++F   +E     +K+       G ++   K  
Sbjct: 321 RFLSYAGRLNLVSSVLWSIC---NFWLSAFRLPRECVREIDKLCSAFLWSGPELSTNKAK 377

Query: 444 FSWVEGHSSSKRRRGLKIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLWT 623
            +W E     KR  GL ++++K+ N    LKLIWR+ +  DSLWV+WI     K+ + W+
Sbjct: 378 IAW-ETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWS 436

Query: 624 ANS 632
             S
Sbjct: 437 FRS 439



 Score = 32.0 bits (71), Expect(2) = 3e-19
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 656 EKLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
           +KL K R  A +  K  + NG +  FW D+W  +G
Sbjct: 448 KKLLKYRDTAKAFSKVDIRNGETASFWYDDWSSKG 482


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score = 84.7 bits (208), Expect(2) = 3e-18
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 5/178 (2%)
 Frame = +3

Query: 102 IFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKS 281
           ++ AGL+    Q             PV+YLG PL++ + +    +PL++ ++ ++  W +
Sbjct: 73  VYLAGLSHTTRQEVIDRFSFAVGTLPVRYLGLPLVTKQFSSTDYLPLIDHIKQKICSWSA 132

Query: 282 RLLSWAGRTVLVQVVLQNLCPLDGSSCNSF*D-IQE----ARIYYEKVFGCKVVEEKILF 446
           R LS+ GR  L+  +L ++C     +     D I+E       Y          + KI +
Sbjct: 133 RFLSYTGRLNLISSILWSICNFWMGAFRLPRDCIREIDKMCSAYLWSGGELNTSKAKIAW 192

Query: 447 SWVEGHSSSKRRRGLKIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW 620
           ++V      K   GL +R+LK+ N    LKLIWR+ ++ DSLWVKWI     KK   W
Sbjct: 193 AFV---CKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFW 247



 Score = 34.3 bits (77), Expect(2) = 3e-18
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 659 KLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
           K+ K R +A +  K  + NG+ T FW D+W + G
Sbjct: 262 KILKFRDIARTLCKVEINNGAQTSFWYDDWSDLG 295


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 80.9 bits (198), Expect(2) = 3e-18
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 9/170 (5%)
 Frame = +3

Query: 177 PVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKSRLLSWAGRTVLVQVVLQNLC----- 341
           PV+YLG PL++ ++T     PLVE +  R+  W +R LS+AGR  L+  V+ +L      
Sbjct: 24  PVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMS 83

Query: 342 --PLDGSSCNSF*DIQEARIYYEKVFGCKVVEEKILFSWVEGHSSSKRRRGLKIRTLKDM 515
              L  +       I  + ++     G ++  +K   +W +   + K   GL IR+LK+ 
Sbjct: 84  AFRLPSACIKEIDSICSSFLW----SGPELNTKKAKVAWSD-VCTPKDEGGLGIRSLKEA 138

Query: 516 NKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW--TANSTMVFLDYKK 659
           NK  +LKLIWR+ ++  SLWV+W+     +K S W  + N+T+    +KK
Sbjct: 139 NKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 187



 Score = 38.1 bits (87), Expect(2) = 3e-18
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +2

Query: 656 EKLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
           +K+ K R+LA   +K  + NGS+T FW DNW + G
Sbjct: 186 KKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIG 220


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score = 81.6 bits (200), Expect(2) = 2e-17
 Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
 Frame = +3

Query: 72   SLSFHFNHGGIFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEM 251
            SL  + +   IF AG++                  PV+YLG PLI+ +L +Q C PL++ 
Sbjct: 555  SLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDR 614

Query: 252  MEARLQLWKSRLLSWAGRTVLVQVVLQNLCPLDGSSCNSF*DIQEARIYYEKVFGCKVVE 431
            +E R++ W++++LS+AGR  L+Q VL ++     S            I  +KV   K +E
Sbjct: 615  IETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHL----------ILPKKVL--KDIE 662

Query: 432  EKI-LFSWVEGHSSS-------------KRRRGLKIRTLKDMNKAGILKLIWRLTANQDS 569
            +++  F W    S               K   GL I+ L   NKA ++  IW L ++  +
Sbjct: 663  KRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWNKALMISHIWNLVSSSSN 722

Query: 570  LWVKWIYERYFKKESLWTA 626
             W  W+     K  S W A
Sbjct: 723  FWTDWVKVYLLKGNSFWNA 741



 Score = 34.3 bits (77), Expect(2) = 2e-17
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 659 KLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
           KL K+R L  S     + +G +T  W DNWH  G
Sbjct: 753 KLLKIRELCCSFFVNIIGDGRATSLWFDNWHPLG 786


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score = 95.1 bits (235), Expect = 2e-17
 Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 7/183 (3%)
 Frame = +3

Query: 102  IFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKS 281
            I+F G++ E  +             P +YLG PL S +LT  QC PLVEM+  R Q W +
Sbjct: 728  IYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMA 787

Query: 282  RLLSWAGRTVLVQVVLQ-------NLCPLDGSSCNSF*DIQEARIYYEKVFGCKVVEEKI 440
            +LLS+AGR  L++ +L        ++ PL      +   +    ++  K    K    K 
Sbjct: 788  KLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETK----KA 843

Query: 441  LFSWVEGHSSSKRRRGLKIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW 620
              +W       K R G  +  +K  N+A +LKL+W +   +D LWV+WI+  Y K++ + 
Sbjct: 844  PVAWAT-IQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDIL 902

Query: 621  TAN 629
            T N
Sbjct: 903  TVN 905


>emb|CAN82456.1| hypothetical protein VITISV_010028 [Vitis vinifera]
          Length = 4128

 Score = 60.1 bits (144), Expect(3) = 8e-17
 Identities = 29/58 (50%), Positives = 41/58 (70%)
 Frame = +1

Query: 1    VLVNGTPAEFSNGSRGLRQGDPMSPYLFTLTMEVFSLQV*TLSKSSIFFH*VASLRVS 174
            +L+NGTP++F   +RGLRQGDP+SPYLF L ME  S Q+  LS   ++F  ++ L V+
Sbjct: 1331 ILINGTPSDFFRSTRGLRQGDPLSPYLFLLVMEADSGQLRYLSWVLLWFEAISGLXVN 1388



 Score = 51.6 bits (122), Expect(3) = 8e-17
 Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 8/156 (5%)
 Frame = +3

Query: 177  PVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKSRLLSWAGRTVLVQ-------VVLQN 335
            P  YLG PL +   + +    + E     L LWK + LS  GR  L++       + L +
Sbjct: 1418 PSSYLGLPLGAPFKSPRVWDVVEERFRKCLSLWKRQYLSKGGRLTLIKSTLSSLPIYLMS 1477

Query: 336  LCPLDGSSCNSF*DIQEARIYYEKVFGCKVVEEKI-LFSWVEGHSSSKRRRGLKIRTLKD 512
            L  +    C     IQ      + ++G   +E+K  L +W     +  R+ GL IR+L  
Sbjct: 1478 LFVIPRKVCARIEKIQR-----DFLWGGGALEKKPHLVNW-SAVCTDMRQGGLGIRSLVA 1531

Query: 513  MNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW 620
            +N+A + K  W+ +  ++SLW + I ++Y ++E  W
Sbjct: 1532 LNRALLGKWNWKFSIERNSLWKQVIIDKYGEEEGGW 1567



 Score = 21.9 bits (45), Expect(3) = 8e-17
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 647  GLQEKLCKLRSLALSSIKTTVVNGSSTLFWLDNWHE 754
            GL + + K   +  S  +  V NG    FW D W E
Sbjct: 1579 GLWKAIRKDWEIIRSRSRFIVGNGRKVKFWKDLWCE 1614



 Score = 57.0 bits (136), Expect = 7e-06
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
 Frame = +3

Query: 177  PVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKSRLLSWAGRTVLVQVVLQNLCP---- 344
            P  YLG PL +   +++    + E    RL LWK + LS  GR  L++  L +L      
Sbjct: 3156 PTSYLGLPLGAPYKSIRVWDAVEERFRKRLSLWKRQYLSKGGRLTLLKSTLSSLPTYFLS 3215

Query: 345  ---LDGSSCNSF*DIQEARIYYEKVFGCKVVEEKI-LFSWVEGHSSSKRRRGLKIRTLKD 512
               +    C     IQ      + ++G   +E+K  L SW +   + K++ GL IR+L  
Sbjct: 3216 LFVIPKRVCARLEKIQR-----DFLWGGGALEKKPHLVSW-KVVCADKKKGGLGIRSLAT 3269

Query: 513  MNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW 620
             NKA + K +WR     + LW + I  +Y  +E  W
Sbjct: 3270 FNKALLGKWLWRFANENEPLWKQIILSKYDLQEGGW 3305


>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 977

 Score = 82.0 bits (201), Expect(2) = 1e-16
 Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
 Frame = +3

Query: 177  PVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKSRLLSWAGRTVLVQVVLQNLC----- 341
            PV+YLG PL++ RLT     PL+E ++ ++  W  R LS AGR  L+  VL ++C     
Sbjct: 725  PVRYLGLPLLTKRLTATDYAPLLEQLKRKIGSWTHRYLSNAGRLNLISSVLWSICNFWLF 784

Query: 342  ----PLD-----GSSCNSF*DIQEARIYYEKVFGCKVVEEKILFSWVEGHSSSKRRRGLK 494
                P +        C+SF              G  +   K   SW +     K+  GL 
Sbjct: 785  AFRLPRECIRDIDKLCSSF-----------LWSGQDLNPRKAKVSW-DDVCKPKKEGGLG 832

Query: 495  IRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW 620
            +R+LK+ N    LK++W++ ++ +SLWVKWI +   K E+ W
Sbjct: 833  LRSLKEANDVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFW 874



 Score = 31.2 bits (69), Expect(2) = 1e-16
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 659 KLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
           KL K R  A +  K  V  G+ T FW D+W   G
Sbjct: 889 KLIKFREKAKNFCKVEVNKGNCTSFWYDDWSNMG 922


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 91.7 bits (226), Expect = 3e-16
 Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 7/185 (3%)
 Frame = +3

Query: 102 IFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKS 281
           I+ AG+  +                PV+YLG PL++ RLT     PL+E ++ ++  W +
Sbjct: 270 IYLAGVTEDVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPLLEHIKKKIGTWTT 329

Query: 282 RLLSWAGRTVLVQVVLQNLCP-------LDGSSCNSF*DIQEARIYYEKVFGCKVVEEKI 440
           R LS+AGR  L+  VL ++C        L          I  A ++     G  +   K 
Sbjct: 330 RYLSYAGRLNLITSVLWSICNFWLAAFRLPRECIREIDKICSAFLWS----GPDLNPRKT 385

Query: 441 LFSWVEGHSSSKRRRGLKIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW 620
              W +     K+  GL +R+LK+MN+   LKLIWR+ ++ +SLWV+WI +   K ++ W
Sbjct: 386 RVCWGDV-CKPKQEGGLGLRSLKEMNEVSCLKLIWRIVSHTNSLWVRWIEQYLLKHDTFW 444

Query: 621 TANST 635
           +  +T
Sbjct: 445 SVQTT 449


>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
          Length = 459

 Score = 77.8 bits (190), Expect(2) = 1e-15
 Identities = 50/173 (28%), Positives = 80/173 (46%)
 Frame = +3

Query: 102 IFFAGLNPEQEQHXXXXXXXXXXXXPVKYLGFPLISVRLTVQQCIPLVEMMEARLQLWKS 281
           +F  GL   ++Q             P+KYLG P+ + RLT     PL+E + A++  W S
Sbjct: 107 MFLGGLTDSEKQELSSCMGITLGNFPMKYLGLPVNTHRLTKADYEPLLEKIRAKVSNWSS 166

Query: 282 RLLSWAGRTVLVQVVLQNLCPLDGSSCNSF*DIQEARIYYEKVFGCKVVEEKILFSWVEG 461
           +LLS+AG+  LV VV+  +      S  S      AR+ +  +  C+             
Sbjct: 167 KLLSYAGKIQLVSVVIYGMV-----SSWSQTSTGTARVAWNII--CR------------- 206

Query: 462 HSSSKRRRGLKIRTLKDMNKAGILKLIWRLTANQDSLWVKWIYERYFKKESLW 620
               ++  GL  + L+++NK   LK++WR+     SLWV W+     K+ S W
Sbjct: 207 ---PRKEGGLNSKKLEELNKVFRLKMVWRVFKYASSLWVAWLKRNVLKRGSFW 256



 Score = 32.3 bits (72), Expect(2) = 1e-15
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 659 KLCKLRSLALSSIKTTVVNGSSTLFWLDNWHEQG 760
           KL  ++ LA   I+  + NG+   FW DNW + G
Sbjct: 270 KLLNMKDLAGKFIRCRIGNGNMASFWFDNWTDLG 303